Wall clock time and date at job start Mon Mar 30 2020 04:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46839 * 2 1 4 4 C 1.52997 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.45821 * 307.60906 * 4 3 2 6 6 C 1.54491 * 110.62642 * 70.29065 * 4 3 2 7 7 O 1.44425 * 104.80304 * 142.68020 * 6 4 3 8 8 C 1.44430 * 105.27535 * 319.49339 * 7 6 4 9 9 C 1.54470 * 104.80554 * 40.50736 * 8 7 6 10 10 H 1.09005 * 110.63325 * 217.31924 * 9 8 7 11 11 N 1.46508 * 110.50961 * 94.66961 * 9 8 7 12 12 C 1.46498 * 119.99735 * 305.35470 * 11 9 8 13 13 C 1.34774 * 120.00118 * 125.35779 * 11 9 8 14 14 O 1.21691 * 119.99918 * 0.02562 * 13 11 9 15 15 C 1.46369 * 120.00119 * 179.97438 * 13 11 9 16 16 H 1.08002 * 120.00206 * 355.24973 * 15 13 11 17 17 C 1.40052 * 120.00310 * 175.24342 * 15 13 11 18 18 N 1.30677 * 119.99659 * 6.28537 * 17 15 13 19 19 Si 1.86789 * 120.00331 * 186.28461 * 17 15 13 20 20 H 1.48507 * 109.47145 * 94.98140 * 19 17 15 21 21 H 1.48500 * 109.47508 * 214.98342 * 19 17 15 22 22 H 1.48505 * 109.47291 * 334.98339 * 19 17 15 23 23 H 1.09004 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46748 * 299.99273 * 1 2 3 25 25 H 1.08994 * 109.47439 * 59.99657 * 1 2 3 26 26 H 1.09003 * 109.46515 * 240.00243 * 2 1 3 27 27 H 1.08994 * 109.47439 * 120.00342 * 2 1 3 28 28 H 1.08997 * 109.46745 * 60.00521 * 3 2 1 29 29 H 1.08994 * 109.47385 * 300.00376 * 3 2 1 30 30 H 1.08999 * 110.36953 * 261.51313 * 6 4 3 31 31 H 1.09002 * 110.36617 * 23.85135 * 6 4 3 32 32 H 1.09001 * 110.36765 * 281.67775 * 8 7 6 33 33 H 1.08996 * 110.37271 * 159.34888 * 8 7 6 34 34 H 1.09000 * 109.46830 * 90.00155 * 12 11 9 35 35 H 1.09000 * 109.46986 * 209.99898 * 12 11 9 36 36 H 1.08994 * 109.47272 * 329.99984 * 12 11 9 37 37 H 0.96996 * 120.00175 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9513 0.8192 0.8081 6 6 4.1136 0.9552 -1.3621 7 8 5.2827 1.7676 -1.6048 8 6 4.9181 3.0973 -1.1746 9 6 4.1114 2.8842 0.1254 10 1 3.2890 3.5969 0.1884 11 7 4.9837 3.0043 1.2963 12 6 6.1907 2.1803 1.3981 13 6 4.6758 3.8728 2.2799 14 8 3.6729 4.5568 2.1955 15 6 5.5470 3.9924 3.4499 16 1 6.3939 3.3317 3.5624 17 6 5.2824 4.9636 4.4237 18 7 4.1919 5.6802 4.3524 19 14 6.4882 5.2347 5.8243 20 1 7.4109 6.3448 5.4753 21 1 5.7416 5.5817 7.0602 22 1 7.2709 3.9932 6.0510 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 4.3885 -0.0981 -1.3058 31 1 3.3722 1.1135 -2.1453 32 1 4.3002 3.5841 -1.9291 33 1 5.8110 3.6895 -0.9745 34 1 7.0302 2.7083 0.9458 35 1 6.4085 1.9831 2.4478 36 1 6.0315 1.2366 0.8765 37 1 4.0088 6.3531 5.0265 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711243573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:15 Heat of formation + Delta-G solvation = -95.072574 kcal Electronic energy + Delta-G solvation = -18202.797159 eV Core-core repulsion = 15365.734583 eV Total energy + Delta-G solvation = -2837.062576 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67332 -37.04521 -35.17562 -33.69394 -32.45869 -30.89655 -28.72972 -26.18097 -25.66467 -25.29655 -22.66838 -21.32067 -20.08472 -18.81414 -16.55876 -16.10648 -15.72044 -15.40123 -15.10620 -14.57721 -14.15743 -13.93908 -13.56012 -13.20270 -12.60868 -12.52161 -12.19852 -12.02257 -11.53066 -11.42032 -11.32013 -11.25130 -10.98920 -10.91815 -10.73548 -10.41098 -10.39678 -10.29974 -10.22718 -10.11353 -9.51142 -8.86031 -7.59911 -7.20365 -6.22133 -4.65817 3.12640 3.20178 3.23350 4.06708 4.28200 4.47540 4.53792 4.89284 5.03773 5.15573 5.25083 5.28095 5.45990 5.55869 5.68500 5.76166 5.77841 5.88470 5.90892 5.94018 6.04162 6.12002 6.15227 6.20195 6.25894 6.41223 6.48875 6.58864 6.60530 6.64845 7.10901 7.44041 7.62036 8.13851 8.35603 9.00854 9.40753 10.55039 10.73763 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.006724 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.314549 B = 4163.285726 C = 4723.980769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.134 4.134 5 H 0.086 0.914 6 C 0.051 3.949 7 O -0.378 6.378 8 C 0.034 3.966 9 C 0.123 3.877 10 H 0.106 0.894 11 N -0.637 5.637 12 C 0.104 3.896 13 C 0.556 3.444 14 O -0.579 6.579 15 C -0.542 4.542 16 H 0.073 0.927 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.359 -9.230 -7.917 12.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.154 4.154 5 H 0.105 0.895 6 C -0.026 4.026 7 O -0.297 6.297 8 C -0.043 4.043 9 C 0.017 3.983 10 H 0.124 0.876 11 N -0.374 5.374 12 C -0.040 4.040 13 C 0.363 3.637 14 O -0.462 6.462 15 C -0.579 4.579 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.188 1.188 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.819 -8.766 -7.949 11.972 hybrid contribution 0.506 0.154 0.759 0.925 sum -1.313 -8.612 -7.190 11.296 Atomic orbital electron populations 1.21774 0.96109 1.01148 1.01911 1.21546 0.95656 0.97172 1.01694 1.21604 0.93816 0.96494 1.02644 1.22986 0.96006 0.98368 0.98018 0.89545 1.23456 0.87984 0.95645 0.95534 1.89080 1.35216 1.20116 1.85285 1.23858 1.00361 0.84917 0.95211 1.22004 0.94308 0.95570 0.86416 0.87576 1.47950 1.24966 1.44000 1.20472 1.21338 0.87525 0.93610 1.01544 1.18294 0.85699 0.77948 0.81809 1.90582 1.29109 1.46796 1.79743 1.21014 1.13086 1.19054 1.04739 0.90886 1.25740 0.94777 0.94651 0.98067 1.70028 1.21741 1.16497 1.31270 0.86377 0.80789 0.79322 0.80408 1.19774 1.20467 1.18840 0.93121 0.92593 0.92910 0.92362 0.92052 0.90976 0.92093 0.89824 0.92686 0.92449 0.88880 0.95077 0.91311 0.93604 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.12 -1.46 5.81 -26.73 -0.16 -1.62 16 3 C -0.11 -1.56 4.43 -26.73 -0.12 -1.67 16 4 C -0.13 -2.13 2.29 -89.05 -0.20 -2.33 16 5 H 0.09 1.47 7.12 -51.93 -0.37 1.10 16 6 C 0.05 0.71 6.52 37.94 0.25 0.95 16 7 O -0.38 -6.24 11.21 -35.23 -0.39 -6.64 16 8 C 0.03 0.59 6.78 37.93 0.26 0.84 16 9 C 0.12 2.41 3.17 -66.36 -0.21 2.19 16 10 H 0.11 2.33 6.57 -51.93 -0.34 1.99 16 11 N -0.64 -14.49 2.76 -173.80 -0.48 -14.97 16 12 C 0.10 2.02 9.14 59.85 0.55 2.57 16 13 C 0.56 15.73 7.61 -12.99 -0.10 15.63 16 14 O -0.58 -18.45 14.40 5.20 0.07 -18.38 16 15 C -0.54 -15.19 8.76 -35.63 -0.31 -15.50 16 16 H 0.07 1.88 5.95 -52.49 -0.31 1.57 16 17 C 0.09 2.43 5.49 -17.36 -0.10 2.33 16 18 N -0.77 -22.82 11.85 55.55 0.66 -22.16 16 19 Si 0.91 20.05 29.56 -169.99 -5.03 15.03 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.61 7.63 -51.93 -0.40 0.22 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.82 7.97 -51.93 -0.41 0.40 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.68 7.75 -51.93 -0.40 0.28 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.67 8.01 -51.93 -0.42 1.25 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.36 6.04 -51.93 -0.31 1.05 16 36 H 0.05 0.79 6.66 -51.93 -0.35 0.44 16 37 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 LS Contribution 298.15 15.07 4.49 4.49 Total: -1.00 -32.71 298.15 -6.28 -38.99 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.83 Total: 1.51 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 0.23 Total: 2.13 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.18 Total: -37.13 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.32 Total: -25.01 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.71 -6.28 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711243573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.086 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds