Wall clock time and date at job start Mon Mar 30 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00136 * 2 1 4 4 H 1.48496 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46923 * 300.00177 * 3 2 1 6 6 H 1.48495 * 109.47204 * 59.99837 * 3 2 1 7 7 C 1.37875 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00748 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47019 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47027 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47305 * 180.02562 * 12 11 10 14 14 C 1.46902 * 111.00476 * 179.97438 * 13 12 11 15 15 C 1.52989 * 109.47363 * 180.02562 * 14 13 12 16 16 H 1.09004 * 115.56709 * 330.70215 * 15 14 13 17 17 C 1.53006 * 117.49907 * 116.39545 * 15 14 13 18 18 C 1.52997 * 59.99924 * 107.49013 * 17 15 14 19 19 H 1.09002 * 117.49910 * 252.51140 * 18 17 15 20 20 C 1.50699 * 117.50247 * 107.49467 * 18 17 15 21 21 O 1.20830 * 119.99693 * 291.37494 * 20 18 17 22 22 O 1.34230 * 120.00291 * 111.37032 * 20 18 17 23 23 H 0.97000 * 120.00355 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47108 * 60.00463 * 9 7 2 25 25 H 1.09002 * 109.47227 * 300.00373 * 9 7 2 26 26 H 1.09007 * 109.46885 * 60.00884 * 10 9 7 27 27 H 1.08993 * 109.47818 * 300.00130 * 10 9 7 28 28 H 1.09003 * 109.47128 * 60.00699 * 11 10 9 29 29 H 1.09002 * 109.47545 * 300.00402 * 11 10 9 30 30 H 1.09003 * 109.46771 * 60.00266 * 12 11 10 31 31 H 1.09002 * 109.47111 * 300.00453 * 12 11 10 32 32 H 1.00900 * 110.99963 * 303.95991 * 13 12 11 33 33 H 1.08997 * 109.46658 * 59.99779 * 14 13 12 34 34 H 1.09002 * 109.46655 * 300.00633 * 14 13 12 35 35 H 1.08999 * 117.49661 * 214.97815 * 17 15 14 36 36 H 1.08999 * 117.49552 * 359.97335 * 17 15 14 37 37 H 0.96695 * 116.99690 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 7 1.7400 -7.4222 -0.0018 14 6 2.6644 -8.5639 -0.0031 15 6 1.8644 -9.8679 -0.0037 16 1 0.8876 -9.8208 0.4780 17 6 2.0087 -10.7847 -1.2201 18 6 2.6473 -11.1772 0.1137 19 1 3.7325 -11.1094 0.1914 20 6 2.0093 -12.3028 0.8863 21 8 0.9190 -12.1514 1.3848 22 8 2.6519 -13.4735 1.0206 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 2.8725 -3.6048 0.8878 27 1 2.8713 -3.6040 -0.8922 28 1 0.8526 -5.0447 -0.8906 29 1 0.8544 -5.0450 0.8894 30 1 3.1017 -6.0922 0.8878 31 1 3.1005 -6.0923 -0.8922 32 1 1.1038 -7.4724 0.7797 33 1 3.2931 -8.5232 0.8864 34 1 3.2918 -8.5224 -0.8935 35 1 1.1269 -11.3407 -1.5387 36 1 2.6733 -10.4586 -2.0201 37 1 2.2025 -14.1657 1.5245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715340754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:59 Heat of formation + Delta-G solvation = -116.250724 kcal Electronic energy + Delta-G solvation = -16091.772486 eV Core-core repulsion = 13253.791556 eV Total energy + Delta-G solvation = -2837.980930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.47365 -38.87002 -37.45473 -36.91972 -35.61613 -33.86453 -30.45719 -27.68914 -26.20631 -25.08911 -22.86266 -22.33696 -21.72300 -21.03340 -19.18039 -18.42807 -17.97485 -17.00441 -16.69784 -16.52314 -15.90319 -15.60800 -15.37133 -14.77372 -14.50391 -14.08913 -13.94682 -13.54800 -13.22956 -12.89079 -12.85299 -12.65672 -12.39520 -12.24509 -12.22676 -12.08701 -11.76068 -11.51215 -11.39649 -11.27698 -11.18249 -10.94157 -10.55433 -9.33856 -8.19319 -6.30802 1.02331 1.40174 1.40698 1.54237 1.96980 2.41498 2.69838 3.13427 3.21062 3.69285 3.78467 3.93739 4.14891 4.23003 4.30623 4.40625 4.55626 4.60834 4.68553 4.73972 4.83431 4.87743 4.95334 4.99562 5.21508 5.26461 5.30370 5.38316 5.55481 5.56906 5.79535 5.88182 6.10351 6.26630 6.43423 6.87356 6.95299 7.38608 8.92847 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.079875 B = 0.002598 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.462145 B =10776.361778 C =10882.477749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.107 4.107 12 C 0.072 3.928 13 N -0.698 5.698 14 C 0.091 3.909 15 C -0.120 4.120 16 H 0.102 0.898 17 C -0.126 4.126 18 C -0.168 4.168 19 H 0.158 0.842 20 C 0.511 3.489 21 O -0.554 6.554 22 O -0.508 6.508 23 H 0.263 0.737 24 H -0.011 1.011 25 H -0.012 1.012 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.343 0.657 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.261 -25.500 -0.287 26.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.145 4.145 12 C -0.057 4.057 13 N -0.329 5.329 14 C -0.037 4.037 15 C -0.139 4.139 16 H 0.121 0.879 17 C -0.163 4.163 18 C -0.188 4.188 19 H 0.175 0.825 20 C 0.356 3.644 21 O -0.446 6.446 22 O -0.321 6.321 23 H 0.072 0.928 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.151 0.849 37 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 7.959 -25.079 -1.056 26.333 hybrid contribution -0.197 0.514 1.450 1.551 sum 7.762 -24.565 0.394 25.765 Atomic orbital electron populations 1.70113 1.07891 1.27698 1.51898 1.26046 0.95816 1.03573 0.94810 0.85364 0.79090 0.78594 0.77782 1.18439 1.20338 1.20373 1.21782 0.93601 0.92485 1.50202 0.92089 1.19044 0.94582 0.93428 0.94569 1.21393 0.97936 0.93578 1.00552 1.21479 0.98141 0.93506 1.01414 1.21850 0.95201 0.87802 1.00864 1.60416 1.20344 1.01604 1.50562 1.21548 0.93295 0.87126 1.01762 1.22316 1.00004 0.89035 1.02540 0.87937 1.23285 1.02474 1.00344 0.90160 1.21929 1.01789 0.92572 1.02468 0.82450 1.22666 0.82285 0.82974 0.76508 1.90734 1.23231 1.82830 1.47777 1.84473 1.52495 1.24161 1.70971 0.92797 0.99278 0.99333 0.93090 0.92857 0.92638 0.93089 0.94742 0.90537 0.83940 0.94001 0.89215 0.88232 0.84911 0.70950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 2 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.10 -3.98 5.15 30.59 0.16 -3.82 16 11 C -0.11 -3.63 5.47 30.60 0.17 -3.46 16 12 C 0.07 1.86 5.69 86.31 0.49 2.35 16 13 N -0.70 -15.96 6.50 -513.90 -3.34 -19.30 16 14 C 0.09 1.57 5.97 86.30 0.51 2.08 16 15 C -0.12 -2.00 5.46 -10.80 -0.06 -2.06 16 16 H 0.10 2.17 7.66 -2.38 -0.02 2.15 16 17 C -0.13 -1.60 9.88 30.60 0.30 -1.30 16 18 C -0.17 -2.27 6.02 -11.54 -0.07 -2.34 16 19 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 20 C 0.51 8.72 8.11 71.24 0.58 9.29 16 21 O -0.55 -13.67 17.02 21.95 0.37 -13.30 16 22 O -0.51 -5.79 13.42 -51.42 -0.69 -6.48 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.34 7.75 8.72 -89.69 -0.78 6.97 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.34 7.87 -2.39 -0.02 1.32 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.13 1.18 8.03 -2.39 -0.02 1.16 16 37 H 0.43 1.40 9.10 -74.06 -0.67 0.73 16 Total: -1.00 -72.19 319.38 1.18 -71.01 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -0.40 Total: 8.33 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 2.93 Total: -29.18 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -3.06 Total: -77.28 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.32 Total: -19.78 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -72.19 1.18 -71.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715340754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.243 kcal (2) G-P(sol) polarization free energy of solvation -72.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds