Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 110.43480 * 2 1 4 4 C 1.54102 * 110.48818 * 122.54397 * 2 1 3 5 5 O 1.43750 * 107.29390 * 120.70738 * 4 2 1 6 6 C 1.44378 * 106.97531 * 333.49060 * 5 4 2 7 7 H 1.09005 * 110.61070 * 281.40132 * 6 5 4 8 8 C 1.52997 * 110.61878 * 158.56233 * 6 5 4 9 9 C 1.53000 * 109.47060 * 68.57802 * 8 6 5 10 10 N 1.46499 * 109.46840 * 180.02562 * 9 8 6 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 8 12 12 O 1.21684 * 119.99938 * 359.97438 * 11 10 9 13 13 C 1.46375 * 119.99969 * 180.02562 * 11 10 9 14 14 H 1.08003 * 120.00289 * 359.97438 * 13 11 10 15 15 C 1.40045 * 120.00118 * 179.97438 * 13 11 10 16 16 N 1.30673 * 119.99924 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00047 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46828 * 90.00231 * 17 15 13 19 19 H 1.48501 * 109.47414 * 209.99810 * 17 15 13 20 20 H 1.48499 * 109.47437 * 330.00056 * 17 15 13 21 21 C 1.54987 * 110.34532 * 237.30570 * 2 1 3 22 22 H 1.08995 * 109.47208 * 298.90435 * 1 2 3 23 23 H 1.08998 * 109.47446 * 58.91291 * 1 2 3 24 24 H 1.09004 * 109.46819 * 178.90886 * 1 2 3 25 25 H 1.08998 * 109.47145 * 181.09082 * 3 2 1 26 26 H 1.08999 * 109.47282 * 301.08978 * 3 2 1 27 27 H 1.08999 * 109.47161 * 61.08992 * 3 2 1 28 28 H 1.08998 * 109.88232 * 1.28438 * 4 2 1 29 29 H 1.09002 * 110.00313 * 240.19763 * 4 2 1 30 30 H 1.09002 * 109.47153 * 308.57483 * 8 6 5 31 31 H 1.09001 * 109.46832 * 188.57674 * 8 6 5 32 32 H 1.09001 * 109.47194 * 299.99650 * 9 8 6 33 33 H 1.08992 * 109.47399 * 59.99823 * 9 8 6 34 34 H 0.97005 * 120.00448 * 359.97438 * 10 9 8 35 35 H 0.96996 * 119.99816 * 180.02562 * 16 15 13 36 36 H 1.09003 * 110.84377 * 143.89954 * 21 2 1 37 37 H 1.09000 * 111.04829 * 20.24000 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0641 1.4337 0.0000 4 6 2.0693 -0.7766 1.2169 5 8 2.8754 -1.8547 0.7127 6 6 2.3782 -2.1723 -0.6050 7 1 1.4714 -2.7737 -0.5383 8 6 3.4466 -2.9004 -1.4230 9 6 3.6807 -4.2923 -0.8323 10 7 4.7042 -4.9891 -1.6153 11 6 5.0764 -6.2394 -1.2766 12 8 4.5628 -6.7892 -0.3203 13 6 6.0995 -6.9355 -2.0586 14 1 6.5557 -6.4475 -2.9071 15 6 6.4867 -8.2345 -1.7064 16 7 5.9351 -8.8249 -0.6794 17 14 7.7918 -9.1231 -2.7047 18 1 9.1324 -8.8356 -2.1342 19 1 7.5384 -10.5857 -2.6605 20 1 7.7422 -8.6545 -4.1130 21 6 2.0688 -0.7849 -1.2229 22 1 -0.3633 0.4967 0.8996 23 1 -0.3634 0.5306 -0.8800 24 1 -0.3633 -1.0275 -0.0196 25 1 3.1538 1.4155 -0.0196 26 1 1.6937 1.9595 -0.8800 27 1 1.7254 1.9477 0.8996 28 1 1.2391 -1.1757 1.7996 29 1 2.6767 -0.1194 1.8392 30 1 4.3764 -2.3322 -1.3939 31 1 3.1112 -2.9957 -2.4558 32 1 4.0161 -4.1970 0.2004 33 1 2.7510 -4.8604 -0.8614 34 1 5.1140 -4.5508 -2.3774 35 1 6.2036 -9.7244 -0.4353 36 1 2.9754 -0.3217 -1.6124 37 1 1.3100 -0.8663 -2.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717360957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -108.637393 kcal Electronic energy + Delta-G solvation = -17245.175868 eV Core-core repulsion = 14407.525077 eV Total energy + Delta-G solvation = -2837.650791 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99458 -37.22438 -34.92148 -33.91245 -32.37894 -31.24083 -28.07739 -27.62371 -26.19996 -25.74050 -22.80691 -20.92038 -19.54690 -19.43290 -17.11004 -16.38620 -15.67277 -15.27883 -15.03230 -14.45965 -14.09056 -13.90034 -13.79415 -13.67075 -13.30229 -12.83507 -12.31772 -12.09271 -11.99482 -11.80836 -11.46867 -11.21690 -11.09069 -11.06468 -10.86560 -10.77463 -10.54379 -10.42246 -10.29775 -10.13505 -9.54808 -8.79017 -7.52771 -7.38678 -6.11604 -4.57032 3.18326 3.24566 3.28223 3.88523 4.14937 4.25015 4.48383 4.65785 4.66693 4.77761 5.05537 5.11389 5.15661 5.32949 5.43062 5.45709 5.49163 5.56079 5.61885 5.67791 5.73464 5.79516 5.87062 5.89907 5.95211 6.00972 6.09470 6.16502 6.66655 6.79593 7.00749 7.49549 8.01982 8.20086 8.40675 9.08995 9.63635 10.67974 10.87331 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.065828 B = 0.003857 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.249939 B = 7258.638380 C = 7420.013834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.054 3.946 5 O -0.366 6.366 6 C 0.082 3.918 7 H 0.070 0.930 8 C -0.122 4.122 9 C 0.135 3.865 10 N -0.769 5.769 11 C 0.554 3.446 12 O -0.581 6.581 13 C -0.547 4.547 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.769 5.769 17 Si 0.908 3.092 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.141 4.141 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.379 0.621 35 H 0.267 0.733 36 H 0.079 0.921 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 18.398 -1.568 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.193 4.193 4 C -0.024 4.024 5 O -0.285 6.285 6 C 0.024 3.976 7 H 0.088 0.912 8 C -0.160 4.160 9 C 0.010 3.990 10 N -0.425 5.425 11 C 0.357 3.643 12 O -0.464 6.464 13 C -0.584 4.584 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.398 5.398 17 Si 0.733 3.267 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.179 4.179 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.210 0.790 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.630 17.711 -0.610 19.711 hybrid contribution 0.600 -0.059 -0.914 1.094 sum -8.030 17.652 -1.523 19.453 Atomic orbital electron populations 1.21874 0.93622 1.02149 1.01928 1.21990 0.96295 0.96404 0.95637 1.21831 1.01180 0.94486 1.01803 1.23286 0.94977 0.88800 0.95301 1.88976 1.56024 1.52212 1.31320 1.23090 0.96845 0.94806 0.82875 0.91166 1.21831 0.98709 0.96797 0.98627 1.20812 0.92564 0.89740 0.95865 1.46133 1.44006 1.18066 1.34293 1.18219 0.82798 0.78674 0.84574 1.90595 1.58565 1.66318 1.30926 1.20897 1.22588 0.99949 1.14942 0.91484 1.25716 0.95940 0.97244 0.94369 1.70031 1.35565 1.12234 1.21972 0.86378 0.81127 0.78585 0.80651 1.19778 1.20507 1.18958 1.23337 1.01775 0.95527 0.97244 0.92400 0.92319 0.92270 0.92167 0.92434 0.92493 0.92500 0.90072 0.90891 0.90479 0.92767 0.93734 0.79036 0.92183 0.90259 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.25 37.15 0.31 -0.78 16 2 C -0.10 -0.95 0.99 -152.89 -0.15 -1.10 16 3 C -0.14 -1.05 8.28 37.16 0.31 -0.75 16 4 C 0.05 0.60 7.04 37.73 0.27 0.87 16 5 O -0.37 -5.59 10.98 -35.23 -0.39 -5.98 16 6 C 0.08 1.09 3.30 -25.68 -0.08 1.00 16 7 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.12 -1.81 5.09 -26.73 -0.14 -1.95 16 9 C 0.14 2.79 5.61 -4.04 -0.02 2.77 16 10 N -0.77 -18.16 5.55 -61.72 -0.34 -18.50 16 11 C 0.55 16.53 7.75 -12.99 -0.10 16.43 16 12 O -0.58 -19.76 15.02 5.20 0.08 -19.68 16 13 C -0.55 -15.97 9.54 -35.63 -0.34 -16.31 16 14 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 15 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 16 N -0.77 -23.79 11.83 55.55 0.66 -23.13 16 17 Si 0.91 20.60 29.56 -169.99 -5.02 15.58 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 C -0.14 -1.43 5.71 -24.63 -0.14 -1.57 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.61 7.69 -51.93 -0.40 0.21 16 29 H 0.08 0.83 7.70 -51.93 -0.40 0.43 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 1.25 7.99 -51.93 -0.41 0.84 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.38 7.72 8.45 -40.82 -0.35 7.38 16 35 H 0.27 7.48 8.29 -40.82 -0.34 7.14 16 36 H 0.08 0.79 7.79 -51.93 -0.40 0.39 16 37 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -35.78 306.35 -6.74 -42.52 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.15 Total: 3.55 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.19 Total: 1.02 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.31 Total: -41.63 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.31 Total: -25.66 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.78 -6.74 -42.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717360957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.118 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds