Wall clock time and date at job start Mon Mar 30 2020 04:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46839 * 2 1 4 4 C 1.52997 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.45821 * 307.60906 * 4 3 2 6 6 C 1.54491 * 110.62642 * 70.29065 * 4 3 2 7 7 O 1.44425 * 104.80304 * 142.68020 * 6 4 3 8 8 C 1.44430 * 105.27535 * 319.49339 * 7 6 4 9 9 C 1.54470 * 104.80554 * 40.50736 * 8 7 6 10 10 H 1.09005 * 110.63325 * 217.31924 * 9 8 7 11 11 N 1.46508 * 110.50961 * 94.66961 * 9 8 7 12 12 C 1.46498 * 119.99735 * 305.35470 * 11 9 8 13 13 C 1.34774 * 120.00118 * 125.35779 * 11 9 8 14 14 O 1.21691 * 119.99918 * 0.02562 * 13 11 9 15 15 C 1.46369 * 120.00119 * 179.97438 * 13 11 9 16 16 H 1.08002 * 120.00206 * 355.24973 * 15 13 11 17 17 C 1.40052 * 120.00310 * 175.24342 * 15 13 11 18 18 N 1.30677 * 119.99659 * 6.28537 * 17 15 13 19 19 Si 1.86789 * 120.00331 * 186.28461 * 17 15 13 20 20 H 1.48507 * 109.47145 * 94.98140 * 19 17 15 21 21 H 1.48500 * 109.47508 * 214.98342 * 19 17 15 22 22 H 1.48505 * 109.47291 * 334.98339 * 19 17 15 23 23 H 1.09004 * 109.46772 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46748 * 299.99273 * 1 2 3 25 25 H 1.08994 * 109.47439 * 59.99657 * 1 2 3 26 26 H 1.09003 * 109.46515 * 240.00243 * 2 1 3 27 27 H 1.08994 * 109.47439 * 120.00342 * 2 1 3 28 28 H 1.08997 * 109.46745 * 60.00521 * 3 2 1 29 29 H 1.08994 * 109.47385 * 300.00376 * 3 2 1 30 30 H 1.08999 * 110.36953 * 261.51313 * 6 4 3 31 31 H 1.09002 * 110.36617 * 23.85135 * 6 4 3 32 32 H 1.09001 * 110.36765 * 281.67775 * 8 7 6 33 33 H 1.08996 * 110.37271 * 159.34888 * 8 7 6 34 34 H 1.09000 * 109.46830 * 90.00155 * 12 11 9 35 35 H 1.09000 * 109.46986 * 209.99898 * 12 11 9 36 36 H 1.08994 * 109.47272 * 329.99984 * 12 11 9 37 37 H 0.96996 * 120.00175 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9513 0.8192 0.8081 6 6 4.1136 0.9552 -1.3621 7 8 5.2827 1.7676 -1.6048 8 6 4.9181 3.0973 -1.1746 9 6 4.1114 2.8842 0.1254 10 1 3.2890 3.5969 0.1884 11 7 4.9837 3.0043 1.2963 12 6 6.1907 2.1803 1.3981 13 6 4.6758 3.8728 2.2799 14 8 3.6729 4.5568 2.1955 15 6 5.5470 3.9924 3.4499 16 1 6.3939 3.3317 3.5624 17 6 5.2824 4.9636 4.4237 18 7 4.1919 5.6802 4.3524 19 14 6.4882 5.2347 5.8243 20 1 7.4109 6.3448 5.4753 21 1 5.7416 5.5817 7.0602 22 1 7.2709 3.9932 6.0510 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9562 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 4.3885 -0.0981 -1.3058 31 1 3.3722 1.1135 -2.1453 32 1 4.3002 3.5841 -1.9291 33 1 5.8110 3.6895 -0.9745 34 1 7.0302 2.7083 0.9458 35 1 6.4085 1.9831 2.4478 36 1 6.0315 1.2366 0.8765 37 1 4.0088 6.3531 5.0265 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711243573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:15 Heat of formation + Delta-G solvation = -117.263864 kcal Electronic energy + Delta-G solvation = -18203.759446 eV Core-core repulsion = 15365.734583 eV Total energy + Delta-G solvation = -2838.024863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12301 -38.97174 -36.30797 -35.54143 -34.61072 -32.16758 -30.16842 -28.17439 -27.11383 -26.72292 -23.99487 -22.71510 -21.44211 -20.52450 -18.48397 -17.82581 -17.38619 -16.66707 -16.59973 -16.10284 -15.69278 -15.43656 -15.16117 -14.43417 -14.05677 -13.92446 -13.55852 -13.48167 -13.34614 -13.09997 -12.94414 -12.76541 -12.38930 -12.31559 -12.19276 -12.01638 -11.98179 -11.70224 -11.61025 -11.40547 -10.94285 -10.77934 -9.79074 -9.06064 -8.31010 -6.85055 1.38929 1.39753 1.55630 2.22564 2.43445 2.78396 3.00926 3.49359 3.69995 3.87199 3.93302 4.12444 4.20116 4.30764 4.35094 4.41690 4.55762 4.66676 4.69948 4.75139 4.81652 4.86463 4.92077 4.96239 5.02616 5.10518 5.15763 5.28036 5.36478 5.39103 5.45790 5.71960 5.82993 6.12711 6.42478 6.86706 7.39260 8.45091 8.65566 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.006724 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.314549 B = 4163.285726 C = 4723.980769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.103 4.103 4 C -0.126 4.126 5 H 0.075 0.925 6 C 0.056 3.944 7 O -0.384 6.384 8 C 0.046 3.954 9 C 0.111 3.889 10 H 0.071 0.929 11 N -0.638 5.638 12 C 0.107 3.893 13 C 0.539 3.461 14 O -0.630 6.630 15 C -0.569 4.569 16 H 0.091 0.909 17 C 0.029 3.971 18 N -0.821 5.821 19 Si 0.995 3.005 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.247 1.247 23 H 0.068 0.932 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.055 0.945 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 -11.111 -8.642 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.146 4.146 5 H 0.093 0.907 6 C -0.020 4.020 7 O -0.303 6.303 8 C -0.032 4.032 9 C 0.006 3.994 10 H 0.089 0.911 11 N -0.374 5.374 12 C -0.036 4.036 13 C 0.345 3.655 14 O -0.518 6.518 15 C -0.605 4.605 16 H 0.109 0.891 17 C -0.186 4.186 18 N -0.450 5.450 19 Si 0.814 3.186 20 H -0.189 1.189 21 H -0.198 1.198 22 H -0.171 1.171 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.526 -10.702 -8.720 13.814 hybrid contribution 0.068 0.701 0.913 1.153 sum -0.458 -10.001 -7.807 12.696 Atomic orbital electron populations 1.21775 0.95306 1.02248 1.01594 1.21511 0.96355 0.95002 1.02576 1.21554 0.92922 0.98340 1.01297 1.22894 0.96795 0.95491 0.99378 0.90671 1.23621 0.87636 0.96483 0.94268 1.89075 1.36431 1.19706 1.85066 1.23670 0.99676 0.85647 0.94229 1.22213 0.93469 0.97285 0.86466 0.91054 1.47796 1.26144 1.43094 1.20322 1.21425 0.86334 0.94202 1.01678 1.18670 0.85249 0.78372 0.83216 1.90532 1.31044 1.49059 1.81149 1.21525 1.13709 1.19990 1.05298 0.89085 1.26985 0.96700 0.93706 1.01177 1.70195 1.24382 1.17509 1.32936 0.85047 0.77733 0.79893 0.75901 1.18851 1.19754 1.17051 0.91280 0.94150 0.92088 0.89869 0.92663 0.94937 0.90939 0.87102 0.90372 0.90357 0.90022 0.94247 0.91895 0.91043 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.12 -2.56 5.81 30.60 0.18 -2.38 16 3 C -0.10 -2.96 4.43 30.59 0.14 -2.82 16 4 C -0.13 -3.88 2.29 -9.78 -0.02 -3.90 16 5 H 0.07 2.49 7.12 -2.39 -0.02 2.48 16 6 C 0.06 1.37 6.52 72.49 0.47 1.84 16 7 O -0.38 -11.59 11.21 -148.98 -1.67 -13.26 16 8 C 0.05 1.51 6.78 72.48 0.49 2.01 16 9 C 0.11 4.40 3.17 46.00 0.15 4.55 16 10 H 0.07 3.32 6.57 -2.38 -0.02 3.31 16 11 N -0.64 -29.67 2.76 -822.01 -2.27 -31.93 16 12 C 0.11 4.06 9.14 127.77 1.17 5.23 16 13 C 0.54 31.71 7.61 86.36 0.66 32.37 16 14 O -0.63 -42.53 14.40 -4.32 -0.06 -42.60 16 15 C -0.57 -32.49 8.76 24.83 0.22 -32.27 16 16 H 0.09 4.68 5.95 -2.91 -0.02 4.67 16 17 C 0.03 1.66 5.49 85.30 0.47 2.12 16 18 N -0.82 -50.59 11.85 21.84 0.26 -50.33 16 19 Si 0.99 41.22 29.56 68.60 2.03 43.25 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.44 7.63 -2.39 -0.02 1.42 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.88 7.97 -2.39 -0.02 1.86 16 30 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 1.60 7.75 -2.39 -0.02 1.58 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.89 8.01 -2.39 -0.02 2.87 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 2.45 6.04 -2.39 -0.01 2.44 16 36 H 0.07 2.33 6.66 -2.39 -0.02 2.32 16 37 H 0.27 15.28 8.29 -92.71 -0.77 14.51 16 Total: -1.00 -74.36 298.15 3.95 -70.41 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 1.04 Total: 20.04 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 4.63 Total: 4.42 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.01 Total: -82.26 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -1.73 Total: -55.85 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -74.36 3.95 -70.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711243573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.854 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds