Wall clock time and date at job start Mon Mar 30 2020 03:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.52433 * 2 1 4 4 C 1.53174 * 109.51634 * 120.12702 * 2 1 3 5 5 C 1.53181 * 109.03764 * 62.92740 * 4 2 1 6 6 C 1.53089 * 109.16601 * 56.97731 * 5 4 2 7 7 H 1.09001 * 109.48159 * 62.38182 * 6 5 4 8 8 C 1.52993 * 109.47888 * 182.40813 * 6 5 4 9 9 N 1.46506 * 109.46962 * 184.97619 * 8 6 5 10 10 C 1.34776 * 119.99783 * 180.02562 * 9 8 6 11 11 O 1.21683 * 120.00325 * 359.97438 * 10 9 8 12 12 C 1.46375 * 119.99864 * 180.02562 * 10 9 8 13 13 H 1.08000 * 119.99720 * 6.74666 * 12 10 9 14 14 C 1.40054 * 120.00092 * 186.74471 * 12 10 9 15 15 N 1.30673 * 120.00082 * 6.79122 * 14 12 10 16 16 Si 1.86800 * 120.00158 * 186.51787 * 14 12 10 17 17 H 1.48498 * 109.46821 * 265.29473 * 16 14 12 18 18 H 1.48503 * 109.46804 * 25.29293 * 16 14 12 19 19 H 1.48497 * 109.47335 * 145.29669 * 16 14 12 20 20 O 1.42903 * 109.42311 * 302.39720 * 6 5 4 21 21 C 1.42905 * 114.09565 * 61.13956 * 20 6 5 22 22 H 1.09003 * 109.47058 * 299.87945 * 1 2 3 23 23 H 1.09004 * 109.46726 * 59.87313 * 1 2 3 24 24 H 1.08996 * 109.47443 * 179.87190 * 1 2 3 25 25 H 1.08996 * 109.47421 * 180.12324 * 3 2 1 26 26 H 1.08998 * 109.47341 * 300.12337 * 3 2 1 27 27 H 1.09003 * 109.47198 * 60.12648 * 3 2 1 28 28 H 1.08993 * 109.54650 * 303.05450 * 4 2 1 29 29 H 1.09003 * 109.61190 * 182.83401 * 4 2 1 30 30 H 1.09000 * 109.51986 * 297.06616 * 5 4 2 31 31 H 1.09004 * 109.56989 * 176.91595 * 5 4 2 32 32 H 1.09001 * 109.47122 * 64.97596 * 8 6 5 33 33 H 1.08998 * 109.47363 * 304.97407 * 8 6 5 34 34 H 0.96994 * 120.00032 * 359.97438 * 9 8 6 35 35 H 0.97000 * 120.00055 * 179.71995 * 15 14 12 36 36 H 1.09007 * 109.47404 * 178.87204 * 21 20 6 37 37 H 1.08994 * 109.48119 * 58.85073 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0418 -0.7246 1.2487 5 6 1.5875 -2.1867 1.1993 6 6 2.0969 -2.8278 -0.0942 7 1 3.1869 -2.8199 -0.0991 8 6 1.5967 -4.2712 -0.1796 9 7 2.1802 -4.9214 -1.3556 10 6 1.8791 -6.2051 -1.6347 11 8 1.1230 -6.8242 -0.9096 12 6 2.4625 -6.8550 -2.8094 13 1 3.2164 -6.3444 -3.3902 14 6 2.0431 -8.1388 -3.1801 15 7 1.0404 -8.7029 -2.5604 16 14 2.9120 -9.0416 -4.5654 17 1 2.1824 -8.8141 -5.8387 18 1 4.3012 -8.5326 -4.6932 19 1 2.9431 -10.4957 -4.2658 20 8 1.6100 -2.0875 -1.2153 21 6 2.0416 -0.7256 -1.2472 22 1 -0.3633 0.5120 0.8911 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 -1.0276 -0.0023 25 1 3.1313 1.4410 -0.0022 26 1 1.6767 1.9568 -0.8888 27 1 1.6804 1.9555 0.8911 28 1 1.6356 -0.2465 2.1400 29 1 3.1306 -0.6819 1.2761 30 1 0.4987 -2.2308 1.2236 31 1 1.9930 -2.7242 2.0566 32 1 0.5100 -4.2747 -0.2641 33 1 1.8930 -4.8122 0.7191 34 1 2.7826 -4.4278 -1.9338 35 1 0.7474 -9.5905 -2.8198 36 1 1.6453 -0.2395 -2.1388 37 1 3.1308 -0.6899 -1.2674 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711386278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:44 Heat of formation + Delta-G solvation = -109.892001 kcal Electronic energy + Delta-G solvation = -17751.794947 eV Core-core repulsion = 14914.089752 eV Total energy + Delta-G solvation = -2837.705195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94657 -37.16248 -35.36656 -33.52919 -32.39924 -31.59487 -28.07419 -27.40121 -26.19794 -25.45126 -23.14457 -21.37128 -19.59531 -18.82440 -17.16805 -16.25377 -15.65007 -15.19939 -15.05743 -14.79950 -14.29112 -13.93108 -13.52131 -13.32877 -12.85671 -12.63518 -12.35143 -12.21412 -11.99946 -11.83237 -11.40477 -11.33321 -11.15892 -10.97008 -10.92453 -10.77301 -10.44530 -10.35358 -10.18198 -10.03201 -9.23869 -8.77765 -7.53591 -7.39205 -6.14729 -4.55241 3.18307 3.25273 3.29691 3.93412 4.16339 4.53084 4.63391 4.65039 4.66704 4.82507 5.11685 5.21904 5.30405 5.39330 5.44623 5.52942 5.60723 5.66745 5.70151 5.74560 5.82105 5.87218 5.88722 5.93200 6.07452 6.11883 6.19257 6.36823 6.45372 6.61884 7.45198 7.50430 8.03319 8.19219 8.42050 9.09674 9.63747 10.67338 10.85922 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049623 B = 0.004689 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.116144 B = 5969.673779 C = 6225.176488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.139 4.139 4 C -0.109 4.109 5 C -0.150 4.150 6 C 0.082 3.918 7 H 0.058 0.942 8 C 0.142 3.858 9 N -0.762 5.762 10 C 0.557 3.443 11 O -0.586 6.586 12 C -0.547 4.547 13 H 0.067 0.933 14 C 0.089 3.911 15 N -0.771 5.771 16 Si 0.907 3.093 17 H -0.273 1.273 18 H -0.265 1.265 19 H -0.279 1.279 20 O -0.365 6.365 21 C 0.070 3.930 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.382 0.618 35 H 0.268 0.732 36 H 0.090 0.910 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 17.839 4.684 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.196 4.196 4 C -0.147 4.147 5 C -0.188 4.188 6 C 0.024 3.976 7 H 0.076 0.924 8 C 0.017 3.983 9 N -0.418 5.418 10 C 0.361 3.639 11 O -0.469 6.469 12 C -0.584 4.584 13 H 0.086 0.914 14 C -0.130 4.130 15 N -0.400 5.400 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.189 1.189 19 H -0.204 1.204 20 O -0.284 6.284 21 C -0.007 4.007 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.214 0.786 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.119 17.128 5.115 18.001 hybrid contribution 0.869 0.034 -0.714 1.126 sum 2.989 17.162 4.401 17.967 Atomic orbital electron populations 1.21824 0.93802 1.02790 1.01102 1.21214 0.96977 0.95571 0.96516 1.21789 1.00830 0.95131 1.01882 1.21646 1.00485 0.95276 0.97249 1.22195 1.02603 0.95711 0.98295 1.22413 0.97446 0.92002 0.85725 0.92409 1.20885 0.98510 0.87844 0.91054 1.46020 1.53020 1.14324 1.28409 1.18201 0.80966 0.78769 0.85978 1.90578 1.39916 1.64023 1.52410 1.20879 1.24451 1.01196 1.11842 0.91439 1.25689 0.93792 0.97149 0.96388 1.70000 1.20676 1.13655 1.35683 0.86380 0.80446 0.78798 0.81237 1.19882 1.18873 1.20441 1.88064 1.73790 1.21291 1.45215 1.22591 0.98051 0.82934 0.97097 0.93095 0.92833 0.91428 0.92692 0.92510 0.92515 0.91647 0.91971 0.90530 0.90760 0.92660 0.92124 0.78623 0.92156 0.89211 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.07 37.16 0.30 -1.16 16 2 C -0.10 -1.04 0.78 -154.37 -0.12 -1.16 16 3 C -0.14 -1.13 8.49 37.15 0.32 -0.81 16 4 C -0.11 -1.12 4.81 -26.55 -0.13 -1.24 16 5 C -0.15 -1.86 5.05 -26.59 -0.13 -1.99 16 6 C 0.08 1.26 2.68 -26.69 -0.07 1.18 16 7 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 8 C 0.14 2.87 5.34 -4.04 -0.02 2.84 16 9 N -0.76 -18.06 5.50 -61.72 -0.34 -18.40 16 10 C 0.56 16.52 7.72 -12.99 -0.10 16.41 16 11 O -0.59 -19.61 15.11 5.20 0.08 -19.53 16 12 C -0.55 -15.98 9.53 -35.63 -0.34 -16.32 16 13 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 14 C 0.09 2.56 5.48 -17.36 -0.10 2.47 16 15 N -0.77 -23.73 11.91 55.55 0.66 -23.07 16 16 Si 0.91 20.62 29.56 -169.99 -5.03 15.60 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 O -0.37 -5.80 9.77 -35.23 -0.34 -6.14 16 21 C 0.07 0.84 5.54 37.20 0.21 1.05 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.85 6.14 -51.93 -0.32 0.53 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.99 6.63 -51.93 -0.34 0.64 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.38 8.19 8.45 -40.82 -0.35 7.85 16 35 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -34.76 299.88 -6.69 -41.45 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.05 Total: 4.30 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.19 Total: 1.26 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.32 Total: -41.47 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.27 Total: -25.67 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.76 -6.69 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711386278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.440 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds