Wall clock time and date at job start Mon Mar 30 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99512 * 2 1 4 4 H 1.48495 * 109.47178 * 272.55934 * 3 2 1 5 5 H 1.48506 * 109.47164 * 32.56169 * 3 2 1 6 6 H 1.48502 * 109.47170 * 152.55507 * 3 2 1 7 7 C 1.37869 * 120.00680 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00106 * 3.61695 * 7 2 1 9 9 C 1.50707 * 120.00427 * 183.62558 * 7 2 1 10 10 C 1.52993 * 115.54946 * 84.94495 * 9 7 2 11 11 N 1.46906 * 109.47386 * 39.48708 * 10 9 7 12 12 C 1.46905 * 110.99811 * 181.18071 * 11 10 9 13 13 H 1.08997 * 109.57196 * 36.89921 * 12 11 10 14 14 C 1.53088 * 109.52028 * 276.74265 * 12 11 10 15 15 O 1.42905 * 109.41380 * 182.48903 * 14 12 11 16 16 C 1.42902 * 114.09577 * 61.16014 * 15 14 12 17 17 C 1.53103 * 109.48454 * 298.88607 * 16 15 14 18 18 C 1.53171 * 109.15822 * 57.48001 * 17 16 15 19 19 H 1.09006 * 109.54749 * 183.24354 * 18 17 16 20 20 O 1.42894 * 109.54718 * 63.06174 * 18 17 16 21 21 C 1.52997 * 117.51377 * 230.64908 * 9 7 2 22 22 C 1.52997 * 117.49334 * 299.27752 * 9 7 2 23 23 H 0.96995 * 120.00187 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47076 * 279.48387 * 10 9 7 25 25 H 1.08998 * 109.46771 * 159.48652 * 10 9 7 26 26 H 1.00897 * 110.99714 * 305.13347 * 11 10 9 27 27 H 1.09007 * 109.48319 * 302.46889 * 14 12 11 28 28 H 1.08999 * 109.48391 * 62.50651 * 14 12 11 29 29 H 1.08991 * 109.48748 * 58.82513 * 16 15 14 30 30 H 1.09005 * 109.47762 * 178.84862 * 16 15 14 31 31 H 1.09005 * 109.45373 * 297.61357 * 17 16 15 32 32 H 1.09003 * 109.59981 * 177.42431 * 17 16 15 33 33 H 0.96705 * 113.99988 * 60.17853 * 20 18 17 34 34 H 1.09007 * 117.49668 * 214.96833 * 21 9 7 35 35 H 1.08996 * 117.50150 * 359.97438 * 21 9 7 36 36 H 1.09000 * 117.50294 * 359.97320 * 22 9 7 37 37 H 1.08998 * 117.49603 * 144.97777 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4424 2.0778 -1.3986 5 1 1.4745 2.6365 0.7536 6 1 3.5726 1.4254 0.6453 7 6 2.0046 -1.1939 -0.0005 8 1 1.4664 -2.1283 -0.0600 9 6 3.5094 -1.1952 0.0820 10 6 4.0929 -1.1183 1.4942 11 7 3.2881 -1.9463 2.4024 12 6 3.8034 -1.8744 3.7762 13 1 4.1559 -0.8636 3.9815 14 6 4.9606 -2.8631 3.9409 15 8 5.4221 -2.8332 5.2930 16 6 4.4348 -3.2099 6.2549 17 6 3.2551 -2.2366 6.1838 18 6 2.6878 -2.2375 4.7610 19 1 1.8844 -1.5044 4.6882 20 8 2.1795 -3.5362 4.4498 21 6 4.2734 -2.0221 -0.9541 22 6 4.2789 -0.4944 -1.0395 23 1 -0.4850 0.8400 -0.0004 24 1 4.0789 -0.0838 1.8373 25 1 5.1198 -1.4836 1.4834 26 1 2.3152 -1.6812 2.3668 27 1 4.6175 -3.8684 3.6961 28 1 5.7751 -2.5840 3.2725 29 1 4.0848 -4.2195 6.0405 30 1 4.8707 -3.1807 7.2536 31 1 3.5961 -1.2334 6.4394 32 1 2.4808 -2.5487 6.8847 33 1 1.4702 -3.8320 5.0368 34 1 5.1918 -2.5113 -0.6295 35 1 3.6877 -2.5657 -1.6953 36 1 3.6968 -0.0329 -1.8372 37 1 5.2007 0.0216 -0.7711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710929747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:02 Heat of formation + Delta-G solvation = -67.884701 kcal Electronic energy + Delta-G solvation = -18351.888362 eV Core-core repulsion = 15516.004740 eV Total energy + Delta-G solvation = -2835.883622 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62626 -37.21196 -36.17170 -34.24723 -32.08526 -31.49314 -29.19927 -25.76959 -24.91806 -24.36816 -22.11617 -21.51996 -19.92720 -18.86940 -16.87938 -16.29601 -16.17724 -15.96400 -15.17456 -14.85985 -14.68905 -13.88566 -13.67564 -13.40747 -13.17386 -12.81485 -12.65676 -12.06015 -11.91373 -11.64752 -11.58560 -11.11556 -10.94223 -10.65550 -10.39710 -10.10027 -10.07068 -9.95453 -9.45464 -9.22151 -9.01122 -8.59894 -8.39113 -7.51757 -6.10390 -4.11459 3.27113 3.36869 3.42292 3.96111 4.35236 4.41777 4.62102 4.82969 4.94807 4.99657 5.15136 5.21973 5.32028 5.40249 5.56140 5.67372 5.78559 5.86455 5.91628 5.98668 6.11319 6.18316 6.26906 6.33857 6.41060 6.55229 6.59925 6.80824 7.05827 7.20116 7.31488 7.76840 7.80504 7.95313 8.30938 8.58174 8.98273 9.53257 11.00955 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027892 B = 0.007561 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.646835 B = 3702.134705 C = 4070.934195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.257 1.257 7 C -0.476 4.476 8 H 0.081 0.919 9 C 0.007 3.993 10 C 0.094 3.906 11 N -0.656 5.656 12 C 0.061 3.939 13 H 0.051 0.949 14 C 0.075 3.925 15 O -0.390 6.390 16 C 0.066 3.934 17 C -0.188 4.188 18 C 0.102 3.898 19 H 0.058 0.942 20 O -0.543 6.543 21 C -0.174 4.174 22 C -0.208 4.208 23 H 0.263 0.737 24 H 0.020 0.980 25 H 0.048 0.952 26 H 0.365 0.635 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.369 0.631 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -3.349 11.339 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.181 1.181 7 C -0.514 4.514 8 H 0.099 0.901 9 C 0.006 3.994 10 C -0.035 4.035 11 N -0.292 5.292 12 C -0.050 4.050 13 H 0.068 0.932 14 C -0.002 4.002 15 O -0.308 6.308 16 C -0.011 4.011 17 C -0.226 4.226 18 C 0.043 3.957 19 H 0.076 0.924 20 O -0.347 6.347 21 C -0.211 4.211 22 C -0.246 4.246 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.189 0.811 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.215 0.785 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.667 -3.715 10.769 13.732 hybrid contribution -0.643 1.961 0.552 2.137 sum 7.025 -1.754 11.321 13.439 Atomic orbital electron populations 1.69909 1.06237 1.26881 1.50544 1.24996 0.94547 0.98828 0.94382 0.86955 0.80741 0.83663 0.78475 1.20561 1.22400 1.18080 1.20290 0.86707 0.94404 1.49961 0.90091 1.19373 0.94543 0.99063 0.86418 1.21685 0.95038 0.93230 0.93584 1.60267 1.08454 1.58024 1.02479 1.22105 0.94518 0.97764 0.90605 0.93155 1.22548 0.96289 0.99754 0.81646 1.87881 1.37142 1.89499 1.16267 1.22420 0.88973 0.97128 0.92566 1.22932 0.99659 1.01868 0.98164 1.21953 0.95358 0.85914 0.92506 0.92375 1.86691 1.56212 1.32956 1.58796 1.22790 1.01269 0.92389 1.04689 1.22985 1.01751 0.95215 1.04604 0.92719 0.96239 0.93402 0.81102 0.91442 0.89348 0.92615 0.89521 0.90435 0.90652 0.78531 0.91058 0.89812 0.89718 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.38 25.15 -169.99 -4.28 17.11 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -5.98 5.28 56.52 0.30 -5.68 16 7 C -0.48 -12.92 7.91 -34.44 -0.27 -13.19 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.01 0.17 1.20 -155.66 -0.19 -0.02 16 10 C 0.09 1.97 5.44 -3.82 -0.02 1.95 16 11 N -0.66 -13.25 5.99 -106.58 -0.64 -13.89 16 12 C 0.06 1.03 2.47 -67.57 -0.17 0.86 16 13 H 0.05 0.86 7.82 -51.93 -0.41 0.46 16 14 C 0.07 1.20 6.16 37.20 0.23 1.43 16 15 O -0.39 -5.88 10.77 -35.23 -0.38 -6.26 16 16 C 0.07 0.79 6.69 37.21 0.25 1.04 16 17 C -0.19 -2.13 5.84 -26.59 -0.16 -2.28 16 18 C 0.10 1.47 3.16 -26.55 -0.08 1.39 16 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 20 O -0.54 -7.96 12.10 -35.23 -0.43 -8.39 16 21 C -0.17 -3.65 9.88 -26.73 -0.26 -3.92 16 22 C -0.21 -4.49 7.44 -26.73 -0.20 -4.68 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.43 6.41 -51.93 -0.33 0.09 16 25 H 0.05 0.92 7.20 -51.93 -0.37 0.55 16 26 H 0.37 8.23 7.09 -39.29 -0.28 7.95 16 27 H 0.07 1.15 7.82 -51.92 -0.41 0.74 16 28 H 0.09 1.40 7.44 -51.93 -0.39 1.01 16 29 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.37 3.70 9.09 45.56 0.41 4.11 16 34 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 35 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 36 H 0.08 1.91 7.18 -51.93 -0.37 1.54 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 290.29 15.07 4.37 4.37 Total: -1.00 -30.16 290.29 -6.71 -36.86 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.17 Total: 11.51 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -0.97 Total: -15.46 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.13 Total: -39.75 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.81 Total: -14.64 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.28 Total: 17.11 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.16 -6.71 -36.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710929747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.022 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds