Wall clock time and date at job start Mon Mar 30 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37103 * 119.99731 * 2 1 4 4 H 1.08003 * 119.99310 * 155.96698 * 3 2 1 5 5 C 1.38947 * 120.00300 * 335.68685 * 3 2 1 6 6 N 1.31413 * 119.99931 * 348.77999 * 5 3 2 7 7 Si 1.86795 * 120.00205 * 168.77803 * 5 3 2 8 8 H 1.48507 * 109.47058 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47359 * 120.00128 * 7 5 3 10 10 H 1.48504 * 109.47397 * 240.00077 * 7 5 3 11 11 C 1.34771 * 120.00077 * 180.02562 * 2 1 3 12 12 O 1.21296 * 120.00022 * 180.02562 * 11 2 1 13 13 C 1.50705 * 120.00173 * 359.97438 * 11 2 1 14 14 C 1.52996 * 109.47283 * 180.02562 * 13 11 2 15 15 H 1.09004 * 109.87402 * 53.99252 * 14 13 11 16 16 C 1.54099 * 109.87934 * 175.00122 * 14 13 11 17 17 C 1.54808 * 104.18794 * 121.45391 * 16 14 13 18 18 C 1.53001 * 110.90624 * 139.08029 * 17 16 14 19 19 C 1.53001 * 110.90555 * 262.64758 * 17 16 14 20 20 C 1.54995 * 102.09313 * 20.88212 * 17 16 14 21 21 O 1.43742 * 109.87881 * 292.83402 * 14 13 11 22 22 H 1.09000 * 109.47160 * 92.82994 * 1 2 3 23 23 H 1.08999 * 109.46710 * 212.82923 * 1 2 3 24 24 H 1.09002 * 109.47165 * 332.82868 * 1 2 3 25 25 H 0.97001 * 120.00096 * 179.97438 * 6 5 3 26 26 H 1.09004 * 109.46967 * 300.00149 * 13 11 2 27 27 H 1.09000 * 109.46797 * 60.00305 * 13 11 2 28 28 H 1.09003 * 110.48404 * 240.13196 * 16 14 13 29 29 H 1.09003 * 110.48853 * 2.64663 * 16 14 13 30 30 H 1.08995 * 109.47265 * 60.00044 * 18 17 16 31 31 H 1.09008 * 109.47043 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.47256 * 299.99347 * 18 17 16 33 33 H 1.08997 * 109.47144 * 60.00007 * 19 17 16 34 34 H 1.08999 * 109.46812 * 180.02562 * 19 17 16 35 35 H 1.08993 * 109.47204 * 299.99727 * 19 17 16 36 36 H 1.08990 * 110.62079 * 81.47687 * 20 17 16 37 37 H 1.09002 * 110.61824 * 204.47437 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1603 1.2278 0.3810 5 6 1.5482 2.3373 -0.4954 6 7 0.4184 2.2526 -1.1613 7 14 2.3442 4.0037 -0.2149 8 1 3.6003 3.8285 0.5579 9 1 2.6519 4.6322 -1.5247 10 1 1.4132 4.8754 0.5458 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 1 3.0785 -3.5252 0.8287 16 6 1.6229 -4.9716 0.1258 17 6 2.0320 -5.7606 -1.1418 18 6 2.2831 -7.2331 -0.8110 19 6 0.9721 -5.6226 -2.2366 20 6 3.3486 -5.0538 -1.5533 21 8 3.0960 -3.6658 -1.2464 22 1 -0.3633 -0.0507 -1.0264 23 1 -0.3633 -0.8635 0.5571 24 1 -0.3633 0.9143 0.4693 25 1 -0.0023 3.0555 -1.5069 26 1 0.7591 -2.5302 0.8897 27 1 0.7585 -2.5298 -0.8903 28 1 1.9359 -5.5038 1.0240 29 1 0.5464 -4.8006 0.1403 30 1 1.3739 -7.6739 -0.4023 31 1 2.5695 -7.7656 -1.7181 32 1 3.0854 -7.3090 -0.0771 33 1 0.8568 -4.5713 -2.5002 34 1 1.2829 -6.1862 -3.1162 35 1 0.0214 -6.0124 -1.8730 36 1 4.1861 -5.4304 -0.9663 37 1 3.5368 -5.1831 -2.6192 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717058491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:34 Heat of formation + Delta-G solvation = -107.404981 kcal Electronic energy + Delta-G solvation = -18077.458898 eV Core-core repulsion = 15239.861549 eV Total energy + Delta-G solvation = -2837.597350 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10967 -39.91110 -36.64249 -35.32691 -33.80048 -32.89767 -28.90140 -28.17631 -27.78078 -26.82905 -25.91961 -22.57762 -20.69694 -20.20104 -18.86424 -17.87089 -17.10305 -16.66581 -16.40431 -16.18909 -15.73860 -15.58549 -14.97550 -14.31153 -14.24392 -13.88271 -13.66904 -13.39121 -13.28254 -13.09759 -12.82049 -12.77159 -12.65257 -12.39121 -12.30107 -12.18184 -12.08955 -11.64202 -11.51955 -11.40683 -10.99963 -10.44607 -10.26497 -9.63463 -8.32131 -5.97642 1.35711 1.39291 1.53929 2.08976 2.29030 3.00005 3.12175 3.14495 3.53260 3.79814 3.94570 4.06285 4.10896 4.26634 4.42734 4.53780 4.55931 4.67036 4.73109 4.78985 4.86372 4.88625 4.95571 5.02670 5.07253 5.09980 5.18175 5.29561 5.36673 5.38806 5.44985 5.50102 6.10650 6.19143 6.52825 7.20551 7.51304 8.09695 8.71107 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.050263 B = 0.005381 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.938316 B = 5201.939170 C = 5393.049127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.472 5.472 3 C -0.343 4.343 4 H 0.066 0.934 5 C -0.005 4.005 6 N -0.901 5.901 7 Si 0.990 3.010 8 H -0.275 1.275 9 H -0.276 1.276 10 H -0.262 1.262 11 C 0.438 3.562 12 O -0.627 6.627 13 C -0.118 4.118 14 C 0.095 3.905 15 H 0.046 0.954 16 C -0.134 4.134 17 C -0.094 4.094 18 C -0.130 4.130 19 C -0.134 4.134 20 C 0.040 3.960 21 O -0.395 6.395 22 H 0.039 0.961 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.272 0.728 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 -16.528 1.344 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.192 5.192 3 C -0.471 4.471 4 H 0.084 0.916 5 C -0.206 4.206 6 N -0.540 5.540 7 Si 0.813 3.187 8 H -0.200 1.200 9 H -0.202 1.202 10 H -0.187 1.187 11 C 0.228 3.772 12 O -0.514 6.514 13 C -0.158 4.158 14 C 0.037 3.963 15 H 0.064 0.936 16 C -0.172 4.172 17 C -0.094 4.094 18 C -0.187 4.187 19 C -0.191 4.191 20 C -0.036 4.036 21 O -0.315 6.315 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.139 0.861 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.567 -16.193 1.135 16.620 hybrid contribution 0.495 1.175 -0.029 1.275 sum -3.072 -15.018 1.106 15.369 Atomic orbital electron populations 1.21409 0.79359 1.00678 1.00473 1.43913 1.06782 1.04700 1.63793 1.19630 1.00056 0.86431 1.41012 0.91589 1.26097 0.97131 1.02945 0.94437 1.70074 1.19007 1.30532 1.34368 0.84935 0.78298 0.77249 0.78172 1.20000 1.20185 1.18692 1.21163 0.88092 0.86520 0.81448 1.90482 1.16350 1.88052 1.56511 1.21800 0.98358 0.90703 1.04907 1.22433 0.92253 0.94785 0.86805 0.93551 1.23152 1.01867 0.93153 0.99006 1.22118 0.95075 0.96865 0.95355 1.21718 1.02543 0.92282 1.02139 1.21762 0.98316 1.01282 0.97762 1.23882 0.97143 0.81190 1.01418 1.89053 1.76595 1.26033 1.39798 0.94242 0.91166 0.92548 0.91793 0.86136 0.88836 0.88811 0.88608 0.90827 0.91478 0.92223 0.94303 0.91540 0.90682 0.92161 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.65 8.45 127.77 1.08 6.73 16 2 N -0.47 -25.86 3.01 -658.88 -1.99 -27.84 16 3 C -0.34 -20.68 9.25 84.04 0.78 -19.90 16 4 H 0.07 4.27 7.44 -2.91 -0.02 4.25 16 5 C -0.01 -0.28 5.08 84.93 0.43 0.15 16 6 N -0.90 -49.78 10.74 21.66 0.23 -49.55 16 7 Si 0.99 44.40 29.57 68.60 2.03 46.43 16 8 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 9 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 C 0.44 23.01 7.53 87.66 0.66 23.67 16 12 O -0.63 -38.57 15.22 7.72 0.12 -38.45 16 13 C -0.12 -4.40 3.78 29.85 0.11 -4.29 16 14 C 0.10 3.31 2.93 30.96 0.09 3.40 16 15 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 16 C -0.13 -3.04 5.80 31.58 0.18 -2.85 16 17 C -0.09 -1.95 0.99 -50.88 -0.05 -2.00 16 18 C -0.13 -1.88 8.55 71.98 0.62 -1.27 16 19 C -0.13 -2.66 8.53 71.98 0.61 -2.05 16 20 C 0.04 1.11 6.63 72.66 0.48 1.59 16 21 O -0.40 -15.80 10.57 -138.18 -1.46 -17.26 16 22 H 0.04 1.86 7.77 -2.39 -0.02 1.84 16 23 H 0.07 2.48 6.56 -2.39 -0.02 2.47 16 24 H 0.06 2.72 6.84 -2.39 -0.02 2.70 16 25 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 26 H 0.12 3.60 7.40 -2.39 -0.02 3.58 16 27 H 0.09 3.33 8.11 -2.39 -0.02 3.31 16 28 H 0.09 1.76 7.86 -2.39 -0.02 1.74 16 29 H 0.10 1.85 7.43 -2.39 -0.02 1.83 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.56 8.01 -2.39 -0.02 1.54 16 37 H 0.09 2.34 8.06 -2.39 -0.02 2.32 16 Total: -1.00 -75.51 298.47 4.96 -70.55 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.03 Total: 12.96 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.00 Total: 3.17 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.75 Total: -77.39 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -1.34 Total: -55.71 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -75.51 4.96 -70.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717058491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.860 kcal (2) G-P(sol) polarization free energy of solvation -75.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds