Wall clock time and date at job start Mon Mar 30 2020 03:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37103 * 119.99731 * 2 1 4 4 H 1.08003 * 119.99310 * 155.96698 * 3 2 1 5 5 C 1.38947 * 120.00300 * 335.68685 * 3 2 1 6 6 N 1.31413 * 119.99931 * 348.77999 * 5 3 2 7 7 Si 1.86795 * 120.00205 * 168.77803 * 5 3 2 8 8 H 1.48507 * 109.47058 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47359 * 120.00128 * 7 5 3 10 10 H 1.48504 * 109.47397 * 240.00077 * 7 5 3 11 11 C 1.34771 * 120.00077 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00022 * 180.02562 * 11 2 1 13 13 C 1.50705 * 120.00173 * 359.97438 * 11 2 1 14 14 C 1.52996 * 109.47283 * 180.02562 * 13 11 2 15 15 H 1.09004 * 109.87402 * 53.99252 * 14 13 11 16 16 C 1.54099 * 109.87934 * 175.00122 * 14 13 11 17 17 C 1.54808 * 104.18794 * 121.45391 * 16 14 13 18 18 C 1.53001 * 110.90624 * 139.08029 * 17 16 14 19 19 C 1.53001 * 110.90555 * 262.64758 * 17 16 14 20 20 C 1.54995 * 102.09313 * 20.88212 * 17 16 14 21 21 O 1.43742 * 109.87881 * 292.83402 * 14 13 11 22 22 H 1.09000 * 109.47160 * 92.82994 * 1 2 3 23 23 H 1.08999 * 109.46710 * 212.82923 * 1 2 3 24 24 H 1.09002 * 109.47165 * 332.82868 * 1 2 3 25 25 H 0.97001 * 120.00096 * 179.97438 * 6 5 3 26 26 H 1.09004 * 109.46967 * 300.00149 * 13 11 2 27 27 H 1.09000 * 109.46797 * 60.00305 * 13 11 2 28 28 H 1.09003 * 110.48404 * 240.13196 * 16 14 13 29 29 H 1.09003 * 110.48853 * 2.64663 * 16 14 13 30 30 H 1.08995 * 109.47265 * 60.00044 * 18 17 16 31 31 H 1.09008 * 109.47043 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.47256 * 299.99347 * 18 17 16 33 33 H 1.08997 * 109.47144 * 60.00007 * 19 17 16 34 34 H 1.08999 * 109.46812 * 180.02562 * 19 17 16 35 35 H 1.08993 * 109.47204 * 299.99727 * 19 17 16 36 36 H 1.08990 * 110.62079 * 81.47687 * 20 17 16 37 37 H 1.09002 * 110.61824 * 204.47437 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1603 1.2278 0.3810 5 6 1.5482 2.3373 -0.4954 6 7 0.4184 2.2526 -1.1613 7 14 2.3442 4.0037 -0.2149 8 1 3.6003 3.8285 0.5579 9 1 2.6519 4.6322 -1.5247 10 1 1.4132 4.8754 0.5458 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 1 3.0785 -3.5252 0.8287 16 6 1.6229 -4.9716 0.1258 17 6 2.0320 -5.7606 -1.1418 18 6 2.2831 -7.2331 -0.8110 19 6 0.9721 -5.6226 -2.2366 20 6 3.3486 -5.0538 -1.5533 21 8 3.0960 -3.6658 -1.2464 22 1 -0.3633 -0.0507 -1.0264 23 1 -0.3633 -0.8635 0.5571 24 1 -0.3633 0.9143 0.4693 25 1 -0.0023 3.0555 -1.5069 26 1 0.7591 -2.5302 0.8897 27 1 0.7585 -2.5298 -0.8903 28 1 1.9359 -5.5038 1.0240 29 1 0.5464 -4.8006 0.1403 30 1 1.3739 -7.6739 -0.4023 31 1 2.5695 -7.7656 -1.7181 32 1 3.0854 -7.3090 -0.0771 33 1 0.8568 -4.5713 -2.5002 34 1 1.2829 -6.1862 -3.1162 35 1 0.0214 -6.0124 -1.8730 36 1 4.1861 -5.4304 -0.9663 37 1 3.5368 -5.1831 -2.6192 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717058491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:35 Heat of formation + Delta-G solvation = -85.648441 kcal Electronic energy + Delta-G solvation = -18076.515464 eV Core-core repulsion = 15239.861549 eV Total energy + Delta-G solvation = -2836.653915 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80984 -38.05400 -34.65669 -34.14674 -31.92594 -31.19803 -27.48048 -27.29940 -26.09137 -25.58539 -24.02143 -21.16529 -19.43562 -18.63844 -16.76026 -16.13353 -15.46414 -15.35036 -15.11025 -14.34965 -14.16383 -13.91348 -13.73025 -13.30813 -12.80726 -12.70988 -12.11800 -11.97660 -11.76427 -11.49073 -11.37278 -11.20459 -11.09196 -11.02263 -10.83129 -10.67194 -10.52572 -10.33256 -10.23061 -10.13644 -9.14318 -8.91778 -8.20771 -7.53059 -6.21138 -3.77293 3.21706 3.31117 3.38531 4.02803 4.21381 4.23154 4.53009 4.73896 4.90676 4.98490 5.23256 5.28783 5.33880 5.37656 5.55365 5.64050 5.65364 5.80729 5.82253 5.85572 5.92060 6.00634 6.01634 6.09466 6.17284 6.23282 6.36669 6.49615 6.55788 6.95048 7.29159 7.39827 7.66745 8.26748 8.62029 9.32225 9.55799 10.14152 10.84022 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050263 B = 0.005381 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.938316 B = 5201.939170 C = 5393.049127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.455 5.455 3 C -0.301 4.301 4 H 0.097 0.903 5 C 0.027 3.973 6 N -0.887 5.887 7 Si 0.925 3.075 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.282 1.282 11 C 0.453 3.547 12 O -0.578 6.578 13 C -0.130 4.130 14 C 0.100 3.900 15 H 0.070 0.930 16 C -0.145 4.145 17 C -0.102 4.102 18 C -0.135 4.135 19 C -0.135 4.135 20 C 0.051 3.949 21 O -0.348 6.348 22 H 0.050 0.950 23 H 0.023 0.977 24 H 0.072 0.928 25 H 0.265 0.735 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -15.114 1.062 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.175 5.175 3 C -0.429 4.429 4 H 0.114 0.886 5 C -0.175 4.175 6 N -0.528 5.528 7 Si 0.752 3.248 8 H -0.193 1.193 9 H -0.208 1.208 10 H -0.208 1.208 11 C 0.240 3.760 12 O -0.461 6.461 13 C -0.171 4.171 14 C 0.041 3.959 15 H 0.088 0.912 16 C -0.183 4.183 17 C -0.102 4.102 18 C -0.192 4.192 19 C -0.192 4.192 20 C -0.026 4.026 21 O -0.266 6.266 22 H 0.069 0.931 23 H 0.041 0.959 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.961 -14.761 0.856 14.916 hybrid contribution -0.024 0.733 0.109 0.741 sum -1.984 -14.028 0.966 14.201 Atomic orbital electron populations 1.21436 0.81469 0.99378 1.00609 1.43596 1.05330 1.04817 1.63796 1.19685 1.00297 0.84286 1.38626 0.88575 1.25325 0.96680 1.00026 0.95446 1.70004 1.18573 1.29210 1.34976 0.85886 0.79191 0.81671 0.78084 1.19305 1.20830 1.20801 1.19996 0.88133 0.84746 0.83089 1.90529 1.13898 1.87037 1.54683 1.21789 0.98243 0.94039 1.03009 1.22389 0.92601 0.92810 0.88058 0.91160 1.23183 1.01583 0.95924 0.97598 1.22134 0.96710 0.95532 0.95840 1.21744 1.01591 0.94465 1.01401 1.21756 0.97459 1.02711 0.97282 1.23604 0.95220 0.83010 1.00789 1.89105 1.75928 1.22600 1.39007 0.93126 0.95876 0.90932 0.92513 0.89609 0.89774 0.90828 0.90355 0.92448 0.92514 0.92490 0.91653 0.92703 0.92623 0.92679 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.66 8.45 59.85 0.51 3.16 16 2 N -0.46 -12.22 3.01 -122.19 -0.37 -12.59 16 3 C -0.30 -8.77 9.25 -14.93 -0.14 -8.90 16 4 H 0.10 2.93 7.44 -52.48 -0.39 2.54 16 5 C 0.03 0.75 5.08 -17.47 -0.09 0.66 16 6 N -0.89 -24.57 10.74 55.50 0.60 -23.97 16 7 Si 0.92 21.52 29.57 -169.99 -5.03 16.49 16 8 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 C 0.45 11.61 7.53 -10.99 -0.08 11.52 16 12 O -0.58 -16.94 15.22 -5.75 -0.09 -17.03 16 13 C -0.13 -2.49 3.78 -27.88 -0.11 -2.60 16 14 C 0.10 1.75 2.93 -26.16 -0.08 1.67 16 15 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 16 C -0.15 -1.84 5.80 -25.20 -0.15 -1.99 16 17 C -0.10 -1.19 0.99 -152.50 -0.15 -1.34 16 18 C -0.13 -1.22 8.55 37.16 0.32 -0.90 16 19 C -0.13 -1.51 8.53 37.16 0.32 -1.19 16 20 C 0.05 0.72 6.63 38.21 0.25 0.98 16 21 O -0.35 -6.82 10.57 -46.53 -0.49 -7.31 16 22 H 0.05 1.21 7.77 -51.93 -0.40 0.80 16 23 H 0.02 0.43 6.56 -51.93 -0.34 0.09 16 24 H 0.07 1.76 6.84 -51.93 -0.36 1.41 16 25 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.09 1.40 7.40 -51.93 -0.38 1.01 16 27 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 28 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 29 H 0.08 0.91 7.43 -51.93 -0.39 0.53 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.72 8.01 -51.93 -0.42 0.31 16 37 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -33.26 298.47 -6.28 -39.54 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -6.00 Total: -0.69 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 0.61 Total: 1.07 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.23 Total: -36.56 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.58 Total: -24.34 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.26 -6.28 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717058491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.113 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds