Wall clock time and date at job start Mon Mar 30 2020 03:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.57162 * 2 1 4 4 C 1.53176 * 109.52567 * 120.15995 * 2 1 3 5 5 C 1.53181 * 109.03560 * 176.88742 * 4 2 1 6 6 C 1.53095 * 109.15940 * 303.01673 * 5 4 2 7 7 H 1.09000 * 109.48076 * 297.62503 * 6 5 4 8 8 C 1.52999 * 109.47563 * 177.60526 * 6 5 4 9 9 N 1.46504 * 109.47240 * 180.02562 * 8 6 5 10 10 C 1.34776 * 120.00233 * 179.97438 * 9 8 6 11 11 O 1.21690 * 119.99976 * 0.02562 * 10 9 8 12 12 C 1.46374 * 120.00046 * 179.97438 * 10 9 8 13 13 H 1.07997 * 119.99904 * 359.97438 * 12 10 9 14 14 C 1.40041 * 120.00125 * 180.02562 * 12 10 9 15 15 N 1.30675 * 120.00078 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00162 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46944 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47406 * 119.99942 * 16 14 12 19 19 H 1.48506 * 109.47013 * 239.99975 * 16 14 12 20 20 O 1.42895 * 109.41568 * 57.61417 * 6 5 4 21 21 C 1.42902 * 114.09785 * 298.83742 * 20 6 5 22 22 H 1.09001 * 109.46900 * 299.84214 * 1 2 3 23 23 H 1.09001 * 109.47505 * 59.84091 * 1 2 3 24 24 H 1.08996 * 109.47038 * 179.83899 * 1 2 3 25 25 H 1.09002 * 109.46917 * 180.16008 * 3 2 1 26 26 H 1.09001 * 109.47550 * 300.15783 * 3 2 1 27 27 H 1.08998 * 109.46837 * 60.16365 * 3 2 1 28 28 H 1.08996 * 109.54020 * 296.75264 * 4 2 1 29 29 H 1.08999 * 109.54211 * 56.93067 * 4 2 1 30 30 H 1.08994 * 109.52035 * 62.92686 * 5 4 2 31 31 H 1.09005 * 109.51661 * 183.05324 * 5 4 2 32 32 H 1.08997 * 109.47459 * 300.00266 * 8 6 5 33 33 H 1.09004 * 109.47543 * 60.00012 * 8 6 5 34 34 H 0.96997 * 119.99579 * 359.97438 * 9 8 6 35 35 H 0.97003 * 120.00058 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.47976 * 301.17466 * 21 20 6 37 37 H 1.09004 * 109.48145 * 181.14340 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4417 0.0000 4 6 2.0419 -0.7253 1.2482 5 6 3.5717 -0.7871 1.1980 6 6 4.0043 -1.4816 -0.0959 7 1 3.6315 -2.5058 -0.1009 8 6 5.5318 -1.4941 -0.1821 9 7 5.9457 -2.1581 -1.4206 10 6 7.2555 -2.2862 -1.7114 11 8 8.0943 -1.8506 -0.9449 12 6 7.6690 -2.9501 -2.9486 13 1 6.9245 -3.3378 -3.6283 14 6 9.0299 -3.0837 -3.2506 15 7 9.9307 -2.6160 -2.4275 16 14 9.5576 -3.9304 -4.8298 17 1 8.3547 -4.3675 -5.5828 18 1 10.3449 -2.9836 -5.6599 19 1 10.3928 -5.1137 -4.5018 20 8 3.4694 -0.7742 -1.2164 21 6 2.0416 -0.7248 -1.2477 22 1 -0.3633 0.5114 0.8914 23 1 -0.3634 0.5163 -0.8885 24 1 -0.3633 -1.0276 -0.0029 25 1 3.1325 1.4397 -0.0029 26 1 1.6778 1.9570 -0.8885 27 1 1.6825 1.9552 0.8914 28 1 1.7280 -0.1825 2.1398 29 1 1.6355 -1.7364 1.2748 30 1 3.9780 0.2240 1.2223 31 1 3.9418 -1.3492 2.0555 32 1 5.9044 -0.4698 -0.1774 33 1 5.9396 -2.0328 0.6733 34 1 5.2771 -2.5056 -2.0314 35 1 10.8734 -2.7082 -2.6368 36 1 1.6431 -1.7391 -1.2678 37 1 1.7158 -0.1884 -2.1390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711386275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:42 Heat of formation + Delta-G solvation = -109.328296 kcal Electronic energy + Delta-G solvation = -17764.246458 eV Core-core repulsion = 14926.565707 eV Total energy + Delta-G solvation = -2837.680751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94792 -37.15062 -35.36551 -33.51664 -32.39165 -31.58701 -28.07079 -27.40343 -26.19103 -25.45924 -23.13998 -21.36584 -19.56828 -18.83620 -17.16506 -16.24853 -15.65342 -15.20073 -15.05560 -14.79431 -14.28826 -13.90721 -13.52404 -13.35576 -12.83356 -12.63506 -12.35149 -12.20811 -11.99927 -11.82831 -11.41189 -11.31399 -11.15627 -10.98325 -10.91032 -10.76275 -10.45383 -10.34939 -10.15187 -10.02056 -9.23611 -8.79245 -7.53088 -7.37726 -6.11423 -4.55746 3.17690 3.25523 3.30492 3.92950 4.16649 4.53230 4.63417 4.65344 4.67171 4.83291 5.11878 5.21884 5.30662 5.39782 5.44552 5.53356 5.60677 5.66602 5.70047 5.74519 5.82446 5.88158 5.88842 5.93234 6.07468 6.11720 6.19491 6.36960 6.46063 6.61506 7.44603 7.50855 8.04475 8.20650 8.42625 9.10151 9.65067 10.68141 10.87417 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048811 B = 0.004734 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.501291 B = 5913.827655 C = 6211.079370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.138 4.138 4 C -0.109 4.109 5 C -0.150 4.150 6 C 0.082 3.918 7 H 0.058 0.942 8 C 0.143 3.857 9 N -0.762 5.762 10 C 0.555 3.445 11 O -0.584 6.584 12 C -0.544 4.544 13 H 0.067 0.933 14 C 0.087 3.913 15 N -0.770 5.770 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.277 1.277 20 O -0.365 6.365 21 C 0.070 3.930 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.383 0.617 35 H 0.266 0.734 36 H 0.046 0.954 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.858 3.433 4.485 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.195 4.195 4 C -0.147 4.147 5 C -0.188 4.188 6 C 0.024 3.976 7 H 0.076 0.924 8 C 0.017 3.983 9 N -0.417 5.417 10 C 0.358 3.642 11 O -0.467 6.467 12 C -0.581 4.581 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.399 5.399 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 O -0.283 6.283 21 C -0.007 4.007 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.214 0.786 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.913 3.876 4.970 18.049 hybrid contribution -0.332 -0.666 -0.801 1.094 sum -17.245 3.210 4.169 18.030 Atomic orbital electron populations 1.21790 0.94265 1.01701 1.01881 1.21217 0.95631 0.96912 0.96520 1.21822 1.02332 0.94260 1.01095 1.21647 0.95523 1.00238 0.97251 1.22195 0.95806 1.02491 0.98307 1.22413 0.94950 0.94474 0.85751 0.92431 1.20889 0.89037 0.98226 0.90099 1.45997 1.08718 1.64632 1.22388 1.18221 0.79313 0.79508 0.87123 1.90589 1.50618 1.53423 1.52112 1.20924 0.92193 1.39738 1.05273 0.91428 1.25706 0.96469 0.93917 0.97109 1.70043 1.01123 1.34941 1.33781 0.86332 0.79104 0.79274 0.82115 1.18799 1.20200 1.20234 1.88055 1.18976 1.76070 1.45225 1.22595 0.82030 0.98947 0.97101 0.92520 0.92511 0.92691 0.91425 0.92834 0.93102 0.91652 0.91973 0.90531 0.90761 0.92794 0.92141 0.78562 0.92275 0.93530 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.49 37.16 0.32 -0.81 16 2 C -0.10 -1.04 0.78 -154.37 -0.12 -1.16 16 3 C -0.14 -1.46 8.08 37.16 0.30 -1.16 16 4 C -0.11 -1.12 4.81 -26.55 -0.13 -1.24 16 5 C -0.15 -1.86 5.05 -26.59 -0.13 -1.99 16 6 C 0.08 1.25 2.73 -26.68 -0.07 1.18 16 7 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 8 C 0.14 2.87 5.37 -4.04 -0.02 2.85 16 9 N -0.76 -18.08 5.44 -61.72 -0.34 -18.41 16 10 C 0.55 16.46 7.75 -12.99 -0.10 16.36 16 11 O -0.58 -19.57 15.02 5.20 0.08 -19.49 16 12 C -0.54 -15.93 9.54 -35.63 -0.34 -16.27 16 13 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 14 C 0.09 2.50 5.50 -17.37 -0.10 2.41 16 15 N -0.77 -23.70 11.83 55.55 0.66 -23.04 16 16 Si 0.91 20.64 29.56 -169.99 -5.02 15.62 16 17 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 O -0.36 -5.77 9.57 -35.23 -0.34 -6.10 16 21 C 0.07 0.84 5.54 37.21 0.21 1.05 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.85 6.14 -51.93 -0.32 0.53 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.99 6.62 -51.93 -0.34 0.64 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.38 8.25 8.33 -40.82 -0.34 7.91 16 35 H 0.27 7.40 8.29 -40.82 -0.34 7.07 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -34.76 299.45 -6.69 -41.45 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.04 Total: 4.26 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.19 Total: 1.21 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.32 Total: -41.45 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.26 Total: -25.59 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.76 -6.69 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711386275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.880 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds