Wall clock time and date at job start Mon Mar 30 2020 03:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 110.89040 * 2 1 4 4 C 1.54635 * 110.96935 * 123.81178 * 2 1 3 5 5 C 1.51276 * 104.19594 * 93.32005 * 4 2 1 6 6 O 1.21277 * 124.94051 * 196.27433 * 5 4 2 7 7 N 1.34426 * 110.11710 * 16.25521 * 5 4 2 8 8 C 1.46499 * 124.34837 * 180.40612 * 7 5 4 9 9 C 1.53000 * 109.46840 * 90.02687 * 8 7 5 10 10 O 1.42899 * 109.47405 * 64.99638 * 9 8 7 11 11 C 1.42901 * 113.99649 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.46545 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00589 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99844 * 180.02562 * 12 11 10 15 15 N 1.31502 * 119.99832 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99825 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.47160 * 60.00527 * 16 14 12 18 18 H 1.48501 * 109.46721 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47451 * 300.00244 * 16 14 12 20 20 C 1.46766 * 111.29818 * 0.67369 * 7 5 4 21 21 H 1.09000 * 109.47293 * 297.64561 * 1 2 3 22 22 H 1.09002 * 109.46782 * 57.64501 * 1 2 3 23 23 H 1.08998 * 109.47333 * 177.63696 * 1 2 3 24 24 H 1.08990 * 109.47604 * 182.35651 * 3 2 1 25 25 H 1.09005 * 109.46680 * 302.36182 * 3 2 1 26 26 H 1.09005 * 109.46728 * 62.34853 * 3 2 1 27 27 H 1.08995 * 110.48065 * 334.63817 * 4 2 1 28 28 H 1.09004 * 110.59510 * 212.05684 * 4 2 1 29 29 H 1.09002 * 109.47391 * 330.02357 * 8 7 5 30 30 H 1.09001 * 109.46813 * 210.02413 * 8 7 5 31 31 H 1.09002 * 109.46642 * 184.99913 * 9 8 7 32 32 H 1.09002 * 109.47069 * 304.99442 * 9 8 7 33 33 H 1.08990 * 109.47463 * 299.99806 * 11 10 9 34 34 H 1.08992 * 109.47069 * 60.00902 * 11 10 9 35 35 H 0.97004 * 120.00403 * 179.97438 * 15 14 12 36 36 H 1.08997 * 110.24786 * 101.72113 * 20 7 5 37 37 H 1.09004 * 110.24051 * 223.71756 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0833 -0.8035 1.1997 5 6 2.2954 -2.1958 0.6476 6 8 2.4515 -3.1932 1.3196 7 7 2.2852 -2.1668 -0.6963 8 6 2.4544 -3.3453 -1.5499 9 6 1.0860 -3.9646 -1.8413 10 8 0.3032 -3.0497 -2.6108 11 6 -1.0005 -3.5339 -2.9393 12 6 -1.7339 -2.4937 -3.7463 13 1 -1.2525 -1.5568 -3.9848 14 6 -3.0197 -2.7381 -4.1803 15 7 -3.6061 -3.8786 -3.8895 16 14 -3.9285 -1.4490 -5.1812 17 1 -3.1752 -1.1705 -6.4304 18 1 -5.2838 -1.9516 -5.5215 19 1 -4.0492 -0.2001 -4.3871 20 6 2.0892 -0.8017 -1.1986 21 1 -0.3634 0.4768 0.9103 22 1 -0.3633 0.5500 -0.8681 23 1 -0.3634 -1.0268 -0.0424 24 1 3.1642 1.4028 -0.0422 25 1 1.6911 1.9650 -0.8681 26 1 1.7594 1.9389 0.9104 27 1 1.3582 -0.8220 2.0133 28 1 3.0280 -0.3805 1.5414 29 1 3.0828 -4.0758 -1.0404 30 1 2.9268 -3.0504 -2.4869 31 1 1.2181 -4.8903 -2.4015 32 1 0.5763 -4.1781 -0.9017 33 1 -0.9115 -4.4504 -3.5225 34 1 -1.5537 -3.7386 -2.0228 35 1 -4.5108 -4.0505 -4.1944 36 1 3.0392 -0.3806 -1.5273 37 1 1.3715 -0.8012 -2.0190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720930065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:46 Heat of formation + Delta-G solvation = -118.518241 kcal Electronic energy + Delta-G solvation = -18032.485995 eV Core-core repulsion = 15194.406738 eV Total energy + Delta-G solvation = -2838.079257 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.63503 -38.66768 -38.03157 -35.58803 -34.76805 -31.45949 -29.50403 -28.76355 -28.18851 -26.60256 -24.56279 -23.85802 -20.58915 -20.41107 -18.66268 -17.82284 -17.47827 -17.06840 -16.66607 -16.20196 -16.01848 -15.30245 -15.17447 -14.82964 -14.45634 -14.25585 -14.00102 -13.52453 -13.44522 -13.23473 -12.85383 -12.74084 -12.66406 -12.52051 -12.50136 -12.17778 -12.08176 -11.77375 -11.58165 -11.31405 -10.94164 -10.76079 -10.30398 -9.68257 -8.33189 -6.46350 1.39460 1.44309 1.52571 1.53638 2.09741 2.33067 3.01033 3.10223 3.42681 3.44321 3.84321 3.97490 4.10997 4.12887 4.37551 4.41254 4.49736 4.61126 4.71992 4.75839 4.81627 4.85023 4.85750 4.88705 5.04231 5.11600 5.13603 5.24332 5.36493 5.50099 5.52490 5.59568 5.92302 6.17705 6.47498 6.76328 7.14099 7.25469 8.79281 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.006618 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.732693 B = 4229.870472 C = 4919.131834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 C -0.127 4.127 4 C -0.137 4.137 5 C 0.502 3.498 6 O -0.590 6.590 7 N -0.609 5.609 8 C 0.134 3.866 9 C 0.040 3.960 10 O -0.392 6.392 11 C 0.212 3.788 12 C -0.542 4.542 13 H 0.068 0.932 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.262 1.262 20 C 0.106 3.894 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.020 0.980 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.017 0.983 33 H -0.016 1.016 34 H -0.027 1.027 35 H 0.270 0.730 36 H 0.099 0.901 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.462 11.153 6.051 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.184 4.184 4 C -0.176 4.176 5 C 0.292 3.708 6 O -0.472 6.472 7 N -0.340 5.340 8 C 0.012 3.988 9 C -0.038 4.038 10 O -0.312 6.312 11 C 0.137 3.863 12 C -0.579 4.579 13 H 0.087 0.913 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.806 3.194 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.016 4.016 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.039 0.961 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.150 0.850 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.002 0.998 34 H -0.009 1.009 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.462 10.659 6.241 17.547 hybrid contribution -1.083 -0.714 -0.393 1.356 sum 11.379 9.945 5.848 16.205 Atomic orbital electron populations 1.21773 0.94139 1.00520 1.02841 1.21565 0.95498 0.97085 0.92700 1.21747 1.01585 0.91660 1.03431 1.22533 1.05147 0.90863 0.99088 1.21686 0.74513 0.92026 0.82595 1.90652 1.53245 1.39457 1.63845 1.48366 1.70109 1.09205 1.06337 1.21473 0.94085 0.87471 0.95740 1.22943 0.93305 0.93620 0.93920 1.87784 1.27773 1.43204 1.72392 1.19780 0.79280 0.94472 0.92789 1.21306 0.99425 1.02927 1.34261 0.91338 1.26010 0.97829 0.98327 0.97221 1.70081 1.14852 1.25490 1.46926 0.85229 0.77101 0.78275 0.78818 1.18676 1.20386 1.18702 1.22541 1.01954 0.79655 0.97488 0.90491 0.92052 0.96084 0.90535 0.91559 0.90579 0.87946 0.84964 0.88065 0.87442 0.92327 0.96496 0.99838 1.00935 0.92114 0.88306 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.51 71.98 0.61 -2.97 16 2 C -0.07 -1.44 1.01 -51.06 -0.05 -1.49 16 3 C -0.13 -1.70 8.49 71.98 0.61 -1.09 16 4 C -0.14 -3.01 5.97 30.59 0.18 -2.83 16 5 C 0.50 16.10 8.02 87.89 0.70 16.81 16 6 O -0.59 -23.68 17.59 -3.02 -0.05 -23.73 16 7 N -0.61 -18.50 2.88 -817.61 -2.35 -20.85 16 8 C 0.13 4.11 6.32 86.38 0.55 4.66 16 9 C 0.04 1.59 6.28 71.98 0.45 2.04 16 10 O -0.39 -18.77 9.54 -148.98 -1.42 -20.20 16 11 C 0.21 12.04 5.69 71.24 0.41 12.45 16 12 C -0.54 -31.71 9.43 25.60 0.24 -31.47 16 13 H 0.07 3.87 7.81 -2.91 -0.02 3.84 16 14 C 0.00 0.25 5.46 84.66 0.46 0.72 16 15 N -0.93 -56.70 13.28 21.45 0.28 -56.42 16 16 Si 0.98 43.60 29.54 68.60 2.03 45.63 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 20 C 0.11 2.65 6.41 86.90 0.56 3.21 16 21 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 25 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 26 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.10 2.22 7.91 -2.39 -0.02 2.20 16 28 H 0.13 2.09 7.90 -2.38 -0.02 2.07 16 29 H 0.10 2.85 7.92 -2.39 -0.02 2.84 16 30 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.10 1.85 7.85 -2.39 -0.02 1.83 16 37 H 0.07 2.18 7.24 -2.39 -0.02 2.16 16 Total: -1.00 -72.91 310.18 4.23 -68.69 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.02 Total: 6.84 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 4.72 Total: 0.03 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -2.07 Total: -77.27 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.47 Total: -43.92 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -72.91 4.23 -68.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720930065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.831 kcal (2) G-P(sol) polarization free energy of solvation -72.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds