Wall clock time and date at job start Mon Mar 30 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.74955 * 2 1 4 4 C 1.54381 * 110.84435 * 123.46898 * 2 1 3 5 5 O 1.43240 * 107.58517 * 139.54947 * 4 2 1 6 6 C 1.43645 * 109.97179 * 1.71070 * 5 4 2 7 7 H 1.09004 * 110.31107 * 94.48835 * 6 5 4 8 8 C 1.52998 * 110.31003 * 216.65719 * 6 5 4 9 9 C 1.50704 * 109.47385 * 293.54672 * 8 6 5 10 10 O 1.21284 * 119.99611 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99887 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99406 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46675 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00308 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99534 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00268 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99655 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47298 * 59.99594 * 17 15 13 19 19 H 1.48504 * 109.46974 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47105 * 299.99503 * 17 15 13 21 21 C 1.54945 * 105.13541 * 335.57081 * 6 5 4 22 22 H 1.09002 * 109.47674 * 297.98269 * 1 2 3 23 23 H 1.09000 * 109.47696 * 57.98203 * 1 2 3 24 24 H 1.09000 * 109.47357 * 177.98091 * 1 2 3 25 25 H 1.09000 * 109.47278 * 182.01611 * 3 2 1 26 26 H 1.08997 * 109.47171 * 302.01669 * 3 2 1 27 27 H 1.09002 * 109.47196 * 62.01979 * 3 2 1 28 28 H 1.09001 * 109.83261 * 20.04024 * 4 2 1 29 29 H 1.08994 * 109.90703 * 259.10086 * 4 2 1 30 30 H 1.09004 * 109.47530 * 53.54550 * 8 6 5 31 31 H 1.09001 * 109.47191 * 173.54744 * 8 6 5 32 32 H 0.96993 * 120.00017 * 359.97438 * 11 9 8 33 33 H 1.08996 * 109.47150 * 299.99699 * 12 11 9 34 34 H 1.09001 * 109.47053 * 59.99789 * 12 11 9 35 35 H 0.97010 * 119.99734 * 180.02562 * 16 15 13 36 36 H 1.09002 * 111.12670 * 154.36193 * 21 6 5 37 37 H 1.08995 * 111.12824 * 278.52527 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0720 1.4307 0.0000 4 6 2.0793 -0.7957 1.2035 5 8 3.2044 -1.5538 0.7439 6 6 3.4464 -1.2795 -0.6452 7 1 4.1935 -0.4929 -0.7510 8 6 3.9050 -2.5493 -1.3651 9 6 5.2560 -2.9637 -0.8415 10 8 5.7988 -2.3077 0.0222 11 7 5.8614 -4.0626 -1.3337 12 6 7.1749 -4.4651 -0.8249 13 6 7.6265 -5.7158 -1.5340 14 1 6.9978 -6.1661 -2.2878 15 6 8.8420 -6.2858 -1.2195 16 7 9.6074 -5.7377 -0.3012 17 14 9.4021 -7.8357 -2.0990 18 1 9.4965 -7.5709 -3.5571 19 1 10.7336 -8.2438 -1.5832 20 1 8.4218 -8.9244 -1.8561 21 6 2.0827 -0.8052 -1.2075 22 1 -0.3634 0.4822 0.9075 23 1 -0.3634 0.5448 -0.8713 24 1 -0.3634 -1.0270 -0.0362 25 1 3.1612 1.4067 -0.0362 26 1 1.6913 1.9635 -0.8713 27 1 1.7499 1.9413 0.9075 28 1 1.3107 -1.4684 1.5840 29 1 2.3925 -0.1094 1.9903 30 1 3.1854 -3.3483 -1.1865 31 1 3.9741 -2.3552 -2.4355 32 1 5.4274 -4.5870 -2.0246 33 1 7.8942 -3.6658 -1.0036 34 1 7.1061 -4.6593 0.2454 35 1 10.4627 -6.1386 -0.0803 36 1 2.2184 -0.1638 -2.0783 37 1 1.4386 -1.6525 -1.4426 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717056252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:31 Heat of formation + Delta-G solvation = -131.366835 kcal Electronic energy + Delta-G solvation = -17374.647839 eV Core-core repulsion = 14536.011426 eV Total energy + Delta-G solvation = -2838.636414 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.18177 -40.02356 -36.14466 -35.44314 -34.35378 -33.21568 -29.74025 -28.25358 -27.93389 -26.82642 -24.67721 -22.40029 -21.30845 -20.31673 -18.88900 -17.74029 -17.27653 -17.07326 -16.43739 -16.20368 -15.98653 -15.46627 -14.96206 -14.50518 -14.33078 -14.10640 -13.96094 -13.93252 -13.59468 -12.96544 -12.84954 -12.74920 -12.62298 -12.48263 -12.29625 -12.22060 -11.69282 -11.61973 -11.50810 -11.38451 -10.79244 -10.65624 -10.41263 -9.79726 -8.29040 -6.46523 1.42613 1.47551 1.55742 1.84931 2.33186 2.61943 2.95436 3.05345 3.40849 3.75741 3.86437 3.98602 4.08880 4.20329 4.36771 4.48060 4.63301 4.67567 4.76458 4.79356 4.84950 4.91732 5.02297 5.05857 5.12607 5.16154 5.20350 5.23555 5.33480 5.46735 5.49981 5.72241 5.85196 6.22723 6.64986 6.95852 7.23419 7.56603 8.83265 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066407 B = 0.003978 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.541134 B = 7037.039033 C = 7195.423792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C -0.139 4.139 4 C 0.046 3.954 5 O -0.403 6.403 6 C 0.092 3.908 7 H 0.052 0.948 8 C -0.128 4.128 9 C 0.490 3.510 10 O -0.599 6.599 11 N -0.712 5.712 12 C 0.266 3.734 13 C -0.557 4.557 14 H 0.086 0.914 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.988 3.012 18 H -0.260 1.260 19 H -0.285 1.285 20 H -0.261 1.261 21 C -0.131 4.131 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.409 0.591 33 H -0.015 1.015 34 H -0.019 1.019 35 H 0.269 0.731 36 H 0.104 0.896 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.729 9.793 -5.387 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 C -0.196 4.196 4 C -0.031 4.031 5 O -0.324 6.324 6 C 0.034 3.966 7 H 0.070 0.930 8 C -0.168 4.168 9 C 0.278 3.722 10 O -0.480 6.480 11 N -0.362 5.362 12 C 0.143 3.857 13 C -0.595 4.595 14 H 0.104 0.896 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.811 3.189 18 H -0.184 1.184 19 H -0.211 1.211 20 H -0.186 1.186 21 C -0.168 4.168 22 H 0.082 0.918 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.244 0.756 33 H 0.003 0.997 34 H -0.001 1.001 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.053 10.096 -4.558 22.909 hybrid contribution 0.819 -0.694 -0.031 1.074 sum -19.235 9.402 -4.589 21.896 Atomic orbital electron populations 1.21720 0.91176 1.02717 1.03062 1.22119 0.97940 0.95857 0.93741 1.21837 1.00181 0.94421 1.03161 1.23472 0.88163 0.94429 0.97003 1.88564 1.50160 1.67326 1.26309 1.22744 0.97518 0.95168 0.81127 0.93035 1.21948 0.92309 0.99659 1.02838 1.21588 0.88597 0.80243 0.81765 1.90652 1.68155 1.55324 1.33877 1.46221 1.20838 1.27595 1.41551 1.18499 0.80017 0.94206 0.92993 1.21611 1.04793 1.10098 1.23004 0.89636 1.26138 0.96246 1.01737 0.95711 1.70153 1.12216 1.42136 1.32662 0.85159 0.77310 0.77686 0.78752 1.18430 1.21101 1.18594 1.23427 0.93912 1.01019 0.98448 0.91816 0.90715 0.91907 0.94230 0.90371 0.91696 0.90663 0.92424 0.86410 0.84204 0.75561 0.99711 1.00143 0.92247 0.87739 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.50 71.98 0.61 -0.88 16 2 C -0.10 -1.63 0.94 -50.92 -0.05 -1.68 16 3 C -0.14 -2.25 8.47 71.98 0.61 -1.64 16 4 C 0.05 1.10 6.99 72.45 0.51 1.61 16 5 O -0.40 -13.83 10.41 -137.65 -1.43 -15.26 16 6 C 0.09 2.57 2.63 31.26 0.08 2.65 16 7 H 0.05 1.66 7.63 -2.39 -0.02 1.64 16 8 C -0.13 -3.50 5.45 29.85 0.16 -3.33 16 9 C 0.49 20.94 7.73 87.66 0.68 21.61 16 10 O -0.60 -32.31 15.54 8.29 0.13 -32.18 16 11 N -0.71 -31.61 5.55 -466.78 -2.59 -34.20 16 12 C 0.27 15.34 5.43 85.63 0.46 15.81 16 13 C -0.56 -31.25 9.28 25.60 0.24 -31.01 16 14 H 0.09 4.28 7.60 -2.91 -0.02 4.26 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 17 Si 0.99 43.03 29.54 68.60 2.03 45.05 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 C -0.13 -2.22 5.53 32.05 0.18 -2.04 16 22 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.70 8.12 -2.39 -0.02 0.68 16 25 H 0.04 0.81 7.52 -2.39 -0.02 0.80 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 1.61 7.81 -2.39 -0.02 1.59 16 29 H 0.06 1.41 7.84 -2.39 -0.02 1.39 16 30 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 31 H 0.14 2.68 8.14 -2.39 -0.02 2.67 16 32 H 0.41 14.67 8.32 -92.71 -0.77 13.90 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 35 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 36 H 0.10 1.35 8.04 -2.39 -0.02 1.33 16 37 H 0.10 1.36 7.94 -2.39 -0.02 1.34 16 Total: -1.00 -78.90 306.31 2.63 -76.27 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.27 Total: 16.38 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 3.94 Total: 1.61 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -2.30 Total: -91.87 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -1.30 Total: -47.44 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -78.90 2.63 -76.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717056252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.101 kcal (2) G-P(sol) polarization free energy of solvation -78.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds