Wall clock time and date at job start Mon Mar 30 2020 03:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.52433 * 2 1 4 4 C 1.53174 * 109.51634 * 120.12702 * 2 1 3 5 5 C 1.53181 * 109.03764 * 62.92740 * 4 2 1 6 6 C 1.53089 * 109.16601 * 56.97731 * 5 4 2 7 7 H 1.09001 * 109.48159 * 62.38182 * 6 5 4 8 8 C 1.52993 * 109.47888 * 182.40813 * 6 5 4 9 9 N 1.46506 * 109.46962 * 184.97619 * 8 6 5 10 10 C 1.34776 * 119.99783 * 180.02562 * 9 8 6 11 11 O 1.21683 * 120.00325 * 359.97438 * 10 9 8 12 12 C 1.46375 * 119.99864 * 180.02562 * 10 9 8 13 13 H 1.08000 * 119.99720 * 6.74666 * 12 10 9 14 14 C 1.40054 * 120.00092 * 186.74471 * 12 10 9 15 15 N 1.30673 * 120.00082 * 6.79122 * 14 12 10 16 16 Si 1.86800 * 120.00158 * 186.51787 * 14 12 10 17 17 H 1.48498 * 109.46821 * 265.29473 * 16 14 12 18 18 H 1.48503 * 109.46804 * 25.29293 * 16 14 12 19 19 H 1.48497 * 109.47335 * 145.29669 * 16 14 12 20 20 O 1.42903 * 109.42311 * 302.39720 * 6 5 4 21 21 C 1.42905 * 114.09565 * 61.13956 * 20 6 5 22 22 H 1.09003 * 109.47058 * 299.87945 * 1 2 3 23 23 H 1.09004 * 109.46726 * 59.87313 * 1 2 3 24 24 H 1.08996 * 109.47443 * 179.87190 * 1 2 3 25 25 H 1.08996 * 109.47421 * 180.12324 * 3 2 1 26 26 H 1.08998 * 109.47341 * 300.12337 * 3 2 1 27 27 H 1.09003 * 109.47198 * 60.12648 * 3 2 1 28 28 H 1.08993 * 109.54650 * 303.05450 * 4 2 1 29 29 H 1.09003 * 109.61190 * 182.83401 * 4 2 1 30 30 H 1.09000 * 109.51986 * 297.06616 * 5 4 2 31 31 H 1.09004 * 109.56989 * 176.91595 * 5 4 2 32 32 H 1.09001 * 109.47122 * 64.97596 * 8 6 5 33 33 H 1.08998 * 109.47363 * 304.97407 * 8 6 5 34 34 H 0.96994 * 120.00032 * 359.97438 * 9 8 6 35 35 H 0.97000 * 120.00055 * 179.71995 * 15 14 12 36 36 H 1.09007 * 109.47404 * 178.87204 * 21 20 6 37 37 H 1.08994 * 109.48119 * 58.85073 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0418 -0.7246 1.2487 5 6 1.5875 -2.1867 1.1993 6 6 2.0969 -2.8278 -0.0942 7 1 3.1869 -2.8199 -0.0991 8 6 1.5967 -4.2712 -0.1796 9 7 2.1802 -4.9214 -1.3556 10 6 1.8791 -6.2051 -1.6347 11 8 1.1230 -6.8242 -0.9096 12 6 2.4625 -6.8550 -2.8094 13 1 3.2164 -6.3444 -3.3902 14 6 2.0431 -8.1388 -3.1801 15 7 1.0404 -8.7029 -2.5604 16 14 2.9120 -9.0416 -4.5654 17 1 2.1824 -8.8141 -5.8387 18 1 4.3012 -8.5326 -4.6932 19 1 2.9431 -10.4957 -4.2658 20 8 1.6100 -2.0875 -1.2153 21 6 2.0416 -0.7256 -1.2472 22 1 -0.3633 0.5120 0.8911 23 1 -0.3633 0.5158 -0.8889 24 1 -0.3634 -1.0276 -0.0023 25 1 3.1313 1.4410 -0.0022 26 1 1.6767 1.9568 -0.8888 27 1 1.6804 1.9555 0.8911 28 1 1.6356 -0.2465 2.1400 29 1 3.1306 -0.6819 1.2761 30 1 0.4987 -2.2308 1.2236 31 1 1.9930 -2.7242 2.0566 32 1 0.5100 -4.2747 -0.2641 33 1 1.8930 -4.8122 0.7191 34 1 2.7826 -4.4278 -1.9338 35 1 0.7474 -9.5905 -2.8198 36 1 1.6453 -0.2395 -2.1388 37 1 3.1308 -0.6899 -1.2674 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711386278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:43 Heat of formation + Delta-G solvation = -135.278699 kcal Electronic energy + Delta-G solvation = -17752.895797 eV Core-core repulsion = 14914.089752 eV Total energy + Delta-G solvation = -2838.806045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00760 -39.27114 -36.52920 -35.19741 -34.49036 -33.09088 -29.63298 -28.17055 -27.91365 -26.63091 -24.41632 -22.59969 -21.68051 -19.82605 -19.19482 -17.47379 -17.40849 -16.68247 -16.38212 -15.96253 -15.85105 -15.22243 -15.02949 -14.80791 -14.25509 -14.08409 -13.53786 -13.34110 -13.06633 -13.00643 -12.87897 -12.78956 -12.68348 -12.60034 -12.37602 -12.02124 -11.95611 -11.76380 -11.32510 -11.09773 -10.92096 -10.30258 -9.86592 -9.48504 -8.31978 -6.84578 1.40218 1.42256 1.58525 2.25596 2.46407 2.79698 3.09604 3.61909 3.70105 3.80858 3.83815 4.02445 4.11967 4.15057 4.41042 4.59912 4.64353 4.68903 4.72931 4.77980 4.82015 4.92193 4.96656 5.03636 5.04709 5.15117 5.22261 5.32055 5.32469 5.41915 5.54187 5.87696 6.21357 6.26403 6.36409 6.86618 7.54361 8.48260 8.66641 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049623 B = 0.004689 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.116144 B = 5969.673779 C = 6225.176488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.104 4.104 5 C -0.147 4.147 6 C 0.095 3.905 7 H 0.071 0.929 8 C 0.142 3.858 9 N -0.750 5.750 10 C 0.537 3.463 11 O -0.637 6.637 12 C -0.576 4.576 13 H 0.087 0.913 14 C 0.029 3.971 15 N -0.825 5.825 16 Si 1.001 2.999 17 H -0.261 1.261 18 H -0.249 1.249 19 H -0.272 1.272 20 O -0.395 6.395 21 C 0.063 3.937 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.028 0.972 33 H 0.055 0.945 34 H 0.395 0.605 35 H 0.276 0.724 36 H 0.096 0.904 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 19.419 3.966 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.191 4.191 4 C -0.142 4.142 5 C -0.185 4.185 6 C 0.037 3.963 7 H 0.088 0.912 8 C 0.017 3.983 9 N -0.404 5.404 10 C 0.342 3.658 11 O -0.525 6.525 12 C -0.613 4.613 13 H 0.105 0.895 14 C -0.186 4.186 15 N -0.454 5.454 16 Si 0.820 3.180 17 H -0.185 1.185 18 H -0.172 1.172 19 H -0.196 1.196 20 O -0.314 6.314 21 C -0.013 4.013 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.905 18.782 4.401 19.682 hybrid contribution 0.274 -0.395 -0.473 0.674 sum 4.178 18.386 3.928 19.260 Atomic orbital electron populations 1.21813 0.94406 1.01278 1.01968 1.21202 0.96461 0.96827 0.95523 1.21743 1.01321 0.93336 1.02691 1.21652 1.01249 0.93295 0.97974 1.22165 1.02004 0.97504 0.96802 1.22200 0.97759 0.89065 0.87257 0.91165 1.20995 0.96861 0.91122 0.89320 1.45727 1.52463 1.12901 1.29337 1.18649 0.80684 0.80357 0.86141 1.90528 1.42148 1.65771 1.54032 1.21423 1.25211 1.02450 1.12167 0.89500 1.27006 0.94211 0.97818 0.99549 1.70160 1.22659 1.14511 1.38093 0.84972 0.79403 0.76978 0.76681 1.18528 1.17179 1.19648 1.88007 1.74467 1.23474 1.45493 1.22848 0.98903 0.81069 0.98507 0.91694 0.92555 0.94080 0.91868 0.91996 0.91493 0.89941 0.90799 0.91567 0.89843 0.95370 0.92649 0.77196 0.91460 0.88549 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.07 71.98 0.58 -2.15 16 2 C -0.10 -1.80 0.78 -52.09 -0.04 -1.84 16 3 C -0.13 -1.73 8.49 71.98 0.61 -1.12 16 4 C -0.10 -1.86 4.81 30.71 0.15 -1.72 16 5 C -0.15 -3.49 5.05 30.68 0.16 -3.34 16 6 C 0.10 2.87 2.68 30.62 0.08 2.96 16 7 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 8 C 0.14 5.92 5.34 86.38 0.46 6.38 16 9 N -0.75 -36.44 5.50 -467.41 -2.57 -39.01 16 10 C 0.54 32.92 7.72 86.36 0.67 33.59 16 11 O -0.64 -44.62 15.11 -4.30 -0.06 -44.69 16 12 C -0.58 -34.04 9.53 24.83 0.24 -33.81 16 13 H 0.09 4.62 7.86 -2.91 -0.02 4.59 16 14 C 0.03 1.67 5.48 85.31 0.47 2.14 16 15 N -0.82 -51.98 11.91 21.84 0.26 -51.72 16 16 Si 1.00 42.01 29.56 68.60 2.03 44.04 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 18 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 O -0.39 -12.41 9.77 -148.98 -1.46 -13.86 16 21 C 0.06 1.40 5.54 72.01 0.40 1.80 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.04 1.03 6.14 -2.39 -0.01 1.01 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.72 6.63 -2.39 -0.02 1.70 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.39 17.01 8.45 -92.71 -0.78 16.22 16 35 H 0.28 15.64 8.29 -92.71 -0.77 14.87 16 36 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -77.97 299.88 2.23 -75.74 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.26 Total: 26.62 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 3.77 Total: 2.88 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -2.31 Total: -90.73 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -1.52 Total: -58.55 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -77.97 2.23 -75.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711386278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.539 kcal (2) G-P(sol) polarization free energy of solvation -77.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds