Wall clock time and date at job start Mon Mar 30 2020 03:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00202 * 2 1 4 4 C 1.53010 * 109.46938 * 125.00092 * 3 2 1 5 5 O 1.42903 * 113.37944 * 51.92270 * 4 3 2 6 6 C 1.53507 * 114.17169 * 185.00024 * 4 3 2 7 7 N 1.47480 * 87.93050 * 139.67366 * 6 4 3 8 8 C 1.46906 * 111.00036 * 221.29895 * 7 6 4 9 9 C 1.52993 * 109.47378 * 170.00204 * 8 7 6 10 10 O 1.42903 * 109.47204 * 64.99537 * 9 8 7 11 11 C 1.42903 * 113.99770 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.46830 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99830 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99810 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99461 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00029 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47165 * 90.00154 * 16 14 12 18 18 H 1.48507 * 109.47097 * 209.99827 * 16 14 12 19 19 H 1.48496 * 109.47325 * 330.00211 * 16 14 12 20 20 C 1.47477 * 87.83705 * 332.99099 * 7 6 4 21 21 H 1.07996 * 120.00007 * 179.97438 * 1 2 3 22 22 H 1.08002 * 119.99373 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.00065 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.47169 * 5.00607 * 3 2 1 25 25 H 1.08991 * 109.47476 * 245.00289 * 3 2 1 26 26 H 0.96696 * 114.00363 * 313.08086 * 5 4 3 27 27 H 1.08997 * 113.47520 * 24.90835 * 6 4 3 28 28 H 1.08991 * 113.53313 * 254.44988 * 6 4 3 29 29 H 1.09004 * 109.47040 * 289.99992 * 8 7 6 30 30 H 1.09000 * 109.47033 * 49.99944 * 8 7 6 31 31 H 1.08997 * 109.47645 * 185.00377 * 9 8 7 32 32 H 1.09005 * 109.46770 * 304.99958 * 9 8 7 33 33 H 1.08997 * 109.47226 * 299.99656 * 11 10 9 34 34 H 1.08996 * 109.47063 * 60.00397 * 11 10 9 35 35 H 0.97004 * 119.99614 * 180.02562 * 15 14 12 36 36 H 1.09001 * 113.47815 * 141.77739 * 20 7 6 37 37 H 1.09007 * 113.47621 * 272.24503 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.8803 0.1825 1.2483 6 6 3.7744 2.6669 1.3563 7 7 3.5885 2.5182 2.8117 8 6 3.2268 3.8008 3.4300 9 6 2.8012 3.5657 4.8806 10 8 3.9172 3.0848 5.6326 11 6 3.6252 2.8312 7.0082 12 6 4.8667 2.3315 7.7014 13 1 5.7864 2.2185 7.1467 14 6 4.8282 2.0187 9.0436 15 7 5.9114 1.5822 9.6483 16 14 3.2375 2.2148 10.0031 17 1 2.4623 0.9497 9.9403 18 1 3.5499 2.5340 11.4194 19 1 2.4358 3.3164 9.4126 20 6 2.3868 1.7148 2.5197 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5399 0.9354 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1317 0.0897 25 1 2.6213 1.4026 -0.9313 26 1 3.4121 -0.6563 1.1380 27 1 3.2396 3.5181 0.9349 28 1 4.8185 2.6297 1.0458 29 1 4.0868 4.4702 3.4077 30 1 2.4018 4.2506 2.8776 31 1 2.4487 4.5024 5.3123 32 1 1.9991 2.8280 4.9089 33 1 3.2897 3.7525 7.4843 34 1 2.8405 2.0782 7.0803 35 1 5.8842 1.3617 10.5925 36 1 2.2548 0.8696 3.1952 37 1 1.4816 2.3119 2.4088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720834863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:38 Heat of formation + Delta-G solvation = -33.170987 kcal Electronic energy + Delta-G solvation = -17304.439429 eV Core-core repulsion = 14470.061107 eV Total energy + Delta-G solvation = -2834.378322 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65121 -37.04588 -35.90653 -34.43534 -32.64136 -31.10252 -28.59501 -27.41605 -26.10526 -24.51849 -21.78416 -21.22212 -20.08461 -19.94545 -17.01076 -16.77069 -16.32001 -15.87638 -15.32190 -15.21063 -14.60596 -14.26505 -14.00769 -13.88234 -13.19513 -12.90130 -12.75361 -12.37556 -12.33257 -12.11668 -11.71901 -11.53630 -11.31196 -10.87350 -10.76394 -10.48759 -10.37869 -10.02481 -9.81316 -9.51545 -9.10441 -8.78529 -8.64181 -8.38765 -6.05085 -4.03224 1.91805 3.28069 3.34460 3.36230 3.75707 4.09660 4.30319 4.40470 4.41706 4.64876 4.77206 4.86730 5.07337 5.18159 5.25810 5.26839 5.34292 5.49030 5.52225 5.57978 5.68437 5.72851 5.82846 5.88618 5.96638 6.17944 6.25755 6.39388 6.48516 6.65556 7.05894 7.15484 7.58317 7.66694 8.11475 8.75325 9.08917 9.54566 11.08242 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032373 B = 0.004522 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.702908 B = 6190.017244 C = 6305.060853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C -0.110 4.110 4 C 0.110 3.890 5 O -0.523 6.523 6 C 0.006 3.994 7 N -0.438 5.438 8 C 0.022 3.978 9 C 0.065 3.935 10 O -0.365 6.365 11 C 0.168 3.832 12 C -0.515 4.515 13 H 0.083 0.917 14 C 0.071 3.929 15 N -0.896 5.896 16 Si 0.876 3.124 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.026 4.026 21 H 0.099 0.901 22 H 0.096 0.904 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.374 0.626 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.000 1.000 34 H -0.004 1.004 35 H 0.266 0.734 36 H 0.089 0.911 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.570 0.498 -20.369 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C -0.148 4.148 4 C 0.068 3.932 5 O -0.328 6.328 6 C -0.123 4.123 7 N -0.160 5.160 8 C -0.106 4.106 9 C -0.013 4.013 10 O -0.283 6.283 11 C 0.093 3.907 12 C -0.553 4.553 13 H 0.101 0.899 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.703 3.297 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.156 4.156 21 H 0.117 0.883 22 H 0.114 0.886 23 H 0.129 0.871 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.222 0.778 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.300 0.639 -19.701 22.721 hybrid contribution -2.255 0.109 0.319 2.280 sum -13.554 0.748 -19.382 23.663 Atomic orbital electron populations 1.23872 0.95854 1.02015 1.00503 1.22845 0.96176 0.98269 1.00572 1.21285 0.98108 0.96351 0.99056 1.22138 0.90509 0.87848 0.92706 1.86603 1.35817 1.15185 1.95239 1.24018 1.02644 0.94446 0.91189 1.69155 1.25357 1.12501 1.08956 1.22739 1.00364 0.92647 0.94891 1.22225 0.90709 0.97301 0.91046 1.88025 1.32125 1.85617 1.22566 1.20587 0.97511 0.93958 0.78686 1.20915 0.96682 1.43426 0.94244 0.89857 1.24765 0.96377 0.94763 0.97097 1.69883 1.27749 1.44839 1.11059 0.86855 0.84205 0.79048 0.79640 1.19989 1.20805 1.19216 1.24574 0.93718 0.99848 0.97421 0.88304 0.88559 0.87079 0.90324 0.89789 0.77757 0.90542 0.88832 0.89536 0.93546 0.94111 0.94670 0.98230 0.98647 0.92448 0.89223 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 14.32 29.01 0.42 -0.88 16 2 C -0.16 -1.19 8.91 -36.03 -0.32 -1.51 16 3 C -0.11 -0.88 5.38 -27.88 -0.15 -1.03 16 4 C 0.11 1.24 1.59 -90.09 -0.14 1.10 16 5 O -0.52 -6.76 13.54 -35.23 -0.48 -7.24 16 6 C 0.01 0.07 7.14 -7.55 -0.05 0.02 16 7 N -0.44 -7.04 6.36 -244.63 -1.56 -8.60 16 8 C 0.02 0.34 5.21 -3.82 -0.02 0.32 16 9 C 0.07 1.21 6.12 37.15 0.23 1.44 16 10 O -0.36 -9.10 10.27 -35.23 -0.36 -9.46 16 11 C 0.17 4.49 4.76 36.01 0.17 4.67 16 12 C -0.51 -16.01 9.99 -34.44 -0.34 -16.35 16 13 H 0.08 2.85 8.06 -52.49 -0.42 2.43 16 14 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 15 N -0.90 -28.47 13.96 55.43 0.77 -27.70 16 16 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 20 C -0.03 -0.35 6.34 -7.55 -0.05 -0.39 16 21 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 22 H 0.10 0.62 7.84 -52.49 -0.41 0.21 16 23 H 0.11 0.71 6.94 -52.48 -0.36 0.34 16 24 H 0.08 0.56 7.65 -51.93 -0.40 0.16 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.37 3.36 7.23 45.56 0.33 3.69 16 27 H 0.08 0.73 7.73 -51.93 -0.40 0.33 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.05 0.55 7.56 -51.93 -0.39 0.15 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.63 7.55 -51.93 -0.39 0.23 16 33 H 0.00 0.00 7.20 -51.93 -0.37 -0.37 16 34 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 35 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.07 0.77 7.56 -51.93 -0.39 0.38 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -35.36 307.55 -7.34 -42.69 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.32 Total: -1.12 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.36 Total: -10.55 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.78 Total: -36.30 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.84 Total: -16.69 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.36 -7.34 -42.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720834863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.520 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds