Wall clock time and date at job start Mon Mar 30 2020 03:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46982 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47178 * 179.97438 * 12 11 10 14 14 C 1.46892 * 111.00019 * 180.02562 * 13 12 11 15 15 C 1.53008 * 109.47126 * 180.02562 * 14 13 12 16 16 H 1.08999 * 115.54798 * 29.42110 * 15 14 13 17 17 C 1.52994 * 117.50127 * 243.74861 * 15 14 13 18 18 C 1.52998 * 117.49854 * 175.08547 * 15 14 13 19 19 H 1.09000 * 117.49983 * 359.97438 * 18 15 14 20 20 C 1.50699 * 117.50001 * 214.98227 * 18 15 14 21 21 O 1.20827 * 119.99938 * 359.97438 * 20 18 15 22 22 O 1.34231 * 120.00130 * 180.02562 * 20 18 15 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 27 27 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 28 28 H 1.08996 * 109.47435 * 299.99755 * 11 10 9 29 29 H 1.09004 * 109.47044 * 60.00137 * 11 10 9 30 30 H 1.08996 * 109.47142 * 300.00311 * 12 11 10 31 31 H 1.09004 * 109.46812 * 60.00370 * 12 11 10 32 32 H 1.00901 * 110.99829 * 56.04968 * 13 12 11 33 33 H 1.08999 * 109.47249 * 300.00282 * 14 13 12 34 34 H 1.09004 * 109.47202 * 60.00419 * 14 13 12 35 35 H 1.09008 * 117.49879 * 359.97438 * 17 15 14 36 36 H 1.08996 * 117.50275 * 145.01720 * 17 15 14 37 37 H 0.96698 * 117.00230 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0018 13 7 1.7403 -7.4222 -0.0018 14 6 2.6648 -8.5637 -0.0018 15 6 1.8647 -9.8680 -0.0025 16 1 0.8889 -9.8206 -0.4859 17 6 2.0065 -10.7844 1.2144 18 6 2.6479 -11.1771 -0.1188 19 1 3.7331 -11.1093 -0.1954 20 6 2.0109 -12.3027 -0.8925 21 8 0.9213 -12.1514 -1.3922 22 8 2.6537 -13.4735 -1.0256 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6044 0.8894 28 1 0.8535 -5.0452 0.8885 29 1 0.8541 -5.0446 -0.8914 30 1 3.1014 -6.0918 -0.8917 31 1 3.1014 -6.0927 0.8882 32 1 1.1036 -7.4722 -0.7830 33 1 3.2928 -8.5227 -0.8918 34 1 3.2927 -8.5228 0.8882 35 1 2.6701 -10.4584 2.0154 36 1 1.1241 -11.3402 1.5315 37 1 2.2051 -14.1657 -1.5302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715340751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:58 Heat of formation + Delta-G solvation = -97.399774 kcal Electronic energy + Delta-G solvation = -16121.168247 eV Core-core repulsion = 13284.004756 eV Total energy + Delta-G solvation = -2837.163491 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.81368 -38.18274 -36.57743 -36.03345 -34.17066 -32.12665 -28.76077 -26.33566 -25.12070 -23.51980 -21.73434 -21.55758 -20.59148 -20.11225 -18.53671 -17.33974 -16.65364 -16.07186 -15.96424 -14.98550 -14.80147 -14.40086 -13.96769 -13.69522 -13.40915 -12.82866 -12.77404 -12.42909 -12.03218 -12.01473 -11.66132 -11.18052 -11.05647 -10.97486 -10.88334 -10.68379 -10.55980 -10.48458 -10.09875 -9.74957 -9.60573 -8.48288 -8.46254 -8.27629 -6.31611 -4.00053 1.68234 2.50453 3.29439 3.45589 3.49544 3.65264 3.98487 4.25739 4.42360 4.57115 4.60384 4.85279 5.02084 5.15047 5.30294 5.33733 5.39029 5.45787 5.48999 5.53868 5.81618 5.86283 6.05346 6.07145 6.15219 6.40874 6.70802 6.83451 6.91924 7.09926 7.31018 7.48219 7.49137 7.61588 8.28280 8.52074 8.94140 9.72489 11.09240 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.079800 B = 0.002606 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.791537 B =10743.060417 C =10849.064096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.601 4.601 8 H 0.048 0.952 9 C 0.007 3.993 10 C -0.102 4.102 11 C -0.117 4.117 12 C 0.060 3.940 13 N -0.689 5.689 14 C 0.087 3.913 15 C -0.107 4.107 16 H 0.123 0.877 17 C -0.135 4.135 18 C -0.174 4.174 19 H 0.136 0.864 20 C 0.509 3.491 21 O -0.514 6.514 22 O -0.514 6.514 23 H 0.269 0.731 24 H 0.007 0.993 25 H 0.005 0.995 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.342 0.658 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.626 -25.175 -0.070 26.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.192 4.192 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.030 4.030 10 C -0.140 4.140 11 C -0.155 4.155 12 C -0.069 4.069 13 N -0.320 5.320 14 C -0.043 4.043 15 C -0.126 4.126 16 H 0.141 0.859 17 C -0.172 4.172 18 C -0.194 4.194 19 H 0.154 0.846 20 C 0.352 3.648 21 O -0.402 6.402 22 O -0.326 6.326 23 H 0.079 0.921 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 6.258 -23.183 0.696 24.023 hybrid contribution 0.303 -2.270 -1.317 2.642 sum 6.561 -25.453 -0.621 26.292 Atomic orbital electron populations 1.70745 1.06887 1.30629 1.46928 1.25868 0.96606 1.02768 0.93911 0.83512 0.74631 0.75125 0.76713 1.21473 1.21016 1.21551 1.22119 0.94273 0.92187 1.55403 0.93401 1.19228 0.94687 0.93189 0.95883 1.21455 0.98804 0.93412 1.00322 1.21657 0.97948 0.93885 1.02013 1.22065 0.96201 0.88306 1.00279 1.60459 1.19745 1.01489 1.50305 1.21539 0.93671 0.88058 1.01002 1.22482 1.00581 0.88562 1.00950 0.85881 1.23198 1.02304 1.01575 0.90140 1.21837 1.00946 0.93946 1.02646 0.84612 1.22381 0.82884 0.82269 0.77262 1.90742 1.21462 1.82058 1.45921 1.84509 1.52779 1.24327 1.70945 0.92065 0.97501 0.97623 0.93501 0.93243 0.91613 0.92737 0.95405 0.91124 0.84009 0.94553 0.90341 0.86836 0.87918 0.72988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.79 13.65 55.43 0.76 -28.03 16 2 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 3 Si 1.07 25.87 29.90 -169.99 -5.08 20.78 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.60 -17.66 9.11 -34.44 -0.31 -17.98 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 9 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 10 C -0.10 -2.13 5.15 -26.73 -0.14 -2.27 16 11 C -0.12 -1.99 5.47 -26.73 -0.15 -2.14 16 12 C 0.06 0.83 5.69 -3.82 -0.02 0.81 16 13 N -0.69 -8.28 6.50 -113.78 -0.74 -9.02 16 14 C 0.09 0.83 5.97 -3.82 -0.02 0.80 16 15 C -0.11 -0.95 5.46 -90.62 -0.49 -1.45 16 16 H 0.12 1.28 7.66 -51.93 -0.40 0.88 16 17 C -0.14 -0.99 9.88 -26.70 -0.26 -1.25 16 18 C -0.17 -1.34 6.02 -91.73 -0.55 -1.89 16 19 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 20 C 0.51 4.62 8.11 36.01 0.29 4.91 16 21 O -0.51 -6.33 17.02 -18.75 -0.32 -6.65 16 22 O -0.51 -3.39 13.42 -39.26 -0.53 -3.91 16 23 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 24 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 25 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.34 3.94 8.72 -39.29 -0.34 3.60 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 35 H 0.11 0.67 8.03 -51.92 -0.42 0.26 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.41 0.99 9.10 45.56 0.41 1.41 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -34.21 318.08 -8.28 -42.49 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.28 Total: -0.33 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.88 Total: -20.13 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.02 Total: -37.05 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.85 Total: -10.56 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.21 -8.28 -42.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715340751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.907 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds