Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 110.43480 * 2 1 4 4 C 1.54102 * 110.48818 * 122.54397 * 2 1 3 5 5 O 1.43750 * 107.29390 * 120.70738 * 4 2 1 6 6 C 1.44378 * 106.97531 * 333.49060 * 5 4 2 7 7 H 1.09005 * 110.61070 * 281.40132 * 6 5 4 8 8 C 1.52997 * 110.61878 * 158.56233 * 6 5 4 9 9 C 1.53000 * 109.47060 * 68.57802 * 8 6 5 10 10 N 1.46499 * 109.46840 * 180.02562 * 9 8 6 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 8 12 12 O 1.21684 * 119.99938 * 359.97438 * 11 10 9 13 13 C 1.46375 * 119.99969 * 180.02562 * 11 10 9 14 14 H 1.08003 * 120.00289 * 359.97438 * 13 11 10 15 15 C 1.40045 * 120.00118 * 179.97438 * 13 11 10 16 16 N 1.30673 * 119.99924 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00047 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46828 * 90.00231 * 17 15 13 19 19 H 1.48501 * 109.47414 * 209.99810 * 17 15 13 20 20 H 1.48499 * 109.47437 * 330.00056 * 17 15 13 21 21 C 1.54987 * 110.34532 * 237.30570 * 2 1 3 22 22 H 1.08995 * 109.47208 * 298.90435 * 1 2 3 23 23 H 1.08998 * 109.47446 * 58.91291 * 1 2 3 24 24 H 1.09004 * 109.46819 * 178.90886 * 1 2 3 25 25 H 1.08998 * 109.47145 * 181.09082 * 3 2 1 26 26 H 1.08999 * 109.47282 * 301.08978 * 3 2 1 27 27 H 1.08999 * 109.47161 * 61.08992 * 3 2 1 28 28 H 1.08998 * 109.88232 * 1.28438 * 4 2 1 29 29 H 1.09002 * 110.00313 * 240.19763 * 4 2 1 30 30 H 1.09002 * 109.47153 * 308.57483 * 8 6 5 31 31 H 1.09001 * 109.46832 * 188.57674 * 8 6 5 32 32 H 1.09001 * 109.47194 * 299.99650 * 9 8 6 33 33 H 1.08992 * 109.47399 * 59.99823 * 9 8 6 34 34 H 0.97005 * 120.00448 * 359.97438 * 10 9 8 35 35 H 0.96996 * 119.99816 * 180.02562 * 16 15 13 36 36 H 1.09003 * 110.84377 * 143.89954 * 21 2 1 37 37 H 1.09000 * 111.04829 * 20.24000 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0641 1.4337 0.0000 4 6 2.0693 -0.7766 1.2169 5 8 2.8754 -1.8547 0.7127 6 6 2.3782 -2.1723 -0.6050 7 1 1.4714 -2.7737 -0.5383 8 6 3.4466 -2.9004 -1.4230 9 6 3.6807 -4.2923 -0.8323 10 7 4.7042 -4.9891 -1.6153 11 6 5.0764 -6.2394 -1.2766 12 8 4.5628 -6.7892 -0.3203 13 6 6.0995 -6.9355 -2.0586 14 1 6.5557 -6.4475 -2.9071 15 6 6.4867 -8.2345 -1.7064 16 7 5.9351 -8.8249 -0.6794 17 14 7.7918 -9.1231 -2.7047 18 1 9.1324 -8.8356 -2.1342 19 1 7.5384 -10.5857 -2.6605 20 1 7.7422 -8.6545 -4.1130 21 6 2.0688 -0.7849 -1.2229 22 1 -0.3633 0.4967 0.8996 23 1 -0.3634 0.5306 -0.8800 24 1 -0.3633 -1.0275 -0.0196 25 1 3.1538 1.4155 -0.0196 26 1 1.6937 1.9595 -0.8800 27 1 1.7254 1.9477 0.8996 28 1 1.2391 -1.1757 1.7996 29 1 2.6767 -0.1194 1.8392 30 1 4.3764 -2.3322 -1.3939 31 1 3.1112 -2.9957 -2.4558 32 1 4.0161 -4.1970 0.2004 33 1 2.7510 -4.8604 -0.8614 34 1 5.1140 -4.5508 -2.3774 35 1 6.2036 -9.7244 -0.4353 36 1 2.9754 -0.3217 -1.6124 37 1 1.3100 -0.8663 -2.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717360957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -135.175400 kcal Electronic energy + Delta-G solvation = -17246.326642 eV Core-core repulsion = 14407.525077 eV Total energy + Delta-G solvation = -2838.801565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93914 -39.37942 -36.19043 -35.33315 -34.55580 -32.82968 -29.56080 -28.23108 -27.92192 -26.78768 -24.29414 -22.12126 -21.64295 -20.26982 -19.16675 -17.51964 -17.37346 -16.71060 -16.20780 -16.03509 -15.81065 -15.49627 -14.76331 -14.48805 -14.28906 -14.28670 -13.82416 -13.74416 -13.11037 -12.88235 -12.78052 -12.67837 -12.62986 -12.40581 -12.21135 -12.16275 -12.00397 -11.59768 -11.54109 -11.37473 -10.93411 -10.56857 -9.88509 -9.49899 -8.29249 -6.86683 1.40574 1.42943 1.58481 2.25456 2.46709 2.93752 3.06241 3.50799 3.61138 3.73897 3.88535 3.99116 4.13556 4.25555 4.32665 4.39913 4.54708 4.67570 4.73684 4.76497 4.80996 4.83770 4.97869 5.03058 5.07520 5.13752 5.19900 5.22948 5.31464 5.31551 5.44157 5.86995 6.02136 6.23898 6.26347 6.85776 7.55936 8.48842 8.67328 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.065828 B = 0.003857 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.249939 B = 7258.638380 C = 7420.013834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 C -0.133 4.133 4 C 0.044 3.956 5 O -0.404 6.404 6 C 0.076 3.924 7 H 0.066 0.934 8 C -0.106 4.106 9 C 0.139 3.861 10 N -0.756 5.756 11 C 0.532 3.468 12 O -0.637 6.637 13 C -0.574 4.574 14 H 0.091 0.909 15 C 0.024 3.976 16 N -0.824 5.824 17 Si 1.004 2.996 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.246 1.246 21 C -0.132 4.132 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.021 0.979 33 H 0.028 0.972 34 H 0.397 0.603 35 H 0.275 0.725 36 H 0.084 0.916 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 19.895 -3.730 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 C -0.190 4.190 4 C -0.033 4.033 5 O -0.324 6.324 6 C 0.018 3.982 7 H 0.084 0.916 8 C -0.143 4.143 9 C 0.014 3.986 10 N -0.410 5.410 11 C 0.336 3.664 12 O -0.524 6.524 13 C -0.610 4.610 14 H 0.109 0.891 15 C -0.190 4.190 16 N -0.454 5.454 17 Si 0.822 3.178 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.169 1.169 21 C -0.170 4.170 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.172 19.282 -2.805 21.129 hybrid contribution 0.410 -0.489 -0.171 0.660 sum -7.762 18.793 -2.975 20.550 Atomic orbital electron populations 1.21871 0.92433 1.01995 1.03098 1.21983 0.97195 0.96789 0.93850 1.21814 1.00714 0.93514 1.02969 1.23518 0.94878 0.88358 0.96509 1.88940 1.57296 1.53729 1.32410 1.23153 0.95799 0.96636 0.82573 0.91581 1.21738 0.99883 0.92878 0.99850 1.20857 0.90634 0.92710 0.94391 1.45819 1.43980 1.16612 1.34630 1.18735 0.83070 0.80322 0.84225 1.90545 1.60475 1.68203 1.33207 1.21462 1.22827 1.01008 1.15721 0.89111 1.27079 0.98547 0.97965 0.95436 1.70211 1.37762 1.13089 1.24335 0.84941 0.76932 0.76803 0.79077 1.18612 1.19766 1.16933 1.23309 1.02666 0.93142 0.97865 0.91551 0.90863 0.93114 0.92875 0.91083 0.91548 0.92424 0.89444 0.90335 0.87858 0.96076 0.95354 0.76910 0.91554 0.89774 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.25 71.98 0.59 -1.23 16 2 C -0.10 -1.60 0.99 -51.13 -0.05 -1.65 16 3 C -0.13 -1.72 8.28 71.98 0.60 -1.13 16 4 C 0.04 0.97 7.04 72.36 0.51 1.48 16 5 O -0.40 -12.50 10.98 -148.98 -1.64 -14.13 16 6 C 0.08 1.98 3.30 31.28 0.10 2.08 16 7 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 8 C -0.11 -3.07 5.09 30.59 0.16 -2.91 16 9 C 0.14 5.92 5.61 86.38 0.48 6.41 16 10 N -0.76 -36.19 5.55 -467.42 -2.59 -38.79 16 11 C 0.53 32.70 7.75 86.36 0.67 33.37 16 12 O -0.64 -45.38 15.02 -4.30 -0.06 -45.45 16 13 C -0.57 -33.65 9.54 24.83 0.24 -33.42 16 14 H 0.09 4.71 7.85 -2.91 -0.02 4.69 16 15 C 0.02 1.40 5.50 85.30 0.47 1.87 16 16 N -0.82 -52.27 11.83 21.83 0.26 -52.01 16 17 Si 1.00 41.79 29.56 68.60 2.03 43.82 16 18 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 21 C -0.13 -2.38 5.71 31.96 0.18 -2.19 16 22 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.23 7.69 -2.39 -0.02 1.21 16 29 H 0.09 1.76 7.70 -2.39 -0.02 1.74 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.02 1.03 7.99 -2.39 -0.02 1.01 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.40 15.91 8.45 -92.70 -0.78 15.13 16 35 H 0.27 15.69 8.29 -92.71 -0.77 14.92 16 36 H 0.08 1.45 7.79 -2.39 -0.02 1.43 16 37 H 0.10 1.42 7.86 -2.39 -0.02 1.40 16 Total: -1.00 -81.07 306.35 2.20 -78.88 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.26 Total: 25.00 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 3.95 Total: 2.68 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -2.34 Total: -90.80 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -1.70 Total: -59.58 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -81.07 2.20 -78.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717360957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.300 kcal (2) G-P(sol) polarization free energy of solvation -81.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds