Wall clock time and date at job start Mon Mar 30 2020 03:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00202 * 2 1 4 4 C 1.53010 * 109.46938 * 125.00092 * 3 2 1 5 5 O 1.42903 * 113.37944 * 51.92270 * 4 3 2 6 6 C 1.53507 * 114.17169 * 185.00024 * 4 3 2 7 7 N 1.47480 * 87.93050 * 139.67366 * 6 4 3 8 8 C 1.46906 * 111.00036 * 221.29895 * 7 6 4 9 9 C 1.52993 * 109.47378 * 170.00204 * 8 7 6 10 10 O 1.42903 * 109.47204 * 64.99537 * 9 8 7 11 11 C 1.42903 * 113.99770 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.46830 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99830 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99810 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99461 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00029 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47165 * 90.00154 * 16 14 12 18 18 H 1.48507 * 109.47097 * 209.99827 * 16 14 12 19 19 H 1.48496 * 109.47325 * 330.00211 * 16 14 12 20 20 C 1.47477 * 87.83705 * 332.99099 * 7 6 4 21 21 H 1.07996 * 120.00007 * 179.97438 * 1 2 3 22 22 H 1.08002 * 119.99373 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.00065 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.47169 * 5.00607 * 3 2 1 25 25 H 1.08991 * 109.47476 * 245.00289 * 3 2 1 26 26 H 0.96696 * 114.00363 * 313.08086 * 5 4 3 27 27 H 1.08997 * 113.47520 * 24.90835 * 6 4 3 28 28 H 1.08991 * 113.53313 * 254.44988 * 6 4 3 29 29 H 1.09004 * 109.47040 * 289.99992 * 8 7 6 30 30 H 1.09000 * 109.47033 * 49.99944 * 8 7 6 31 31 H 1.08997 * 109.47645 * 185.00377 * 9 8 7 32 32 H 1.09005 * 109.46770 * 304.99958 * 9 8 7 33 33 H 1.08997 * 109.47226 * 299.99656 * 11 10 9 34 34 H 1.08996 * 109.47063 * 60.00397 * 11 10 9 35 35 H 0.97004 * 119.99614 * 180.02562 * 15 14 12 36 36 H 1.09001 * 113.47815 * 141.77739 * 20 7 6 37 37 H 1.09007 * 113.47621 * 272.24503 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 8 3.8803 0.1825 1.2483 6 6 3.7744 2.6669 1.3563 7 7 3.5885 2.5182 2.8117 8 6 3.2268 3.8008 3.4300 9 6 2.8012 3.5657 4.8806 10 8 3.9172 3.0848 5.6326 11 6 3.6252 2.8312 7.0082 12 6 4.8667 2.3315 7.7014 13 1 5.7864 2.2185 7.1467 14 6 4.8282 2.0187 9.0436 15 7 5.9114 1.5822 9.6483 16 14 3.2375 2.2148 10.0031 17 1 2.4623 0.9497 9.9403 18 1 3.5499 2.5340 11.4194 19 1 2.4358 3.3164 9.4126 20 6 2.3868 1.7148 2.5197 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5399 0.9354 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1317 0.0897 25 1 2.6213 1.4026 -0.9313 26 1 3.4121 -0.6563 1.1380 27 1 3.2396 3.5181 0.9349 28 1 4.8185 2.6297 1.0458 29 1 4.0868 4.4702 3.4077 30 1 2.4018 4.2506 2.8776 31 1 2.4487 4.5024 5.3123 32 1 1.9991 2.8280 4.9089 33 1 3.2897 3.7525 7.4843 34 1 2.8405 2.0782 7.0803 35 1 5.8842 1.3617 10.5925 36 1 2.2548 0.8696 3.1952 37 1 1.4816 2.3119 2.4088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720834863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:37 Heat of formation + Delta-G solvation = -63.223023 kcal Electronic energy + Delta-G solvation = -17305.742583 eV Core-core repulsion = 14470.061107 eV Total energy + Delta-G solvation = -2835.681476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.62226 -38.68351 -37.01292 -35.11030 -34.90081 -32.40499 -30.12998 -28.85497 -27.08617 -25.61434 -23.97923 -22.38891 -20.95669 -20.59822 -19.07045 -17.85386 -17.52217 -17.38847 -16.62858 -16.28139 -16.16688 -15.78916 -15.22621 -14.90154 -14.62493 -14.09896 -13.99234 -13.65855 -13.61191 -13.22875 -12.97276 -12.93598 -12.61899 -12.32884 -12.12874 -11.90154 -11.78538 -11.37017 -11.32732 -10.93777 -10.88711 -10.35249 -10.16968 -9.65196 -8.38518 -6.46867 1.30745 1.35052 1.39256 1.45983 2.28296 2.85080 2.93519 3.10705 3.17248 3.49225 3.64537 4.00237 4.10259 4.19632 4.28984 4.36292 4.38861 4.47540 4.49331 4.58956 4.61673 4.73589 4.76874 4.87417 4.93797 4.99783 5.02027 5.14526 5.41811 5.43452 5.74702 5.86731 5.92279 6.14836 6.57456 6.78128 6.82448 7.17858 8.79279 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032373 B = 0.004522 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.702908 B = 6190.017244 C = 6305.060853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.174 4.174 3 C -0.098 4.098 4 C 0.117 3.883 5 O -0.552 6.552 6 C 0.007 3.993 7 N -0.492 5.492 8 C 0.027 3.973 9 C 0.055 3.945 10 O -0.398 6.398 11 C 0.180 3.820 12 C -0.548 4.548 13 H 0.024 0.976 14 C 0.012 3.988 15 N -0.943 5.943 16 Si 0.960 3.040 17 H -0.259 1.259 18 H -0.270 1.270 19 H -0.245 1.245 20 C -0.025 4.025 21 H 0.105 0.895 22 H 0.104 0.896 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.388 0.612 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.006 0.994 35 H 0.274 0.726 36 H 0.063 0.937 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.901 1.372 -21.071 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.192 4.192 3 C -0.136 4.136 4 C 0.075 3.925 5 O -0.360 6.360 6 C -0.121 4.121 7 N -0.215 5.215 8 C -0.101 4.101 9 C -0.022 4.022 10 O -0.318 6.318 11 C 0.104 3.896 12 C -0.586 4.586 13 H 0.043 0.957 14 C -0.186 4.186 15 N -0.583 5.583 16 Si 0.781 3.219 17 H -0.184 1.184 18 H -0.195 1.195 19 H -0.168 1.168 20 C -0.154 4.154 21 H 0.123 0.877 22 H 0.122 0.878 23 H 0.133 0.867 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.238 0.762 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.023 0.977 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.634 1.511 -20.439 25.183 hybrid contribution -1.118 -0.194 0.466 1.227 sum -15.752 1.317 -19.974 25.472 Atomic orbital electron populations 1.24042 0.95766 1.02781 0.99417 1.22914 0.96486 0.98328 1.01497 1.21193 0.97554 0.97262 0.97582 1.22164 0.90345 0.86823 0.93140 1.86554 1.37468 1.16569 1.95398 1.24112 1.02422 0.96411 0.89188 1.69094 1.27464 1.13464 1.11500 1.22729 1.01469 0.92645 0.93233 1.22631 0.89247 0.98072 0.92290 1.87977 1.35593 1.86295 1.21931 1.20285 0.95163 0.94328 0.79778 1.21180 0.96678 1.45425 0.95275 0.95714 1.25897 1.01294 0.93421 0.97975 1.70046 1.30886 1.45368 1.11968 0.85549 0.78281 0.80270 0.77836 1.18396 1.19477 1.16829 1.24615 0.93986 0.99055 0.97755 0.87662 0.87784 0.86665 0.88732 0.89060 0.76183 0.87119 0.90536 0.90701 0.89105 0.92151 0.93838 0.96932 0.97656 0.91727 0.91856 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.17 -2.20 8.91 25.65 0.23 -1.97 16 3 C -0.10 -1.31 5.38 29.85 0.16 -1.15 16 4 C 0.12 2.48 1.59 -10.45 -0.02 2.46 16 5 O -0.55 -14.26 13.54 -148.98 -2.02 -16.28 16 6 C 0.01 0.16 7.14 83.57 0.60 0.76 16 7 N -0.49 -15.51 6.36 -928.26 -5.91 -21.42 16 8 C 0.03 0.79 5.21 86.30 0.45 1.24 16 9 C 0.05 1.94 6.12 71.98 0.44 2.38 16 10 O -0.40 -20.14 10.27 -148.98 -1.53 -21.67 16 11 C 0.18 9.62 4.76 71.24 0.34 9.96 16 12 C -0.55 -35.35 9.99 25.60 0.26 -35.09 16 13 H 0.02 1.81 8.06 -2.91 -0.02 1.78 16 14 C 0.01 0.73 5.47 84.66 0.46 1.19 16 15 N -0.94 -61.46 13.96 21.45 0.30 -61.16 16 16 Si 0.96 44.73 27.47 68.60 1.88 46.61 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 20 C -0.03 -0.62 6.34 83.57 0.53 -0.09 16 21 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 22 H 0.10 1.01 7.84 -2.91 -0.02 0.98 16 23 H 0.12 1.30 6.94 -2.91 -0.02 1.28 16 24 H 0.09 0.97 7.65 -2.38 -0.02 0.96 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.39 6.95 7.23 -74.06 -0.54 6.41 16 27 H 0.11 1.74 7.73 -2.39 -0.02 1.72 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.09 1.77 7.56 -2.39 -0.02 1.75 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 1.46 7.55 -2.38 -0.02 1.44 16 33 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 34 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 35 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.10 1.82 7.56 -2.38 -0.02 1.80 16 Total: -1.00 -80.15 307.55 -2.41 -82.56 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.45 Total: 12.77 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 4.42 Total: -21.42 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -5.61 Total: -82.58 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -3.55 Total: -37.94 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -80.15 -2.41 -82.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720834863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.339 kcal (2) G-P(sol) polarization free energy of solvation -80.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds