Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.57162 * 2 1 4 4 C 1.53176 * 109.52567 * 120.15995 * 2 1 3 5 5 C 1.53181 * 109.03560 * 176.88742 * 4 2 1 6 6 C 1.53095 * 109.15940 * 303.01673 * 5 4 2 7 7 H 1.09000 * 109.48076 * 297.62503 * 6 5 4 8 8 C 1.52999 * 109.47563 * 177.60526 * 6 5 4 9 9 N 1.46504 * 109.47240 * 180.02562 * 8 6 5 10 10 C 1.34776 * 120.00233 * 179.97438 * 9 8 6 11 11 O 1.21690 * 119.99976 * 0.02562 * 10 9 8 12 12 C 1.46374 * 120.00046 * 179.97438 * 10 9 8 13 13 H 1.07997 * 119.99904 * 359.97438 * 12 10 9 14 14 C 1.40041 * 120.00125 * 180.02562 * 12 10 9 15 15 N 1.30675 * 120.00078 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00162 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46944 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47406 * 119.99942 * 16 14 12 19 19 H 1.48506 * 109.47013 * 239.99975 * 16 14 12 20 20 O 1.42895 * 109.41568 * 57.61417 * 6 5 4 21 21 C 1.42902 * 114.09785 * 298.83742 * 20 6 5 22 22 H 1.09001 * 109.46900 * 299.84214 * 1 2 3 23 23 H 1.09001 * 109.47505 * 59.84091 * 1 2 3 24 24 H 1.08996 * 109.47038 * 179.83899 * 1 2 3 25 25 H 1.09002 * 109.46917 * 180.16008 * 3 2 1 26 26 H 1.09001 * 109.47550 * 300.15783 * 3 2 1 27 27 H 1.08998 * 109.46837 * 60.16365 * 3 2 1 28 28 H 1.08996 * 109.54020 * 296.75264 * 4 2 1 29 29 H 1.08999 * 109.54211 * 56.93067 * 4 2 1 30 30 H 1.08994 * 109.52035 * 62.92686 * 5 4 2 31 31 H 1.09005 * 109.51661 * 183.05324 * 5 4 2 32 32 H 1.08997 * 109.47459 * 300.00266 * 8 6 5 33 33 H 1.09004 * 109.47543 * 60.00012 * 8 6 5 34 34 H 0.96997 * 119.99579 * 359.97438 * 9 8 6 35 35 H 0.97003 * 120.00058 * 180.02562 * 15 14 12 36 36 H 1.08995 * 109.47976 * 301.17466 * 21 20 6 37 37 H 1.09004 * 109.48145 * 181.14340 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4417 0.0000 4 6 2.0419 -0.7253 1.2482 5 6 3.5717 -0.7871 1.1980 6 6 4.0043 -1.4816 -0.0959 7 1 3.6315 -2.5058 -0.1009 8 6 5.5318 -1.4941 -0.1821 9 7 5.9457 -2.1581 -1.4206 10 6 7.2555 -2.2862 -1.7114 11 8 8.0943 -1.8506 -0.9449 12 6 7.6690 -2.9501 -2.9486 13 1 6.9245 -3.3378 -3.6283 14 6 9.0299 -3.0837 -3.2506 15 7 9.9307 -2.6160 -2.4275 16 14 9.5576 -3.9304 -4.8298 17 1 8.3547 -4.3675 -5.5828 18 1 10.3449 -2.9836 -5.6599 19 1 10.3928 -5.1137 -4.5018 20 8 3.4694 -0.7742 -1.2164 21 6 2.0416 -0.7248 -1.2477 22 1 -0.3633 0.5114 0.8914 23 1 -0.3634 0.5163 -0.8885 24 1 -0.3633 -1.0276 -0.0029 25 1 3.1325 1.4397 -0.0029 26 1 1.6778 1.9570 -0.8885 27 1 1.6825 1.9552 0.8914 28 1 1.7280 -0.1825 2.1398 29 1 1.6355 -1.7364 1.2748 30 1 3.9780 0.2240 1.2223 31 1 3.9418 -1.3492 2.0555 32 1 5.9044 -0.4698 -0.1774 33 1 5.9396 -2.0328 0.6733 34 1 5.2771 -2.5056 -2.0314 35 1 10.8734 -2.7082 -2.6368 36 1 1.6431 -1.7391 -1.2678 37 1 1.7158 -0.1884 -2.1390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711386275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = -134.628326 kcal Electronic energy + Delta-G solvation = -17765.343550 eV Core-core repulsion = 14926.565707 eV Total energy + Delta-G solvation = -2838.777843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00726 -39.25966 -36.52891 -35.18352 -34.47582 -33.09128 -29.63091 -28.17203 -27.90970 -26.63429 -24.41191 -22.59346 -21.65953 -19.82569 -19.19784 -17.48329 -17.40116 -16.68277 -16.36826 -15.95933 -15.82946 -15.21689 -15.03947 -14.80997 -14.23351 -14.11119 -13.53607 -13.29408 -13.09617 -13.00244 -12.87908 -12.73819 -12.70485 -12.62401 -12.37079 -11.99183 -11.94613 -11.76015 -11.32256 -11.09669 -10.94292 -10.29583 -9.86369 -9.47259 -8.28965 -6.85441 1.40456 1.41060 1.59301 2.25723 2.46946 2.78792 3.11548 3.62604 3.70303 3.81356 3.84003 4.02054 4.12140 4.15427 4.41316 4.59797 4.64213 4.69511 4.73338 4.78116 4.82138 4.92379 4.96757 5.03688 5.04745 5.15254 5.22422 5.32162 5.32570 5.42007 5.54293 5.88128 6.21753 6.26411 6.37306 6.86810 7.55369 8.49084 8.67759 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048811 B = 0.004734 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.501291 B = 5913.827655 C = 6211.079370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.147 4.147 6 C 0.095 3.905 7 H 0.070 0.930 8 C 0.142 3.858 9 N -0.750 5.750 10 C 0.535 3.465 11 O -0.635 6.635 12 C -0.573 4.573 13 H 0.086 0.914 14 C 0.027 3.973 15 N -0.823 5.823 16 Si 1.001 2.999 17 H -0.247 1.247 18 H -0.268 1.268 19 H -0.266 1.266 20 O -0.394 6.394 21 C 0.063 3.937 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.275 0.725 36 H 0.058 0.942 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.949 2.573 3.579 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.142 4.142 5 C -0.185 4.185 6 C 0.037 3.963 7 H 0.088 0.912 8 C 0.017 3.983 9 N -0.404 5.404 10 C 0.339 3.661 11 O -0.523 6.523 12 C -0.610 4.610 13 H 0.104 0.896 14 C -0.187 4.187 15 N -0.453 5.453 16 Si 0.820 3.180 17 H -0.170 1.170 18 H -0.193 1.193 19 H -0.191 1.191 20 O -0.313 6.313 21 C -0.013 4.013 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.080 3.018 4.070 19.741 hybrid contribution 0.278 -0.345 -0.492 0.662 sum -18.802 2.673 3.578 19.326 Atomic orbital electron populations 1.21744 0.92150 1.02515 1.02688 1.21205 0.97190 0.96086 0.95534 1.21810 1.00597 0.95082 1.01957 1.21653 0.93288 1.01252 0.97983 1.22164 0.97875 1.01606 0.96826 1.22197 0.91163 0.95624 0.87294 0.91222 1.21003 0.92979 0.96116 0.88185 1.45703 1.07280 1.63816 1.23591 1.18668 0.80693 0.79417 0.87296 1.90538 1.52524 1.55591 1.53626 1.21458 0.93615 1.40256 1.05667 0.89585 1.27014 0.96031 0.94123 1.01577 1.70204 1.01992 1.36352 1.36720 0.84928 0.79087 0.77907 0.76057 1.17037 1.19297 1.19109 1.87997 1.21592 1.76281 1.45468 1.22852 0.79854 1.00111 0.98504 0.91514 0.91986 0.91874 0.94081 0.92543 0.91723 0.89964 0.90809 0.91575 0.89863 0.95283 0.92808 0.77182 0.91541 0.92341 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.49 71.98 0.61 -1.12 16 2 C -0.10 -1.80 0.78 -52.09 -0.04 -1.84 16 3 C -0.14 -2.72 8.08 71.98 0.58 -2.14 16 4 C -0.10 -1.86 4.81 30.71 0.15 -1.72 16 5 C -0.15 -3.49 5.05 30.69 0.16 -3.34 16 6 C 0.10 2.87 2.73 30.63 0.08 2.96 16 7 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 8 C 0.14 5.92 5.37 86.38 0.46 6.38 16 9 N -0.75 -36.49 5.44 -467.40 -2.54 -39.03 16 10 C 0.54 32.82 7.75 86.36 0.67 33.48 16 11 O -0.63 -44.53 15.02 -4.32 -0.06 -44.59 16 12 C -0.57 -33.95 9.54 24.83 0.24 -33.71 16 13 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 14 C 0.03 1.57 5.50 85.30 0.47 2.04 16 15 N -0.82 -51.88 11.83 21.83 0.26 -51.62 16 16 Si 1.00 42.08 29.56 68.60 2.03 44.11 16 17 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 O -0.39 -12.29 9.57 -148.98 -1.43 -13.72 16 21 C 0.06 1.39 5.54 72.01 0.40 1.79 16 22 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.04 1.03 6.14 -2.39 -0.01 1.01 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.72 6.62 -2.39 -0.02 1.70 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.39 17.12 8.33 -92.71 -0.77 16.35 16 35 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -77.88 299.45 2.30 -75.58 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.27 Total: 26.49 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 3.78 Total: 2.79 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -2.29 Total: -90.66 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -1.49 Total: -58.31 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -77.88 2.30 -75.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711386275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.049 kcal (2) G-P(sol) polarization free energy of solvation -77.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds