Wall clock time and date at job start Mon Mar 30 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 110.53673 * 2 1 4 4 C 1.54100 * 110.48727 * 122.61611 * 2 1 3 5 5 O 1.43735 * 107.29413 * 116.64784 * 4 2 1 6 6 C 1.44388 * 106.97697 * 26.51079 * 5 4 2 7 7 H 1.08997 * 110.61139 * 78.44264 * 6 5 4 8 8 C 1.52995 * 110.61939 * 201.27936 * 6 5 4 9 9 C 1.52998 * 109.47389 * 293.54857 * 8 6 5 10 10 N 1.46503 * 109.47118 * 180.02562 * 9 8 6 11 11 C 1.34773 * 119.99598 * 179.97438 * 10 9 8 12 12 O 1.21691 * 120.00614 * 0.02562 * 11 10 9 13 13 C 1.46377 * 119.99831 * 179.97438 * 11 10 9 14 14 H 1.08002 * 119.99748 * 353.94359 * 13 11 10 15 15 C 1.40053 * 120.00195 * 173.93877 * 13 11 10 16 16 N 1.30669 * 120.00065 * 6.15504 * 15 13 11 17 17 Si 1.86800 * 119.99856 * 186.15255 * 15 13 11 18 18 H 1.48506 * 109.47109 * 94.98696 * 17 15 13 19 19 H 1.48502 * 109.46954 * 214.98365 * 17 15 13 20 20 H 1.48491 * 109.47357 * 334.98500 * 17 15 13 21 21 C 1.54808 * 110.48826 * 237.38436 * 2 1 3 22 22 H 1.08998 * 109.47376 * 298.84032 * 1 2 3 23 23 H 1.09007 * 109.46866 * 58.83621 * 1 2 3 24 24 H 1.09001 * 109.47230 * 178.83411 * 1 2 3 25 25 H 1.09004 * 109.47018 * 181.16118 * 3 2 1 26 26 H 1.08997 * 109.47575 * 301.15933 * 3 2 1 27 27 H 1.08997 * 109.46931 * 61.16601 * 3 2 1 28 28 H 1.08996 * 109.87763 * 236.07839 * 4 2 1 29 29 H 1.09002 * 109.87349 * 357.07540 * 4 2 1 30 30 H 1.09003 * 109.47044 * 53.54887 * 8 6 5 31 31 H 1.09001 * 109.47096 * 173.54800 * 8 6 5 32 32 H 1.09003 * 109.47052 * 300.00024 * 9 8 6 33 33 H 1.09001 * 109.47049 * 59.99913 * 9 8 6 34 34 H 0.96994 * 120.00215 * 0.02562 * 10 9 8 35 35 H 0.97000 * 120.00295 * 180.02562 * 16 15 13 36 36 H 1.09005 * 110.90992 * 338.64111 * 21 2 1 37 37 H 1.09000 * 110.91005 * 102.24684 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4328 0.0000 4 6 2.0694 -0.7781 1.2159 5 8 2.7955 -1.9109 0.7104 6 6 3.2660 -1.5561 -0.6077 7 1 4.1456 -0.9158 -0.5417 8 6 3.5757 -2.8116 -1.4253 9 6 4.7662 -3.5443 -0.8035 10 7 5.0632 -4.7462 -1.5868 11 6 6.0798 -5.5531 -1.2236 12 8 6.7508 -5.2836 -0.2448 13 6 6.3761 -6.7543 -2.0059 14 1 5.7224 -7.0472 -2.8141 15 6 7.5074 -7.5236 -1.7063 16 7 8.2312 -7.2398 -0.6560 17 14 7.9816 -8.9556 -2.8082 18 1 8.9889 -8.5035 -3.8014 19 1 8.5568 -10.0469 -1.9815 20 1 6.7763 -9.4546 -3.5176 21 6 2.0719 -0.7816 -1.2215 22 1 -0.3634 0.4957 0.9002 23 1 -0.3633 0.5318 -0.8794 24 1 -0.3634 -1.0275 -0.0209 25 1 3.1564 1.4126 -0.0208 26 1 1.6963 1.9596 -0.8794 27 1 1.7301 1.9468 0.9002 28 1 2.7349 -0.1409 1.7981 29 1 1.2401 -1.1143 1.8383 30 1 2.7055 -3.4681 -1.4267 31 1 3.8183 -2.5277 -2.4493 32 1 5.6364 -2.8879 -0.8021 33 1 4.5236 -3.8282 0.2205 34 1 4.5286 -4.9609 -2.3672 35 1 9.0150 -7.7724 -0.4487 36 1 1.3197 -1.4693 -1.6081 37 1 2.4104 -0.0992 -2.0011 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717360958.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:27 Heat of formation + Delta-G solvation = -135.121655 kcal Electronic energy + Delta-G solvation = -17250.429364 eV Core-core repulsion = 14411.630129 eV Total energy + Delta-G solvation = -2838.799235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94908 -39.37995 -36.19193 -35.33120 -34.55948 -32.82650 -29.56169 -28.23733 -27.92493 -26.78387 -24.30228 -22.11355 -21.64543 -20.26334 -19.16588 -17.52989 -17.37899 -16.71651 -16.20113 -16.03383 -15.81016 -15.49669 -14.76487 -14.48651 -14.30679 -14.27709 -13.82779 -13.74077 -13.11055 -12.88232 -12.81032 -12.68134 -12.60955 -12.40813 -12.20629 -12.15803 -11.99303 -11.60027 -11.53826 -11.37745 -10.93443 -10.56732 -9.88230 -9.49981 -8.30197 -6.86232 1.40623 1.42507 1.58842 2.25471 2.46487 2.93648 3.06211 3.51013 3.59963 3.73880 3.88739 3.99389 4.13446 4.25738 4.32945 4.39912 4.54704 4.67723 4.73697 4.76601 4.80919 4.83538 4.97924 5.03204 5.07519 5.14191 5.20042 5.22953 5.31435 5.31937 5.44163 5.87197 6.02202 6.23838 6.26508 6.85828 7.55878 8.48577 8.67004 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.066219 B = 0.003862 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.739338 B = 7249.310876 C = 7417.437691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 C -0.136 4.136 4 C 0.044 3.956 5 O -0.404 6.404 6 C 0.076 3.924 7 H 0.067 0.933 8 C -0.106 4.106 9 C 0.139 3.861 10 N -0.755 5.755 11 C 0.533 3.467 12 O -0.637 6.637 13 C -0.574 4.574 14 H 0.091 0.909 15 C 0.025 3.975 16 N -0.824 5.824 17 Si 1.004 2.996 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.246 1.246 21 C -0.132 4.132 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.027 0.973 33 H 0.021 0.979 34 H 0.397 0.603 35 H 0.275 0.725 36 H 0.084 0.916 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.494 14.730 -4.087 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.033 4.033 5 O -0.324 6.324 6 C 0.018 3.982 7 H 0.085 0.915 8 C -0.143 4.143 9 C 0.014 3.986 10 N -0.410 5.410 11 C 0.337 3.663 12 O -0.525 6.525 13 C -0.611 4.611 14 H 0.109 0.891 15 C -0.190 4.190 16 N -0.454 5.454 17 Si 0.823 3.177 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.170 1.170 21 C -0.170 4.170 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.859 14.727 -3.140 21.155 hybrid contribution 0.353 -0.514 -0.211 0.658 sum -14.505 14.213 -3.351 20.583 Atomic orbital electron populations 1.21819 0.92158 1.02080 1.02965 1.21956 0.97579 0.96415 0.93874 1.21866 1.00637 0.93762 1.03100 1.23511 0.95675 0.87577 0.96521 1.88939 1.72512 1.38552 1.32374 1.23159 0.97273 0.95163 0.82556 0.91547 1.21737 0.96968 0.95962 0.99674 1.20847 0.96540 0.86754 0.94428 1.45817 1.36232 1.26234 1.32731 1.18736 0.78933 0.84325 0.84330 1.90546 1.53447 1.76909 1.31574 1.21458 1.12030 1.09129 1.18483 0.89128 1.27078 0.94905 1.01069 0.95929 1.70212 1.13598 1.37166 1.24390 0.84926 0.79464 0.75700 0.77646 1.18622 1.19783 1.16954 1.23280 0.96730 0.99075 0.97912 0.91566 0.91076 0.92885 0.93091 0.90859 0.91547 0.92420 0.89469 0.90316 0.87871 0.95428 0.96009 0.76901 0.91535 0.89785 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.27 71.98 0.60 -1.14 16 2 C -0.10 -1.61 0.99 -51.19 -0.05 -1.66 16 3 C -0.14 -1.81 8.26 71.98 0.59 -1.22 16 4 C 0.04 0.97 7.04 72.35 0.51 1.48 16 5 O -0.40 -12.53 10.89 -148.98 -1.62 -14.15 16 6 C 0.08 1.98 3.32 31.27 0.10 2.08 16 7 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 8 C -0.11 -3.06 5.11 30.59 0.16 -2.91 16 9 C 0.14 5.94 5.59 86.38 0.48 6.42 16 10 N -0.76 -36.19 5.55 -467.40 -2.59 -38.79 16 11 C 0.53 32.73 7.74 86.36 0.67 33.40 16 12 O -0.64 -45.43 15.05 -4.32 -0.06 -45.50 16 13 C -0.57 -33.72 9.53 24.83 0.24 -33.49 16 14 H 0.09 4.72 7.85 -2.91 -0.02 4.69 16 15 C 0.02 1.43 5.49 85.31 0.47 1.90 16 16 N -0.82 -52.22 11.85 21.84 0.26 -51.96 16 17 Si 1.00 41.78 29.56 68.60 2.03 43.81 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 21 C -0.13 -2.38 5.70 31.89 0.18 -2.20 16 22 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 24 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 25 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 1.23 7.69 -2.39 -0.02 1.21 16 29 H 0.09 1.76 7.69 -2.39 -0.02 1.74 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.02 1.06 7.92 -2.39 -0.02 1.04 16 34 H 0.40 15.92 8.45 -92.71 -0.78 15.13 16 35 H 0.27 15.68 8.29 -92.71 -0.77 14.91 16 36 H 0.08 1.45 7.78 -2.38 -0.02 1.43 16 37 H 0.10 1.41 7.86 -2.39 -0.02 1.39 16 Total: -1.00 -81.13 306.23 2.21 -78.92 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.26 Total: 24.98 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 3.95 Total: 2.69 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -2.34 Total: -90.75 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: -1.69 Total: -59.65 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -81.13 2.21 -78.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717360958.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.205 kcal (2) G-P(sol) polarization free energy of solvation -81.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds