Wall clock time and date at job start Mon Mar 30 2020 04:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 C 1.52998 * 109.47185 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.45489 * 52.39356 * 4 3 2 6 6 C 1.54482 * 110.50939 * 289.64155 * 4 3 2 7 7 O 1.44432 * 104.79986 * 217.37687 * 6 4 3 8 8 C 1.44780 * 105.29514 * 40.54871 * 7 6 4 9 9 C 1.54475 * 104.63042 * 319.46032 * 8 7 6 10 10 H 1.09002 * 110.51293 * 142.72698 * 9 8 7 11 11 N 1.46496 * 110.51566 * 265.30041 * 9 8 7 12 12 C 1.46505 * 119.99929 * 56.69171 * 11 9 8 13 13 C 1.34777 * 120.00345 * 236.69662 * 11 9 8 14 14 O 1.21691 * 119.99927 * 359.71664 * 13 11 9 15 15 C 1.46376 * 120.00409 * 180.02562 * 13 11 9 16 16 H 1.08000 * 119.99344 * 359.71922 * 15 13 11 17 17 C 1.40047 * 119.99962 * 179.72389 * 15 13 11 18 18 N 1.30669 * 120.00136 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99668 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47477 * 89.99602 * 19 17 15 21 21 H 1.48498 * 109.47011 * 209.99875 * 19 17 15 22 22 H 1.48499 * 109.47134 * 329.99497 * 19 17 15 23 23 H 1.08993 * 109.47067 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47073 * 300.00680 * 1 2 3 25 25 H 1.09000 * 109.46697 * 60.00097 * 1 2 3 26 26 H 1.08991 * 109.47196 * 239.99971 * 2 1 3 27 27 H 1.09003 * 109.46954 * 119.99437 * 2 1 3 28 28 H 1.09007 * 109.47352 * 59.99633 * 3 2 1 29 29 H 1.08995 * 109.47146 * 300.00074 * 3 2 1 30 30 H 1.08994 * 110.37121 * 336.20545 * 6 4 3 31 31 H 1.09001 * 110.37203 * 98.54659 * 6 4 3 32 32 H 1.09009 * 110.48491 * 200.67444 * 8 7 6 33 33 H 1.09007 * 110.43070 * 78.22540 * 8 7 6 34 34 H 1.08997 * 109.46764 * 270.00024 * 12 11 9 35 35 H 1.08993 * 109.46716 * 30.00155 * 12 11 9 36 36 H 1.08994 * 109.46661 * 150.00528 * 12 11 9 37 37 H 0.96999 * 119.99949 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9513 0.8192 -0.8081 6 6 4.1107 0.9563 1.3637 7 8 5.2792 1.7693 1.6083 8 6 4.9145 3.1021 1.1761 9 6 4.1115 2.8841 -0.1254 10 1 3.2892 3.5966 -0.1907 11 7 4.9863 3.0035 -1.2945 12 6 6.1712 2.1500 -1.4129 13 6 4.7011 3.8983 -2.2611 14 8 3.7141 4.6037 -2.1653 15 6 5.5748 4.0172 -3.4295 16 1 6.4505 3.3908 -3.5147 17 6 5.2752 4.9430 -4.4366 18 7 4.2155 5.7005 -4.3336 19 14 6.3907 5.0951 -5.9272 20 1 5.9282 4.1652 -6.9886 21 1 6.3479 6.4891 -6.4373 22 1 7.7829 4.7521 -5.5408 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.3677 1.1152 2.1451 31 1 4.3859 -0.0969 1.3089 32 1 5.8066 3.6959 0.9766 33 1 4.2936 3.5893 1.9280 34 1 7.0244 2.6471 -0.9513 35 1 5.9872 1.2012 -0.9091 36 1 6.3834 1.9672 -2.4662 37 1 4.0078 6.3415 -5.0313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711243570.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:13 Heat of formation + Delta-G solvation = -117.189540 kcal Electronic energy + Delta-G solvation = -18201.973535 eV Core-core repulsion = 15363.951895 eV Total energy + Delta-G solvation = -2838.021640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10460 -38.96329 -36.29787 -35.53984 -34.60777 -32.15856 -30.17614 -28.17983 -27.09804 -26.71752 -24.01130 -22.71040 -21.43694 -20.51614 -18.48100 -17.81811 -17.38493 -16.66499 -16.59882 -16.10160 -15.68522 -15.43101 -15.15423 -14.43647 -14.05043 -13.92140 -13.55104 -13.47133 -13.37584 -13.09084 -12.91839 -12.76417 -12.38849 -12.32064 -12.19856 -12.01505 -11.99383 -11.69768 -11.61161 -11.40271 -10.94424 -10.78379 -9.79542 -9.05930 -8.29983 -6.85584 1.38933 1.40097 1.55446 2.22591 2.43657 2.78407 3.00060 3.49747 3.69804 3.87326 3.93540 4.12501 4.20181 4.30816 4.34981 4.41767 4.55743 4.66739 4.69914 4.75253 4.81752 4.86442 4.92136 4.96358 5.02682 5.10602 5.15879 5.27994 5.35661 5.39080 5.45891 5.71489 5.82453 6.12346 6.42582 6.86632 7.39273 8.45309 8.65889 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.006729 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.591431 B = 4160.017843 C = 4703.893955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.104 4.104 4 C -0.125 4.125 5 H 0.076 0.924 6 C 0.056 3.944 7 O -0.385 6.385 8 C 0.045 3.955 9 C 0.111 3.889 10 H 0.071 0.929 11 N -0.638 5.638 12 C 0.106 3.894 13 C 0.538 3.462 14 O -0.630 6.630 15 C -0.568 4.568 16 H 0.091 0.909 17 C 0.029 3.971 18 N -0.821 5.821 19 Si 0.995 3.005 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.249 1.249 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 -11.464 8.352 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.145 4.145 5 H 0.095 0.905 6 C -0.020 4.020 7 O -0.304 6.304 8 C -0.033 4.033 9 C 0.006 3.994 10 H 0.089 0.911 11 N -0.374 5.374 12 C -0.037 4.037 13 C 0.345 3.655 14 O -0.517 6.517 15 C -0.604 4.604 16 H 0.109 0.891 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.814 3.186 20 H -0.186 1.186 21 H -0.198 1.198 22 H -0.172 1.172 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.818 -11.033 8.442 13.917 hybrid contribution 0.045 0.662 -0.933 1.144 sum -0.773 -10.371 7.510 12.828 Atomic orbital electron populations 1.21773 0.95315 1.02247 1.01594 1.21510 0.96345 0.94991 1.02597 1.21563 0.92909 0.98356 1.01314 1.22889 0.96805 0.95409 0.99403 0.90519 1.23620 0.87674 0.96479 0.94242 1.89129 1.36505 1.19711 1.85049 1.23745 0.99662 0.85581 0.94284 1.22203 0.93421 0.97328 0.86461 0.91068 1.47793 1.27568 1.40748 1.21250 1.21426 0.86815 0.93746 1.01676 1.18677 0.85235 0.78585 0.83047 1.90533 1.32327 1.48491 1.80397 1.21523 1.11721 1.22944 1.04250 0.89096 1.26984 0.96219 0.93061 1.02336 1.70191 1.24759 1.17253 1.32860 0.85060 0.78899 0.78250 0.76378 1.18604 1.19817 1.17174 0.91286 0.92120 0.94121 0.92610 0.89886 0.90963 0.94890 0.90398 0.87077 0.90112 0.90333 0.94340 0.91012 0.91826 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.12 -2.53 5.81 30.60 0.18 -2.35 16 3 C -0.10 -2.94 4.43 30.59 0.14 -2.80 16 4 C -0.13 -3.85 2.28 -9.78 -0.02 -3.87 16 5 H 0.08 2.52 6.99 -2.39 -0.02 2.50 16 6 C 0.06 1.37 6.51 72.49 0.47 1.84 16 7 O -0.38 -11.68 11.34 -148.98 -1.69 -13.37 16 8 C 0.05 1.51 6.84 72.48 0.50 2.00 16 9 C 0.11 4.42 3.17 46.01 0.15 4.56 16 10 H 0.07 3.32 6.57 -2.39 -0.02 3.30 16 11 N -0.64 -29.68 2.76 -822.01 -2.27 -31.95 16 12 C 0.11 4.05 9.18 127.77 1.17 5.23 16 13 C 0.54 31.69 7.61 86.36 0.66 32.35 16 14 O -0.63 -42.52 14.38 -4.32 -0.06 -42.59 16 15 C -0.57 -32.43 8.74 24.83 0.22 -32.21 16 16 H 0.09 4.67 6.00 -2.91 -0.02 4.65 16 17 C 0.03 1.63 5.50 85.30 0.47 2.10 16 18 N -0.82 -50.62 11.83 21.83 0.26 -50.37 16 19 Si 0.99 41.18 29.56 68.60 2.03 43.21 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.42 7.63 -2.39 -0.02 1.40 16 28 H 0.07 1.86 7.96 -2.38 -0.02 1.84 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.60 7.74 -2.39 -0.02 1.58 16 31 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.90 8.06 -2.38 -0.02 2.88 16 33 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 2.34 6.63 -2.39 -0.02 2.32 16 36 H 0.06 2.47 6.09 -2.39 -0.01 2.46 16 37 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 Total: -1.00 -74.39 298.28 3.94 -70.45 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.04 Total: 20.06 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 4.64 Total: 4.56 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -2.01 Total: -82.32 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -1.75 Total: -55.96 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -74.39 3.94 -70.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711243570.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.742 kcal (2) G-P(sol) polarization free energy of solvation -74.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds