Wall clock time and date at job start Mon Mar 30 2020 04:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 C 1.52998 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.45489 * 52.39356 * 4 3 2 6 6 C 1.54482 * 110.50939 * 289.64155 * 4 3 2 7 7 O 1.44432 * 104.79986 * 217.37687 * 6 4 3 8 8 C 1.44780 * 105.29514 * 40.54871 * 7 6 4 9 9 C 1.54475 * 104.63042 * 319.46032 * 8 7 6 10 10 H 1.09002 * 110.51293 * 142.72698 * 9 8 7 11 11 N 1.46496 * 110.51566 * 265.30041 * 9 8 7 12 12 C 1.46505 * 119.99929 * 56.69171 * 11 9 8 13 13 C 1.34777 * 120.00345 * 236.69662 * 11 9 8 14 14 O 1.21691 * 119.99927 * 359.71664 * 13 11 9 15 15 C 1.46376 * 120.00409 * 180.02562 * 13 11 9 16 16 H 1.08000 * 119.99344 * 359.71922 * 15 13 11 17 17 C 1.40047 * 119.99962 * 179.72389 * 15 13 11 18 18 N 1.30669 * 120.00136 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99668 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47477 * 89.99602 * 19 17 15 21 21 H 1.48498 * 109.47011 * 209.99875 * 19 17 15 22 22 H 1.48499 * 109.47134 * 329.99497 * 19 17 15 23 23 H 1.08993 * 109.47067 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47073 * 300.00680 * 1 2 3 25 25 H 1.09000 * 109.46697 * 60.00097 * 1 2 3 26 26 H 1.08991 * 109.47196 * 239.99971 * 2 1 3 27 27 H 1.09003 * 109.46954 * 119.99437 * 2 1 3 28 28 H 1.09007 * 109.47352 * 59.99633 * 3 2 1 29 29 H 1.08995 * 109.47146 * 300.00074 * 3 2 1 30 30 H 1.08994 * 110.37121 * 336.20545 * 6 4 3 31 31 H 1.09001 * 110.37203 * 98.54659 * 6 4 3 32 32 H 1.09009 * 110.48491 * 200.67444 * 8 7 6 33 33 H 1.09007 * 110.43070 * 78.22540 * 8 7 6 34 34 H 1.08997 * 109.46764 * 270.00024 * 12 11 9 35 35 H 1.08993 * 109.46716 * 30.00155 * 12 11 9 36 36 H 1.08994 * 109.46661 * 150.00528 * 12 11 9 37 37 H 0.96999 * 119.99949 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9513 0.8192 -0.8081 6 6 4.1107 0.9563 1.3637 7 8 5.2792 1.7693 1.6083 8 6 4.9145 3.1021 1.1761 9 6 4.1115 2.8841 -0.1254 10 1 3.2892 3.5966 -0.1907 11 7 4.9863 3.0035 -1.2945 12 6 6.1712 2.1500 -1.4129 13 6 4.7011 3.8983 -2.2611 14 8 3.7141 4.6037 -2.1653 15 6 5.5748 4.0172 -3.4295 16 1 6.4505 3.3908 -3.5147 17 6 5.2752 4.9430 -4.4366 18 7 4.2155 5.7005 -4.3336 19 14 6.3907 5.0951 -5.9272 20 1 5.9282 4.1652 -6.9886 21 1 6.3479 6.4891 -6.4373 22 1 7.7829 4.7521 -5.5408 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.3677 1.1152 2.1451 31 1 4.3859 -0.0969 1.3089 32 1 5.8066 3.6959 0.9766 33 1 4.2936 3.5893 1.9280 34 1 7.0244 2.6471 -0.9513 35 1 5.9872 1.2012 -0.9091 36 1 6.3834 1.9672 -2.4662 37 1 4.0078 6.3415 -5.0313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711243570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:14 Heat of formation + Delta-G solvation = -94.962264 kcal Electronic energy + Delta-G solvation = -18201.009688 eV Core-core repulsion = 15363.951895 eV Total energy + Delta-G solvation = -2837.057793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.65171 -37.03795 -35.17036 -33.69327 -32.45567 -30.88919 -28.73757 -26.18373 -25.65456 -25.28956 -22.68319 -21.32461 -20.07863 -18.80690 -16.55323 -16.10282 -15.71268 -15.39692 -15.11306 -14.56750 -14.16423 -13.93381 -13.56011 -13.20160 -12.60797 -12.52128 -12.19507 -12.01938 -11.55332 -11.39170 -11.32365 -11.26117 -10.99315 -10.91560 -10.73206 -10.41232 -10.39507 -10.30117 -10.22674 -10.12380 -9.51484 -8.86686 -7.60235 -7.20204 -6.21106 -4.66258 3.12725 3.19953 3.23243 4.06647 4.27570 4.49565 4.51995 4.88918 5.03307 5.14959 5.25069 5.27663 5.45783 5.55921 5.68491 5.76416 5.77884 5.88117 5.90531 5.93640 6.04083 6.11306 6.15299 6.19681 6.25815 6.41003 6.48127 6.58424 6.60481 6.64980 7.10147 7.43540 7.62106 8.13556 8.35576 9.00786 9.40805 10.55379 10.74100 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.006729 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.591431 B = 4160.017843 C = 4703.893955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.133 4.133 5 H 0.087 0.913 6 C 0.051 3.949 7 O -0.379 6.379 8 C 0.034 3.966 9 C 0.123 3.877 10 H 0.106 0.894 11 N -0.637 5.637 12 C 0.104 3.896 13 C 0.556 3.444 14 O -0.579 6.579 15 C -0.542 4.542 16 H 0.073 0.927 17 C 0.087 3.913 18 N -0.767 5.767 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.575 -9.470 7.726 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.153 4.153 5 H 0.105 0.895 6 C -0.026 4.026 7 O -0.298 6.298 8 C -0.044 4.044 9 C 0.017 3.983 10 H 0.124 0.876 11 N -0.374 5.374 12 C -0.040 4.040 13 C 0.362 3.638 14 O -0.462 6.462 15 C -0.578 4.578 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.396 5.396 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.188 1.188 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.021 -8.984 7.770 12.049 hybrid contribution 0.451 0.076 -0.814 0.934 sum -1.570 -8.908 6.956 11.411 Atomic orbital electron populations 1.21772 0.96106 1.01154 1.01909 1.21545 0.95657 0.97163 1.01705 1.21611 0.93834 0.96501 1.02634 1.22978 0.95995 0.98330 0.98046 0.89496 1.23448 0.88035 0.95635 0.95481 1.89134 1.35255 1.20137 1.85261 1.23938 1.00379 0.84840 0.95218 1.21994 0.94292 0.95563 0.86444 0.87588 1.47947 1.26435 1.41624 1.21384 1.21337 0.87945 0.93198 1.01536 1.18298 0.85650 0.78126 0.81707 1.90582 1.30400 1.46237 1.78972 1.21010 1.11004 1.22113 1.03683 0.90925 1.25741 0.94693 0.94132 0.98694 1.70020 1.22244 1.16177 1.31145 0.86390 0.81068 0.77950 0.81493 1.19742 1.20448 1.18842 0.93114 0.92911 0.92597 0.92050 0.92346 0.92076 0.91016 0.92692 0.89831 0.88862 0.92405 0.95095 0.93630 0.91287 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.45 5.81 -26.73 -0.16 -1.61 16 3 C -0.11 -1.55 4.43 -26.73 -0.12 -1.67 16 4 C -0.13 -2.12 2.28 -89.05 -0.20 -2.32 16 5 H 0.09 1.47 6.99 -51.93 -0.36 1.11 16 6 C 0.05 0.71 6.51 37.94 0.25 0.96 16 7 O -0.38 -6.28 11.34 -35.23 -0.40 -6.68 16 8 C 0.03 0.58 6.84 37.93 0.26 0.84 16 9 C 0.12 2.41 3.17 -66.36 -0.21 2.20 16 10 H 0.11 2.33 6.57 -51.93 -0.34 1.99 16 11 N -0.64 -14.50 2.76 -173.80 -0.48 -14.98 16 12 C 0.10 2.02 9.18 59.85 0.55 2.57 16 13 C 0.56 15.73 7.61 -12.99 -0.10 15.63 16 14 O -0.58 -18.45 14.38 5.20 0.07 -18.37 16 15 C -0.54 -15.17 8.74 -35.63 -0.31 -15.48 16 16 H 0.07 1.87 6.00 -52.49 -0.31 1.56 16 17 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 18 N -0.77 -22.84 11.83 55.55 0.66 -22.18 16 19 Si 0.91 20.04 29.56 -169.99 -5.02 15.02 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.61 7.63 -51.93 -0.40 0.22 16 28 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.68 7.74 -51.93 -0.40 0.28 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.69 8.06 -51.92 -0.42 1.27 16 33 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.78 6.63 -51.93 -0.34 0.44 16 36 H 0.07 1.37 6.09 -51.93 -0.32 1.05 16 37 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -32.73 298.28 -6.27 -39.00 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.83 Total: 1.51 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 0.23 Total: 2.19 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.18 Total: -37.16 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.32 Total: -25.05 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.73 -6.27 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711243570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.959 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds