Wall clock time and date at job start Mon Mar 30 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99914 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99803 * 3 2 1 6 6 H 1.48500 * 109.47209 * 149.99768 * 3 2 1 7 7 C 1.37875 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46035 * 299.97365 * 12 11 10 14 14 O 1.20824 * 120.00248 * 264.99993 * 13 12 11 15 15 O 1.34235 * 119.99618 * 85.00316 * 13 12 11 16 16 C 1.53036 * 109.46237 * 180.02562 * 12 11 10 17 17 C 1.53123 * 109.27714 * 180.80108 * 16 12 11 18 18 C 1.53119 * 109.16065 * 57.65493 * 17 16 12 19 19 C 1.53039 * 109.27607 * 302.34558 * 18 17 16 20 20 N 1.46837 * 109.46686 * 59.94415 * 12 11 10 21 21 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 23 23 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 26 26 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 27 27 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 28 28 H 0.96706 * 116.99500 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.50570 * 300.74293 * 16 12 11 30 30 H 1.08999 * 109.50652 * 60.82329 * 16 12 11 31 31 H 1.08999 * 109.52305 * 177.55605 * 17 16 12 32 32 H 1.08997 * 109.52325 * 297.68422 * 17 16 12 33 33 H 1.08999 * 109.50375 * 62.28260 * 18 17 16 34 34 H 1.08997 * 109.50590 * 182.40394 * 18 17 16 35 35 H 1.09001 * 109.46315 * 179.19692 * 19 18 17 36 36 H 1.09003 * 109.46003 * 299.16505 * 19 18 17 37 37 H 1.00901 * 111.00138 * 305.86117 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5514 -2.6366 0.0022 12 6 6.0614 -4.0791 0.0028 13 6 5.5595 -4.7886 1.2339 14 8 6.2526 -4.8479 2.2218 15 8 4.3424 -5.3548 1.2329 16 6 7.5918 -4.0789 0.0033 17 6 8.0975 -5.5241 -0.0163 18 6 7.5336 -6.2371 -1.2484 19 6 6.0049 -6.1747 -1.2127 20 7 5.5708 -4.7721 -1.1953 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6805 -0.8889 24 1 3.6579 -3.1498 0.8925 25 1 3.6585 -3.1510 -0.8874 26 1 5.9148 -2.1236 -0.8882 27 1 5.9149 -2.1220 0.8918 28 1 4.0642 -5.7989 2.0457 29 1 7.9560 -3.5538 -0.8797 30 1 7.9553 -3.5778 0.9004 31 1 9.1866 -5.5283 -0.0598 32 1 7.7670 -6.0380 0.8862 33 1 7.8968 -5.7460 -2.1512 34 1 7.8554 -7.2785 -1.2454 35 1 5.6004 -6.6691 -2.0959 36 1 5.6417 -6.6780 -0.3166 37 1 4.5667 -4.7030 -1.2672 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722719865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:57 Heat of formation + Delta-G solvation = -114.713513 kcal Electronic energy + Delta-G solvation = -18261.374970 eV Core-core repulsion = 15423.460699 eV Total energy + Delta-G solvation = -2837.914271 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02962 -38.02053 -36.10002 -34.90485 -32.74746 -31.90912 -30.81722 -27.33212 -24.82850 -23.82292 -22.98948 -21.11768 -19.91857 -19.40422 -17.86936 -17.07744 -16.69258 -15.93372 -15.62089 -14.37214 -14.18651 -14.10203 -13.96908 -13.48523 -13.32149 -13.21910 -12.71596 -12.22981 -11.89723 -11.81873 -11.65607 -11.47656 -11.00030 -10.89489 -10.78982 -10.72889 -10.51690 -10.40124 -9.88727 -9.69657 -9.46825 -9.14508 -8.57431 -8.51568 -6.02428 -4.00118 2.28162 3.07493 3.32330 3.39666 3.43551 4.12141 4.47162 4.56877 4.71608 4.83746 4.99021 5.21712 5.26785 5.31762 5.46813 5.53972 5.59952 5.71200 5.77466 5.85296 5.90671 5.98903 6.05919 6.20969 6.24268 6.52194 6.56641 6.65351 6.85271 6.94464 7.30545 7.35207 7.44381 7.81402 7.97015 8.56168 9.02799 9.60435 11.11106 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036802 B = 0.005778 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.635585 B = 4845.160145 C = 4952.955916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.107 4.107 11 C -0.113 4.113 12 C 0.135 3.865 13 C 0.461 3.539 14 O -0.522 6.522 15 O -0.511 6.511 16 C -0.098 4.098 17 C -0.128 4.128 18 C -0.120 4.120 19 C 0.051 3.949 20 N -0.665 5.665 21 H 0.262 0.738 22 H 0.013 0.987 23 H 0.013 0.987 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.404 0.596 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.818 -11.763 -1.334 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.050 4.050 10 C -0.144 4.144 11 C -0.151 4.151 12 C 0.042 3.958 13 C 0.302 3.698 14 O -0.409 6.409 15 O -0.323 6.323 16 C -0.136 4.136 17 C -0.166 4.166 18 C -0.158 4.158 19 C -0.078 4.078 20 N -0.300 5.300 21 H 0.072 0.928 22 H 0.032 0.968 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.262 0.738 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.049 0.951 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.475 -11.258 -1.819 19.223 hybrid contribution -0.532 0.209 1.331 1.449 sum 14.943 -11.048 -0.488 18.591 Atomic orbital electron populations 1.69920 1.06306 1.26820 1.51365 1.25038 0.94726 0.99175 0.94629 0.86779 0.80357 0.83646 0.78509 1.20252 1.21469 1.19046 1.21148 0.89532 0.94419 1.50552 0.91054 1.19559 0.97162 0.92089 0.96226 1.21572 0.91058 1.00306 1.01509 1.21874 0.98885 0.90850 1.03483 1.21214 0.96201 0.95440 0.82993 1.24989 0.78411 0.75326 0.91104 1.90651 1.57296 1.56849 1.36082 1.84638 1.35070 1.67146 1.45400 1.21559 0.90903 0.97621 1.03490 1.21676 1.00632 0.95914 0.98354 1.21647 0.94959 1.00207 0.98963 1.22026 0.95927 0.88943 1.00923 1.60448 1.19442 1.13625 1.36472 0.92801 0.96830 0.96856 0.92589 0.92040 0.89434 0.91207 0.73755 0.89546 0.90390 0.91424 0.91931 0.90800 0.91760 0.90159 0.95052 0.81568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.11 -2.06 4.42 -26.73 -0.12 -2.17 16 11 C -0.11 -1.79 4.45 -26.73 -0.12 -1.91 16 12 C 0.13 1.88 0.69 -132.77 -0.09 1.79 16 13 C 0.46 6.89 4.40 36.01 0.16 7.05 16 14 O -0.52 -8.84 15.80 -18.75 -0.30 -9.14 16 15 O -0.51 -6.79 10.84 -39.27 -0.43 -7.22 16 16 C -0.10 -1.20 4.53 -26.65 -0.12 -1.32 16 17 C -0.13 -1.41 5.72 -26.61 -0.15 -1.56 16 18 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 19 C 0.05 0.56 6.24 -3.84 -0.02 0.54 16 20 N -0.66 -8.60 6.16 -101.18 -0.62 -9.22 16 21 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 22 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 23 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 24 H 0.06 1.12 6.40 -51.93 -0.33 0.78 16 25 H 0.06 1.16 6.52 -51.93 -0.34 0.82 16 26 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.40 3.80 9.10 45.56 0.41 4.22 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.99 7.84 -51.93 -0.41 0.58 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.79 6.58 -51.93 -0.34 0.45 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.37 6.46 -51.93 -0.34 0.03 16 37 H 0.36 4.98 6.49 -39.29 -0.26 4.73 16 LS Contribution 288.16 15.07 4.34 4.34 Total: -1.00 -32.47 288.16 -6.98 -39.45 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.91 Total: 4.58 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -1.17 Total: -12.70 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.15 Total: -36.53 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.72 Total: -16.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.47 -6.98 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722719865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.267 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds