Wall clock time and date at job start Mon Mar 30 2020 03:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00136 * 2 1 4 4 H 1.48496 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46923 * 300.00177 * 3 2 1 6 6 H 1.48495 * 109.47204 * 59.99837 * 3 2 1 7 7 C 1.37875 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00748 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47019 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47027 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47305 * 180.02562 * 12 11 10 14 14 C 1.46902 * 111.00476 * 179.97438 * 13 12 11 15 15 C 1.52989 * 109.47363 * 180.02562 * 14 13 12 16 16 H 1.09004 * 115.56709 * 330.70215 * 15 14 13 17 17 C 1.53006 * 117.49907 * 116.39545 * 15 14 13 18 18 C 1.52997 * 59.99924 * 107.49013 * 17 15 14 19 19 H 1.09002 * 117.49910 * 252.51140 * 18 17 15 20 20 C 1.50699 * 117.50247 * 107.49467 * 18 17 15 21 21 O 1.20830 * 119.99693 * 291.37494 * 20 18 17 22 22 O 1.34230 * 120.00291 * 111.37032 * 20 18 17 23 23 H 0.97000 * 120.00355 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47108 * 60.00463 * 9 7 2 25 25 H 1.09002 * 109.47227 * 300.00373 * 9 7 2 26 26 H 1.09007 * 109.46885 * 60.00884 * 10 9 7 27 27 H 1.08993 * 109.47818 * 300.00130 * 10 9 7 28 28 H 1.09003 * 109.47128 * 60.00699 * 11 10 9 29 29 H 1.09002 * 109.47545 * 300.00402 * 11 10 9 30 30 H 1.09003 * 109.46771 * 60.00266 * 12 11 10 31 31 H 1.09002 * 109.47111 * 300.00453 * 12 11 10 32 32 H 1.00900 * 110.99963 * 303.95991 * 13 12 11 33 33 H 1.08997 * 109.46658 * 59.99779 * 14 13 12 34 34 H 1.09002 * 109.46655 * 300.00633 * 14 13 12 35 35 H 1.08999 * 117.49661 * 214.97815 * 17 15 14 36 36 H 1.08999 * 117.49552 * 359.97335 * 17 15 14 37 37 H 0.96695 * 116.99690 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 7 1.7400 -7.4222 -0.0018 14 6 2.6644 -8.5639 -0.0031 15 6 1.8644 -9.8679 -0.0037 16 1 0.8876 -9.8208 0.4780 17 6 2.0087 -10.7847 -1.2201 18 6 2.6473 -11.1772 0.1137 19 1 3.7325 -11.1094 0.1914 20 6 2.0093 -12.3028 0.8863 21 8 0.9190 -12.1514 1.3848 22 8 2.6519 -13.4735 1.0206 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8713 -3.6040 -0.8922 28 1 0.8526 -5.0447 -0.8906 29 1 0.8544 -5.0450 0.8894 30 1 3.1017 -6.0922 0.8878 31 1 3.1005 -6.0923 -0.8922 32 1 1.1038 -7.4724 0.7797 33 1 3.2931 -8.5232 0.8864 34 1 3.2918 -8.5224 -0.8935 35 1 1.1269 -11.3407 -1.5387 36 1 2.6733 -10.4586 -2.0201 37 1 2.2025 -14.1657 1.5245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715340754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:00 Heat of formation + Delta-G solvation = -93.348421 kcal Electronic energy + Delta-G solvation = -16090.779367 eV Core-core repulsion = 13253.791556 eV Total energy + Delta-G solvation = -2836.987812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78879 -38.14648 -36.53137 -35.96328 -33.91733 -32.04598 -28.90242 -26.45726 -25.20850 -23.68427 -21.68666 -21.43200 -20.44897 -19.92012 -18.51130 -17.31212 -16.23828 -16.02539 -15.89891 -14.95177 -14.73876 -14.43417 -14.29539 -13.83119 -13.36594 -12.72803 -12.38278 -12.35320 -12.00451 -11.74743 -11.56958 -11.42295 -11.03303 -11.02325 -10.81148 -10.71584 -10.45417 -10.42140 -10.40787 -9.61182 -9.24141 -8.97460 -8.41726 -8.31190 -5.96165 -3.98318 1.70826 2.53109 3.32670 3.32916 3.40162 3.44400 4.03077 4.29180 4.45537 4.49207 4.63651 4.88268 5.05901 5.19663 5.35084 5.38410 5.39497 5.45618 5.53254 5.60224 5.89092 5.91727 6.09059 6.16455 6.25574 6.52817 6.84143 6.96628 7.03099 7.23914 7.37349 7.51522 7.73352 7.89102 8.05164 8.47911 9.09510 9.65506 11.15241 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.079875 B = 0.002598 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.462145 B =10776.361778 C =10882.477749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.060 3.940 13 N -0.689 5.689 14 C 0.087 3.913 15 C -0.107 4.107 16 H 0.123 0.877 17 C -0.135 4.135 18 C -0.174 4.174 19 H 0.136 0.864 20 C 0.509 3.491 21 O -0.514 6.514 22 O -0.514 6.514 23 H 0.259 0.741 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.342 0.658 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 -24.883 0.052 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.320 5.320 14 C -0.043 4.043 15 C -0.125 4.125 16 H 0.141 0.859 17 C -0.172 4.172 18 C -0.194 4.194 19 H 0.154 0.846 20 C 0.352 3.648 21 O -0.402 6.402 22 O -0.326 6.326 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.834 -24.418 -0.720 25.116 hybrid contribution 0.496 0.404 1.334 1.480 sum 6.330 -24.014 0.615 24.842 Atomic orbital electron populations 1.69977 1.06044 1.26405 1.51128 1.25041 0.94852 0.99256 0.95468 0.86554 0.80100 0.83897 0.77549 1.19784 1.21029 1.21054 1.21329 0.93043 0.91210 1.50162 0.92726 1.19102 0.94050 0.91362 0.97188 1.21588 0.99078 0.93954 1.00068 1.21645 0.97882 0.93783 1.02096 1.22086 0.96271 0.88350 1.00194 1.60463 1.19759 1.01500 1.50283 1.21535 0.93683 0.88086 1.00968 1.22488 1.00583 0.88555 1.00900 0.85867 1.23184 1.02319 1.01604 0.90139 1.21827 1.00947 0.93974 1.02653 0.84632 1.22389 0.82905 0.82261 0.77248 1.90742 1.21443 1.82049 1.45940 1.84510 1.52729 1.24345 1.70994 0.93104 0.96581 0.96714 0.93692 0.93427 0.91569 0.92691 0.95474 0.91187 0.84000 0.94584 0.90376 0.87942 0.86843 0.73010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.12 -1.98 5.47 -26.73 -0.15 -2.12 16 12 C 0.06 0.82 5.69 -3.82 -0.02 0.80 16 13 N -0.69 -8.32 6.50 -113.78 -0.74 -9.06 16 14 C 0.09 0.83 5.97 -3.83 -0.02 0.81 16 15 C -0.11 -0.95 5.46 -90.62 -0.50 -1.45 16 16 H 0.12 1.29 7.66 -51.93 -0.40 0.89 16 17 C -0.14 -1.00 9.88 -26.73 -0.26 -1.26 16 18 C -0.17 -1.35 6.02 -91.77 -0.55 -1.90 16 19 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 20 C 0.51 4.64 8.11 36.01 0.29 4.94 16 21 O -0.51 -6.35 17.02 -18.75 -0.32 -6.67 16 22 O -0.51 -3.41 13.42 -39.26 -0.53 -3.94 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.34 3.97 8.72 -39.29 -0.34 3.62 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.11 0.68 8.03 -51.93 -0.42 0.26 16 37 H 0.41 1.01 9.10 45.56 0.41 1.43 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -33.37 319.38 -8.30 -41.67 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.34 Total: -1.03 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.90 Total: -16.00 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.00 Total: -35.75 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.85 Total: -10.61 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.37 -8.30 -41.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715340754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.676 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds