Wall clock time and date at job start Mon Mar 30 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.74955 * 2 1 4 4 C 1.54381 * 110.84435 * 123.46898 * 2 1 3 5 5 O 1.43240 * 107.58517 * 139.54947 * 4 2 1 6 6 C 1.43645 * 109.97179 * 1.71070 * 5 4 2 7 7 H 1.09004 * 110.31107 * 94.48835 * 6 5 4 8 8 C 1.52998 * 110.31003 * 216.65719 * 6 5 4 9 9 C 1.50704 * 109.47385 * 293.54672 * 8 6 5 10 10 O 1.21284 * 119.99611 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99887 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99406 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46675 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00308 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99534 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00268 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47298 * 59.99594 * 17 15 13 19 19 H 1.48504 * 109.46974 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47105 * 299.99503 * 17 15 13 21 21 C 1.54945 * 105.13541 * 335.57081 * 6 5 4 22 22 H 1.09002 * 109.47674 * 297.98269 * 1 2 3 23 23 H 1.09000 * 109.47696 * 57.98203 * 1 2 3 24 24 H 1.09000 * 109.47357 * 177.98091 * 1 2 3 25 25 H 1.09000 * 109.47278 * 182.01611 * 3 2 1 26 26 H 1.08997 * 109.47171 * 302.01669 * 3 2 1 27 27 H 1.09002 * 109.47196 * 62.01979 * 3 2 1 28 28 H 1.09001 * 109.83261 * 20.04024 * 4 2 1 29 29 H 1.08994 * 109.90703 * 259.10086 * 4 2 1 30 30 H 1.09004 * 109.47530 * 53.54550 * 8 6 5 31 31 H 1.09001 * 109.47191 * 173.54744 * 8 6 5 32 32 H 0.96993 * 120.00017 * 359.97438 * 11 9 8 33 33 H 1.08996 * 109.47150 * 299.99699 * 12 11 9 34 34 H 1.09001 * 109.47053 * 59.99789 * 12 11 9 35 35 H 0.97010 * 119.99734 * 180.02562 * 16 15 13 36 36 H 1.09002 * 111.12670 * 154.36193 * 21 6 5 37 37 H 1.08995 * 111.12824 * 278.52527 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0720 1.4307 0.0000 4 6 2.0793 -0.7957 1.2035 5 8 3.2044 -1.5538 0.7439 6 6 3.4464 -1.2795 -0.6452 7 1 4.1935 -0.4929 -0.7510 8 6 3.9050 -2.5493 -1.3651 9 6 5.2560 -2.9637 -0.8415 10 8 5.7988 -2.3077 0.0222 11 7 5.8614 -4.0626 -1.3337 12 6 7.1749 -4.4651 -0.8249 13 6 7.6265 -5.7158 -1.5340 14 1 6.9978 -6.1661 -2.2878 15 6 8.8420 -6.2858 -1.2195 16 7 9.6074 -5.7377 -0.3012 17 14 9.4021 -7.8357 -2.0990 18 1 9.4965 -7.5709 -3.5571 19 1 10.7336 -8.2438 -1.5832 20 1 8.4218 -8.9244 -1.8561 21 6 2.0827 -0.8052 -1.2075 22 1 -0.3634 0.4822 0.9075 23 1 -0.3634 0.5448 -0.8713 24 1 -0.3634 -1.0270 -0.0362 25 1 3.1612 1.4067 -0.0362 26 1 1.6913 1.9635 -0.8713 27 1 1.7499 1.9413 0.9075 28 1 1.3107 -1.4684 1.5840 29 1 2.3925 -0.1094 1.9903 30 1 3.1854 -3.3483 -1.1865 31 1 3.9741 -2.3552 -2.4355 32 1 5.4274 -4.5870 -2.0246 33 1 7.8942 -3.6658 -1.0036 34 1 7.1061 -4.6593 0.2454 35 1 10.4627 -6.1386 -0.0803 36 1 2.2184 -0.1638 -2.0783 37 1 1.4386 -1.6525 -1.4426 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717056252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:31 Heat of formation + Delta-G solvation = -106.833726 kcal Electronic energy + Delta-G solvation = -17373.584004 eV Core-core repulsion = 14536.011426 eV Total energy + Delta-G solvation = -2837.572578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.07584 -38.38501 -34.60505 -34.03411 -32.35587 -31.91238 -28.07069 -27.59488 -26.58196 -25.79347 -22.70217 -21.12467 -19.84245 -19.20503 -17.09642 -16.44246 -15.77079 -15.37865 -15.06584 -14.74515 -14.40677 -14.20984 -13.81170 -13.48872 -13.32344 -12.80658 -12.57787 -12.21395 -12.06916 -11.89362 -11.76377 -11.39219 -11.30883 -10.99796 -10.87085 -10.82660 -10.78463 -10.53765 -10.26472 -9.35301 -9.30417 -8.87424 -8.67388 -7.76911 -6.11634 -4.18444 3.28105 3.32603 3.34322 3.52442 3.89334 4.15309 4.22842 4.40709 4.57728 4.72273 5.02047 5.06802 5.16507 5.23972 5.30017 5.37300 5.45017 5.53231 5.61797 5.62165 5.69541 5.72029 5.76520 5.88969 5.95272 5.98312 6.09155 6.25533 7.24517 7.39468 7.55107 7.60175 7.73605 8.03491 8.73018 8.85528 9.23624 9.48528 10.98598 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066407 B = 0.003978 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.541134 B = 7037.039033 C = 7195.423792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 C -0.139 4.139 4 C 0.057 3.943 5 O -0.359 6.359 6 C 0.102 3.898 7 H 0.077 0.923 8 C -0.143 4.143 9 C 0.498 3.502 10 O -0.545 6.545 11 N -0.718 5.718 12 C 0.250 3.750 13 C -0.543 4.543 14 H 0.062 0.938 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.145 4.145 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.389 0.611 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.266 0.734 36 H 0.082 0.918 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.263 10.562 -2.949 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 C -0.196 4.196 4 C -0.020 4.020 5 O -0.278 6.278 6 C 0.044 3.956 7 H 0.094 0.906 8 C -0.184 4.184 9 C 0.283 3.717 10 O -0.423 6.423 11 N -0.366 5.366 12 C 0.129 3.871 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.182 4.182 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.221 0.779 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.529 10.860 -2.085 20.726 hybrid contribution 0.045 -1.011 -0.881 1.341 sum -17.483 9.850 -2.966 20.285 Atomic orbital electron populations 1.21746 0.93374 1.02081 1.01978 1.22118 0.96386 0.96257 0.95467 1.21827 1.01603 0.94294 1.01885 1.23242 0.88915 0.94112 0.95771 1.88607 1.48275 1.66307 1.24654 1.22631 0.95463 0.95997 0.81500 0.90553 1.21887 0.96809 0.98813 1.00868 1.20337 0.86743 0.81678 0.82987 1.90677 1.66272 1.53883 1.31477 1.46456 1.22531 1.26680 1.40981 1.19063 0.77950 0.94925 0.95144 1.21211 1.04110 1.10204 1.22602 0.91998 1.24960 0.96262 0.97735 0.95107 1.69974 1.11614 1.39986 1.30766 0.86479 0.77907 0.82774 0.79748 1.20099 1.21090 1.20083 1.23453 0.96762 1.00093 0.97921 0.92376 0.92302 0.92276 0.91964 0.92338 0.92291 0.91673 0.91714 0.88858 0.88325 0.77909 0.95683 0.95639 0.92436 0.89911 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 8.50 37.16 0.32 -0.68 16 2 C -0.10 -0.98 0.94 -152.57 -0.14 -1.12 16 3 C -0.14 -1.23 8.47 37.16 0.31 -0.92 16 4 C 0.06 0.69 6.99 37.88 0.26 0.96 16 5 O -0.36 -6.06 10.41 -47.08 -0.49 -6.55 16 6 C 0.10 1.46 2.63 -25.71 -0.07 1.39 16 7 H 0.08 1.19 7.63 -51.93 -0.40 0.79 16 8 C -0.14 -2.10 5.45 -27.88 -0.15 -2.25 16 9 C 0.50 10.46 7.73 -10.98 -0.08 10.37 16 10 O -0.54 -13.93 15.54 -6.30 -0.10 -14.02 16 11 N -0.72 -15.76 5.55 -61.47 -0.34 -16.10 16 12 C 0.25 6.89 5.43 -5.19 -0.03 6.86 16 13 C -0.54 -15.12 9.28 -34.44 -0.32 -15.44 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 17 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C -0.14 -1.45 5.53 -24.48 -0.14 -1.59 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 25 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.72 7.81 -51.93 -0.41 0.32 16 29 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.39 7.24 8.32 -40.82 -0.34 6.90 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16 37 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -33.97 306.31 -6.84 -40.81 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.11 Total: 1.77 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.13 Total: -0.72 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.40 Total: -42.06 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.59 Total: -20.57 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.97 -6.84 -40.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717056252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.024 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds