Wall clock time and date at job start Mon Mar 30 2020 03:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48501 * 109.46995 * 270.00184 * 3 2 1 5 5 H 1.48507 * 109.47146 * 30.00057 * 3 2 1 6 6 H 1.48502 * 109.47288 * 149.99731 * 3 2 1 7 7 C 1.37873 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99825 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47237 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46860 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46860 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47234 * 179.97438 * 12 11 10 14 14 C 1.46902 * 110.99800 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46626 * 180.02562 * 14 13 12 16 16 H 1.08995 * 115.55187 * 330.57837 * 15 14 13 17 17 C 1.53001 * 117.49496 * 116.25496 * 15 14 13 18 18 C 1.52998 * 117.49507 * 184.91192 * 15 14 13 19 19 H 1.08996 * 117.50134 * 145.02141 * 18 15 14 20 20 C 1.50695 * 117.50238 * 0.02562 * 18 15 14 21 21 O 1.20834 * 120.00103 * 0.02562 * 20 18 15 22 22 O 1.34237 * 120.00359 * 179.97438 * 20 18 15 23 23 H 0.97002 * 119.99905 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47087 * 59.99657 * 9 7 2 25 25 H 1.08993 * 109.47005 * 299.99905 * 9 7 2 26 26 H 1.08994 * 109.47243 * 59.99710 * 10 9 7 27 27 H 1.09004 * 109.46929 * 300.00232 * 10 9 7 28 28 H 1.08997 * 109.47439 * 60.00546 * 11 10 9 29 29 H 1.09001 * 109.46976 * 299.99809 * 11 10 9 30 30 H 1.09002 * 109.47089 * 59.99910 * 12 11 10 31 31 H 1.09001 * 109.47170 * 299.99690 * 12 11 10 32 32 H 1.00898 * 110.99743 * 303.95080 * 13 12 11 33 33 H 1.08993 * 109.47737 * 60.00169 * 14 13 12 34 34 H 1.09000 * 109.47263 * 299.99731 * 14 13 12 35 35 H 1.09001 * 117.49534 * 214.97777 * 17 15 14 36 36 H 1.08995 * 117.50651 * 359.97438 * 17 15 14 37 37 H 0.96700 * 116.99673 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9870 -0.0001 12 6 2.4745 -6.1500 -0.0008 13 7 1.7400 -7.4222 -0.0008 14 6 2.6646 -8.5638 -0.0008 15 6 1.8644 -9.8680 -0.0014 16 1 0.8883 -9.8209 0.4813 17 6 2.0072 -10.7837 -1.2188 18 6 2.6475 -11.1772 0.1147 19 1 2.1865 -11.9916 0.6734 20 6 4.1478 -11.0836 0.2215 21 8 4.6877 -10.0026 0.2139 22 8 4.8843 -12.2009 0.3262 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8720 -3.6043 0.8904 27 1 2.8720 -3.6043 -0.8895 28 1 0.8540 -5.0446 -0.8903 29 1 0.8533 -5.0450 0.8897 30 1 3.1012 -6.0927 0.8892 31 1 3.1011 -6.0918 -0.8908 32 1 1.1039 -7.4725 0.7809 33 1 3.2925 -8.5229 0.8892 34 1 3.2925 -8.5228 -0.8908 35 1 1.1250 -11.3393 -1.5368 36 1 2.6707 -10.4569 -2.0194 37 1 5.8427 -12.0904 0.3918 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715335380.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:54 Heat of formation + Delta-G solvation = -112.082571 kcal Electronic energy + Delta-G solvation = -16402.020570 eV Core-core repulsion = 13564.220384 eV Total energy + Delta-G solvation = -2837.800185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.55896 -38.79677 -37.44206 -36.82589 -35.64324 -33.88120 -30.45784 -27.58978 -26.25836 -25.15893 -22.89757 -22.40481 -21.75622 -21.03519 -19.19277 -18.44610 -17.60153 -17.04126 -16.60755 -16.54134 -16.06271 -15.68340 -15.21607 -14.85745 -14.47149 -14.08422 -13.87549 -13.64706 -13.31340 -12.99260 -12.86018 -12.61568 -12.44811 -12.28207 -12.21501 -12.11554 -11.57232 -11.41757 -11.40258 -11.29823 -11.12345 -10.95689 -10.55506 -9.34332 -8.20148 -6.31666 1.06745 1.39066 1.41027 1.52198 2.05256 2.40764 2.67567 3.12355 3.14223 3.77678 3.81330 3.92865 4.11291 4.21571 4.35738 4.42755 4.53274 4.60253 4.67194 4.78968 4.84526 4.87343 4.94155 5.00719 5.21123 5.23938 5.28535 5.35186 5.54602 5.61111 5.77780 5.86579 6.05238 6.25970 6.48989 6.85602 6.98892 7.37518 8.91836 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.058926 B = 0.002936 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.056852 B = 9533.011509 C = 9893.828005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.099 4.099 11 C -0.103 4.103 12 C 0.072 3.928 13 N -0.692 5.692 14 C 0.099 3.901 15 C -0.120 4.120 16 H 0.140 0.860 17 C -0.129 4.129 18 C -0.168 4.168 19 H 0.163 0.837 20 C 0.504 3.496 21 O -0.546 6.546 22 O -0.511 6.511 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.346 0.654 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 -26.592 0.520 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.137 4.137 11 C -0.141 4.141 12 C -0.058 4.058 13 N -0.324 5.324 14 C -0.030 4.030 15 C -0.139 4.139 16 H 0.158 0.842 17 C -0.166 4.166 18 C -0.187 4.187 19 H 0.181 0.819 20 C 0.349 3.651 21 O -0.437 6.437 22 O -0.324 6.324 23 H 0.073 0.927 24 H 0.009 0.991 25 H 0.010 0.990 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.111 0.889 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 5.238 -26.270 -0.193 26.787 hybrid contribution 1.316 1.193 0.984 2.031 sum 6.554 -25.076 0.791 25.930 Atomic orbital electron populations 1.70104 1.07816 1.27804 1.51710 1.26020 0.95829 1.03461 0.94696 0.85426 0.78627 0.78301 0.78561 1.19678 1.20518 1.18804 1.21752 0.93535 0.92624 1.50552 0.92357 1.19013 0.94453 0.93117 0.94745 1.21413 0.98061 0.93910 1.00295 1.21451 0.97893 0.92980 1.01774 1.21805 0.95349 0.88576 1.00032 1.60501 1.20247 1.01355 1.50307 1.21503 0.92634 0.88387 1.00444 1.22453 1.00130 0.88333 1.02948 0.84217 1.23261 1.02762 1.01086 0.89444 1.21999 0.86679 1.03142 1.06903 0.81909 1.22833 0.90607 0.81004 0.70698 1.90770 1.74596 1.30666 1.47637 1.84471 1.26926 1.36614 1.84405 0.92715 0.99105 0.99015 0.93329 0.93294 0.92309 0.92439 0.95572 0.91799 0.83579 0.95252 0.92272 0.84342 0.88949 0.71121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -32.48 9.11 25.60 0.23 -32.24 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -4.29 5.15 30.59 0.16 -4.13 16 11 C -0.10 -3.68 5.47 30.59 0.17 -3.52 16 12 C 0.07 2.18 5.68 86.30 0.49 2.67 16 13 N -0.69 -17.85 6.50 -513.86 -3.34 -21.19 16 14 C 0.10 2.34 4.23 86.31 0.36 2.70 16 15 C -0.12 -1.90 5.95 -10.79 -0.06 -1.97 16 16 H 0.14 1.74 8.13 -2.39 -0.02 1.72 16 17 C -0.13 -1.59 9.89 30.62 0.30 -1.29 16 18 C -0.17 -2.17 6.30 -11.52 -0.07 -2.24 16 19 H 0.16 1.21 8.14 -2.39 -0.02 1.20 16 20 C 0.50 8.76 8.09 71.23 0.58 9.34 16 21 O -0.55 -13.59 13.87 21.94 0.30 -13.28 16 22 O -0.51 -6.15 13.42 -51.48 -0.69 -6.84 16 23 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 24 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.35 7.88 8.72 -89.70 -0.78 7.10 16 33 H 0.03 0.79 6.93 -2.39 -0.02 0.77 16 34 H 0.06 1.60 7.30 -2.39 -0.02 1.59 16 35 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 37 H 0.43 1.90 9.10 -74.06 -0.67 1.22 16 Total: -1.00 -72.87 313.93 0.95 -71.92 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -0.40 Total: 8.98 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 2.77 Total: -28.90 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -3.06 Total: -79.36 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.39 Total: -20.13 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -72.87 0.95 -71.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715335380.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.165 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds