Wall clock time and date at job start Mon Mar 30 2020 03:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46867 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46982 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47178 * 179.97438 * 12 11 10 14 14 C 1.46892 * 111.00019 * 180.02562 * 13 12 11 15 15 C 1.53008 * 109.47126 * 180.02562 * 14 13 12 16 16 H 1.08999 * 115.54798 * 29.42110 * 15 14 13 17 17 C 1.52994 * 117.50127 * 243.74861 * 15 14 13 18 18 C 1.52998 * 117.49854 * 175.08547 * 15 14 13 19 19 H 1.09000 * 117.49983 * 359.97438 * 18 15 14 20 20 C 1.50699 * 117.50001 * 214.98227 * 18 15 14 21 21 O 1.20827 * 119.99938 * 359.97438 * 20 18 15 22 22 O 1.34231 * 120.00130 * 180.02562 * 20 18 15 23 23 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 25 25 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 26 26 H 1.08996 * 109.46893 * 300.00088 * 10 9 7 27 27 H 1.08996 * 109.47396 * 60.00103 * 10 9 7 28 28 H 1.08996 * 109.47435 * 299.99755 * 11 10 9 29 29 H 1.09004 * 109.47044 * 60.00137 * 11 10 9 30 30 H 1.08996 * 109.47142 * 300.00311 * 12 11 10 31 31 H 1.09004 * 109.46812 * 60.00370 * 12 11 10 32 32 H 1.00901 * 110.99829 * 56.04968 * 13 12 11 33 33 H 1.08999 * 109.47249 * 300.00282 * 14 13 12 34 34 H 1.09004 * 109.47202 * 60.00419 * 14 13 12 35 35 H 1.09008 * 117.49879 * 359.97438 * 17 15 14 36 36 H 1.08996 * 117.50275 * 145.01720 * 17 15 14 37 37 H 0.96698 * 117.00230 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0018 13 7 1.7403 -7.4222 -0.0018 14 6 2.6648 -8.5637 -0.0018 15 6 1.8647 -9.8680 -0.0025 16 1 0.8889 -9.8206 -0.4859 17 6 2.0065 -10.7844 1.2144 18 6 2.6479 -11.1771 -0.1188 19 1 3.7331 -11.1093 -0.1954 20 6 2.0109 -12.3027 -0.8925 21 8 0.9213 -12.1514 -1.3922 22 8 2.6537 -13.4735 -1.0256 23 1 -0.4849 -0.8401 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6044 0.8894 28 1 0.8535 -5.0452 0.8885 29 1 0.8541 -5.0446 -0.8914 30 1 3.1014 -6.0918 -0.8917 31 1 3.1014 -6.0927 0.8882 32 1 1.1036 -7.4722 -0.7830 33 1 3.2928 -8.5227 -0.8918 34 1 3.2927 -8.5228 0.8882 35 1 2.6701 -10.4584 2.0154 36 1 1.1241 -11.3402 1.5315 37 1 2.2051 -14.1657 -1.5302 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715340751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:58 Heat of formation + Delta-G solvation = -121.031816 kcal Electronic energy + Delta-G solvation = -16122.193010 eV Core-core repulsion = 13284.004756 eV Total energy + Delta-G solvation = -2838.188254 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.49413 -38.91005 -37.55884 -36.97907 -35.89281 -33.89009 -30.27557 -27.51755 -26.13066 -25.09682 -23.08060 -22.42351 -21.89133 -21.06979 -19.20230 -18.86433 -18.00564 -17.07235 -16.71982 -16.03497 -15.79886 -15.64076 -15.43209 -15.13206 -14.56868 -14.33564 -14.04243 -13.75755 -13.18233 -12.76800 -12.68615 -12.63224 -12.45661 -12.31684 -12.19718 -11.93848 -11.79221 -11.60872 -11.50646 -11.38622 -11.22617 -10.61841 -10.54741 -9.39522 -8.69816 -6.40127 1.00200 1.51975 1.61917 1.79605 1.94672 2.56928 2.66970 3.15292 3.15688 3.66158 3.74963 3.89974 4.05039 4.13243 4.27031 4.37163 4.45619 4.52423 4.60399 4.66481 4.75001 4.81014 4.84444 4.96472 5.06709 5.11700 5.19543 5.22133 5.48814 5.53640 5.57430 6.00699 6.04204 6.19035 6.37830 6.57675 6.93394 7.42842 8.71013 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.079800 B = 0.002606 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.791537 B =10743.060417 C =10849.064096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.044 4.044 3 Si 1.122 2.878 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.620 4.620 8 H 0.052 0.948 9 C 0.005 3.995 10 C -0.090 4.090 11 C -0.107 4.107 12 C 0.072 3.928 13 N -0.697 5.697 14 C 0.091 3.909 15 C -0.121 4.121 16 H 0.103 0.897 17 C -0.126 4.126 18 C -0.168 4.168 19 H 0.158 0.842 20 C 0.511 3.489 21 O -0.554 6.554 22 O -0.507 6.507 23 H 0.255 0.745 24 H -0.014 1.014 25 H -0.014 1.014 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.343 0.657 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.723 -25.945 0.305 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.241 4.241 3 Si 0.943 3.057 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.658 4.658 8 H 0.070 0.930 9 C -0.032 4.032 10 C -0.129 4.129 11 C -0.146 4.146 12 C -0.057 4.057 13 N -0.329 5.329 14 C -0.037 4.037 15 C -0.139 4.139 16 H 0.121 0.879 17 C -0.162 4.162 18 C -0.187 4.187 19 H 0.176 0.824 20 C 0.356 3.644 21 O -0.446 6.446 22 O -0.321 6.321 23 H 0.064 0.936 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 8.372 -24.014 1.072 25.455 hybrid contribution -0.374 -2.132 -1.446 2.603 sum 7.999 -26.147 -0.373 27.345 Atomic orbital electron populations 1.70889 1.08014 1.29832 1.49007 1.27556 0.96665 1.07150 0.92735 0.82880 0.74155 0.70766 0.77896 1.19628 1.20796 1.19233 1.22583 0.94775 0.93582 1.54872 0.93000 1.19218 0.95274 0.94852 0.93870 1.21285 0.97706 0.93279 1.00602 1.21486 0.98185 0.93414 1.01466 1.21834 0.95147 0.87805 1.00905 1.60415 1.20307 1.01553 1.50586 1.21555 0.93291 0.87111 1.01787 1.22311 1.00007 0.89027 1.02579 0.87931 1.23299 1.02458 1.00317 0.90159 1.21939 1.01786 0.92552 1.02467 0.82441 1.22659 0.82264 0.82981 0.76522 1.90733 1.23249 1.82838 1.47758 1.84473 1.52545 1.24146 1.70924 0.93606 0.99552 0.99605 0.93133 0.92875 0.92536 0.92997 0.94734 0.90519 0.83923 0.93986 0.89188 0.84911 0.88200 0.70929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.13 13.65 21.45 0.29 -59.84 16 2 C -0.04 -2.65 5.46 84.65 0.46 -2.18 16 3 Si 1.12 51.22 29.90 68.60 2.05 53.28 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.62 -36.59 9.11 25.60 0.23 -36.36 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.00 0.27 4.28 29.85 0.13 0.39 16 10 C -0.09 -3.76 5.15 30.59 0.16 -3.60 16 11 C -0.11 -3.61 5.47 30.59 0.17 -3.44 16 12 C 0.07 1.86 5.69 86.31 0.49 2.35 16 13 N -0.70 -15.77 6.50 -513.88 -3.34 -19.11 16 14 C 0.09 1.55 5.97 86.31 0.51 2.07 16 15 C -0.12 -1.98 5.46 -10.79 -0.06 -2.04 16 16 H 0.10 2.14 7.66 -2.39 -0.02 2.13 16 17 C -0.13 -1.57 9.88 30.62 0.30 -1.27 16 18 C -0.17 -2.24 6.02 -11.52 -0.07 -2.31 16 19 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 20 C 0.51 8.65 8.11 71.24 0.58 9.22 16 21 O -0.55 -13.59 17.02 21.96 0.37 -13.22 16 22 O -0.51 -5.73 13.42 -51.43 -0.69 -6.42 16 23 H 0.25 16.53 7.22 -92.71 -0.67 15.86 16 24 H -0.01 -0.80 8.01 -2.39 -0.02 -0.81 16 25 H -0.01 -0.82 8.01 -2.39 -0.02 -0.84 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.34 7.65 8.72 -89.69 -0.78 6.87 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.33 7.88 -2.38 -0.02 1.31 16 35 H 0.13 1.16 8.03 -2.38 -0.02 1.14 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.43 1.35 9.10 -74.06 -0.67 0.68 16 Total: -1.00 -73.95 318.08 1.30 -72.66 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -0.30 Total: 9.83 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 2.91 Total: -37.18 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -3.05 Total: -78.95 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.32 Total: -19.63 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.28 kcal Total: -73.95 1.30 -72.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715340751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.373 kcal (2) G-P(sol) polarization free energy of solvation -73.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds