Wall clock time and date at job start Mon Mar 30 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99512 * 2 1 4 4 H 1.48495 * 109.47178 * 272.55934 * 3 2 1 5 5 H 1.48506 * 109.47164 * 32.56169 * 3 2 1 6 6 H 1.48502 * 109.47170 * 152.55507 * 3 2 1 7 7 C 1.37869 * 120.00680 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00106 * 3.61695 * 7 2 1 9 9 C 1.50707 * 120.00427 * 183.62558 * 7 2 1 10 10 C 1.52993 * 115.54946 * 84.94495 * 9 7 2 11 11 N 1.46906 * 109.47386 * 39.48708 * 10 9 7 12 12 C 1.46905 * 110.99811 * 181.18071 * 11 10 9 13 13 H 1.08997 * 109.57196 * 36.89921 * 12 11 10 14 14 C 1.53088 * 109.52028 * 276.74265 * 12 11 10 15 15 O 1.42905 * 109.41380 * 182.48903 * 14 12 11 16 16 C 1.42902 * 114.09577 * 61.16014 * 15 14 12 17 17 C 1.53103 * 109.48454 * 298.88607 * 16 15 14 18 18 C 1.53171 * 109.15822 * 57.48001 * 17 16 15 19 19 H 1.09006 * 109.54749 * 183.24354 * 18 17 16 20 20 O 1.42894 * 109.54718 * 63.06174 * 18 17 16 21 21 C 1.52997 * 117.51377 * 230.64908 * 9 7 2 22 22 C 1.52997 * 117.49334 * 299.27752 * 9 7 2 23 23 H 0.96995 * 120.00187 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47076 * 279.48387 * 10 9 7 25 25 H 1.08998 * 109.46771 * 159.48652 * 10 9 7 26 26 H 1.00897 * 110.99714 * 305.13347 * 11 10 9 27 27 H 1.09007 * 109.48319 * 302.46889 * 14 12 11 28 28 H 1.08999 * 109.48391 * 62.50651 * 14 12 11 29 29 H 1.08991 * 109.48748 * 58.82513 * 16 15 14 30 30 H 1.09005 * 109.47762 * 178.84862 * 16 15 14 31 31 H 1.09005 * 109.45373 * 297.61357 * 17 16 15 32 32 H 1.09003 * 109.59981 * 177.42431 * 17 16 15 33 33 H 0.96705 * 113.99988 * 60.17853 * 20 18 17 34 34 H 1.09007 * 117.49668 * 214.96833 * 21 9 7 35 35 H 1.08996 * 117.50150 * 359.97438 * 21 9 7 36 36 H 1.09000 * 117.50294 * 359.97320 * 22 9 7 37 37 H 1.08998 * 117.49603 * 144.97777 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4424 2.0778 -1.3986 5 1 1.4745 2.6365 0.7536 6 1 3.5726 1.4254 0.6453 7 6 2.0046 -1.1939 -0.0005 8 1 1.4664 -2.1283 -0.0600 9 6 3.5094 -1.1952 0.0820 10 6 4.0929 -1.1183 1.4942 11 7 3.2881 -1.9463 2.4024 12 6 3.8034 -1.8744 3.7762 13 1 4.1559 -0.8636 3.9815 14 6 4.9606 -2.8631 3.9409 15 8 5.4221 -2.8332 5.2930 16 6 4.4348 -3.2099 6.2549 17 6 3.2551 -2.2366 6.1838 18 6 2.6878 -2.2375 4.7610 19 1 1.8844 -1.5044 4.6882 20 8 2.1795 -3.5362 4.4498 21 6 4.2734 -2.0221 -0.9541 22 6 4.2789 -0.4944 -1.0395 23 1 -0.4850 0.8400 -0.0004 24 1 4.0789 -0.0838 1.8373 25 1 5.1198 -1.4836 1.4834 26 1 2.3152 -1.6812 2.3668 27 1 4.6175 -3.8684 3.6961 28 1 5.7751 -2.5840 3.2725 29 1 4.0848 -4.2195 6.0405 30 1 4.8707 -3.1807 7.2536 31 1 3.5961 -1.2334 6.4394 32 1 2.4808 -2.5487 6.8847 33 1 1.4702 -3.8320 5.0368 34 1 5.1918 -2.5113 -0.6295 35 1 3.6877 -2.5657 -1.6953 36 1 3.6968 -0.0329 -1.8372 37 1 5.2007 0.0216 -0.7711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710929747.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:02 Heat of formation + Delta-G solvation = -92.399569 kcal Electronic energy + Delta-G solvation = -18352.951406 eV Core-core repulsion = 15516.004740 eV Total energy + Delta-G solvation = -2836.946666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78779 -38.91539 -37.31340 -35.70523 -34.21531 -32.52175 -30.55125 -27.75701 -26.35418 -25.61943 -23.39763 -23.15618 -21.22138 -20.67424 -18.19179 -17.97624 -17.45587 -17.11838 -16.80570 -16.39736 -15.95703 -15.47793 -14.96416 -14.91354 -14.71603 -14.43487 -14.25549 -13.38820 -13.35472 -13.06631 -12.95154 -12.71616 -12.51903 -12.08755 -12.05999 -11.86831 -11.34472 -11.28935 -11.05792 -10.95787 -10.58265 -10.36693 -10.21219 -9.08583 -8.26270 -6.30579 1.32976 1.36996 1.48620 2.36978 2.81111 3.07493 3.18161 3.29647 3.54540 3.75043 3.91090 3.97719 4.09560 4.22034 4.27313 4.41397 4.52300 4.52648 4.70744 4.73337 4.76850 4.80707 4.86108 4.88582 4.97453 5.04560 5.12111 5.18339 5.33853 5.51396 5.76146 6.12582 6.34616 6.48352 6.60903 6.79957 6.94323 7.36775 8.88888 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027892 B = 0.007561 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.646835 B = 3702.134705 C = 4070.934195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.233 1.233 7 C -0.467 4.467 8 H 0.032 0.968 9 C -0.021 4.021 10 C 0.101 3.899 11 N -0.666 5.666 12 C 0.056 3.944 13 H 0.050 0.950 14 C 0.085 3.915 15 O -0.400 6.400 16 C 0.059 3.941 17 C -0.177 4.177 18 C 0.101 3.899 19 H 0.049 0.951 20 O -0.563 6.563 21 C -0.163 4.163 22 C -0.199 4.199 23 H 0.263 0.737 24 H 0.013 0.987 25 H 0.070 0.930 26 H 0.347 0.653 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.388 0.612 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 -2.899 12.702 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.156 1.156 7 C -0.505 4.505 8 H 0.050 0.950 9 C -0.022 4.022 10 C -0.028 4.028 11 N -0.300 5.300 12 C -0.055 4.055 13 H 0.068 0.932 14 C 0.008 3.992 15 O -0.318 6.318 16 C -0.017 4.017 17 C -0.215 4.215 18 C 0.041 3.959 19 H 0.067 0.933 20 O -0.370 6.370 21 C -0.200 4.200 22 C -0.237 4.237 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.088 0.912 26 H 0.168 0.832 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.237 0.763 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.872 -3.290 12.149 15.997 hybrid contribution -1.379 1.681 0.149 2.180 sum 8.493 -1.609 12.298 15.032 Atomic orbital electron populations 1.70049 1.08079 1.27701 1.52816 1.25714 0.95091 1.02264 0.94290 0.86022 0.80436 0.79218 0.78637 1.20183 1.22790 1.15579 1.20310 0.89126 0.92388 1.48702 0.94971 1.19371 0.92318 1.01994 0.88486 1.21605 0.95938 0.93175 0.92073 1.60247 1.07305 1.57850 1.04591 1.22228 0.95807 0.98113 0.89327 0.93213 1.22334 0.95731 0.98528 0.82606 1.87869 1.38322 1.89628 1.15996 1.22691 0.88854 0.97172 0.93006 1.22865 1.00141 1.02098 0.96395 1.21919 0.94517 0.85602 0.93815 0.93317 1.86636 1.57253 1.33008 1.60125 1.22834 1.01658 0.92414 1.03060 1.23014 1.02126 0.95703 1.02825 0.92782 0.96878 0.91186 0.83190 0.92832 0.89304 0.92604 0.86729 0.90085 0.87659 0.76320 0.88119 0.90906 0.91019 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.03 13.96 21.44 0.30 -57.73 16 2 C 0.02 1.34 5.47 84.65 0.46 1.81 16 3 Si 0.93 43.89 25.15 68.60 1.73 45.62 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.23 -10.00 5.28 99.48 0.53 -9.48 16 7 C -0.47 -25.99 7.91 25.60 0.20 -25.79 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 9 C -0.02 -0.93 1.20 -52.93 -0.06 -1.00 16 10 C 0.10 4.08 5.44 86.30 0.47 4.55 16 11 N -0.67 -26.73 5.99 -491.10 -2.94 -29.68 16 12 C 0.06 1.82 2.47 45.00 0.11 1.93 16 13 H 0.05 1.63 7.82 -2.39 -0.02 1.61 16 14 C 0.09 2.61 6.16 72.01 0.44 3.05 16 15 O -0.40 -11.15 10.77 -148.98 -1.60 -12.75 16 16 C 0.06 1.23 6.69 72.02 0.48 1.72 16 17 C -0.18 -3.52 5.84 30.69 0.18 -3.34 16 18 C 0.10 2.80 3.16 30.71 0.10 2.90 16 19 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 20 O -0.56 -16.11 12.10 -148.98 -1.80 -17.91 16 21 C -0.16 -6.50 9.88 30.59 0.30 -6.20 16 22 C -0.20 -8.07 7.44 30.59 0.23 -7.84 16 23 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.01 0.54 6.41 -2.39 -0.02 0.53 16 25 H 0.07 2.50 7.20 -2.39 -0.02 2.48 16 26 H 0.35 16.03 7.09 -89.70 -0.64 15.39 16 27 H 0.05 1.77 7.82 -2.38 -0.02 1.75 16 28 H 0.09 2.64 7.44 -2.39 -0.02 2.62 16 29 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 30 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.39 7.33 9.09 -74.05 -0.67 6.66 16 34 H 0.10 3.44 8.08 -2.38 -0.02 3.42 16 35 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.07 3.10 7.18 -2.39 -0.02 3.08 16 37 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -66.07 290.29 -1.83 -67.90 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.42 Total: 32.76 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 2.91 Total: -28.21 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.64 Total: -87.41 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -3.41 Total: -30.66 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.73 Total: 45.62 kcal Total: -66.07 -1.83 -67.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710929747.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.498 kcal (2) G-P(sol) polarization free energy of solvation -66.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds