Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48497 * 109.47017 * 269.99914 * 3 2 1 5 5 H 1.48507 * 109.47241 * 29.99803 * 3 2 1 6 6 H 1.48500 * 109.47209 * 149.99768 * 3 2 1 7 7 C 1.37875 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46035 * 299.97365 * 12 11 10 14 14 O 1.20824 * 120.00248 * 264.99993 * 13 12 11 15 15 O 1.34235 * 119.99618 * 85.00316 * 13 12 11 16 16 C 1.53036 * 109.46237 * 180.02562 * 12 11 10 17 17 C 1.53123 * 109.27714 * 180.80108 * 16 12 11 18 18 C 1.53119 * 109.16065 * 57.65493 * 17 16 12 19 19 C 1.53039 * 109.27607 * 302.34558 * 18 17 16 20 20 N 1.46837 * 109.46686 * 59.94415 * 12 11 10 21 21 H 0.97007 * 120.00011 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 23 23 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 26 26 H 1.09001 * 109.47289 * 299.99953 * 11 10 9 27 27 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 28 28 H 0.96706 * 116.99500 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.50570 * 300.74293 * 16 12 11 30 30 H 1.08999 * 109.50652 * 60.82329 * 16 12 11 31 31 H 1.08999 * 109.52305 * 177.55605 * 17 16 12 32 32 H 1.08997 * 109.52325 * 297.68422 * 17 16 12 33 33 H 1.08999 * 109.50375 * 62.28260 * 18 17 16 34 34 H 1.08997 * 109.50590 * 182.40394 * 18 17 16 35 35 H 1.09001 * 109.46315 * 179.19692 * 19 18 17 36 36 H 1.09003 * 109.46003 * 299.16505 * 19 18 17 37 37 H 1.00901 * 111.00138 * 305.86117 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5514 -2.6366 0.0022 12 6 6.0614 -4.0791 0.0028 13 6 5.5595 -4.7886 1.2339 14 8 6.2526 -4.8479 2.2218 15 8 4.3424 -5.3548 1.2329 16 6 7.5918 -4.0789 0.0033 17 6 8.0975 -5.5241 -0.0163 18 6 7.5336 -6.2371 -1.2484 19 6 6.0049 -6.1747 -1.2127 20 7 5.5708 -4.7721 -1.1953 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6805 -0.8889 24 1 3.6579 -3.1498 0.8925 25 1 3.6585 -3.1510 -0.8874 26 1 5.9148 -2.1236 -0.8882 27 1 5.9149 -2.1220 0.8918 28 1 4.0642 -5.7989 2.0457 29 1 7.9560 -3.5538 -0.8797 30 1 7.9553 -3.5778 0.9004 31 1 9.1866 -5.5283 -0.0598 32 1 7.7670 -6.0380 0.8862 33 1 7.8968 -5.7460 -2.1512 34 1 7.8554 -7.2785 -1.2454 35 1 5.6004 -6.6691 -2.0959 36 1 5.6417 -6.6780 -0.3166 37 1 4.5667 -4.7030 -1.2672 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722719865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = -137.907419 kcal Electronic energy + Delta-G solvation = -18262.380733 eV Core-core repulsion = 15423.460699 eV Total energy + Delta-G solvation = -2838.920035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.14244 -39.07453 -37.26383 -36.41687 -34.58535 -32.92506 -32.33869 -28.89922 -26.08933 -24.93606 -24.34002 -22.43774 -21.40632 -20.43350 -19.01568 -18.86491 -18.12553 -17.02951 -16.82391 -16.18995 -15.62418 -15.19446 -14.97673 -14.79651 -14.57292 -14.43232 -14.14155 -13.66120 -13.34891 -13.23313 -12.80603 -12.73953 -12.53651 -12.44062 -11.96000 -11.83957 -11.72499 -11.65630 -11.39878 -11.35375 -11.26713 -10.95562 -10.73944 -9.59886 -8.27525 -6.31150 1.11366 1.37275 1.39170 1.51008 2.03899 2.37978 3.08129 3.11153 3.54411 3.68540 3.99353 4.09198 4.22803 4.24374 4.31743 4.47657 4.57633 4.68757 4.77219 4.83464 4.93585 4.97628 5.04398 5.08936 5.11417 5.15445 5.22060 5.39975 5.52168 5.57196 5.62149 5.68752 5.91316 6.28000 6.31468 6.76966 6.90055 7.33466 8.89336 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.036802 B = 0.005778 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.635585 B = 4845.160145 C = 4952.955916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.031 0.969 9 C -0.012 4.012 10 C -0.096 4.096 11 C -0.106 4.106 12 C 0.136 3.864 13 C 0.460 3.540 14 O -0.545 6.545 15 O -0.514 6.514 16 C -0.098 4.098 17 C -0.126 4.126 18 C -0.115 4.115 19 C 0.047 3.953 20 N -0.664 5.664 21 H 0.265 0.735 22 H 0.014 0.986 23 H 0.024 0.976 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.419 0.581 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.023 0.977 37 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.130 -11.476 -2.120 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.050 0.950 9 C -0.049 4.049 10 C -0.134 4.134 11 C -0.143 4.143 12 C 0.043 3.957 13 C 0.302 3.698 14 O -0.435 6.435 15 O -0.327 6.327 16 C -0.135 4.135 17 C -0.164 4.164 18 C -0.153 4.153 19 C -0.082 4.082 20 N -0.298 5.298 21 H 0.074 0.926 22 H 0.032 0.968 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.041 0.959 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 17.798 -11.001 -2.605 21.085 hybrid contribution -1.358 0.009 1.590 2.091 sum 16.440 -10.992 -1.015 19.802 Atomic orbital electron populations 1.70078 1.08335 1.28072 1.52946 1.26038 0.95611 1.03583 0.94224 0.85654 0.79439 0.78196 0.79346 1.18820 1.21231 1.17081 1.21517 0.92253 0.93017 1.50007 0.95035 1.19531 0.93803 0.95092 0.96494 1.21390 0.93722 0.97315 1.00994 1.21755 0.95899 0.92532 1.04144 1.21232 0.97404 0.94162 0.82946 1.25297 0.78388 0.75025 0.91112 1.90638 1.57951 1.57886 1.36989 1.84610 1.34516 1.67039 1.46551 1.21594 0.89387 0.98708 1.03847 1.21665 1.01784 0.94894 0.98028 1.21645 0.93749 1.01287 0.98601 1.22162 0.97038 0.87773 1.01206 1.60515 1.18881 1.14815 1.35578 0.92598 0.96796 0.95727 0.93900 0.91968 0.88035 0.91279 0.72012 0.88095 0.91039 0.89582 0.93847 0.90044 0.90007 0.88684 0.95925 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 2 C 0.00 0.10 5.47 84.65 0.46 0.57 16 3 Si 0.95 44.51 27.47 68.60 1.88 46.40 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 7 C -0.53 -30.77 9.66 25.60 0.25 -30.52 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 10 C -0.10 -3.65 4.42 30.60 0.14 -3.52 16 11 C -0.11 -3.15 4.45 30.59 0.14 -3.01 16 12 C 0.14 3.57 0.69 2.80 0.00 3.58 16 13 C 0.46 13.42 4.40 71.24 0.31 13.73 16 14 O -0.55 -18.21 15.80 21.97 0.35 -17.87 16 15 O -0.51 -13.50 10.84 -51.47 -0.56 -14.06 16 16 C -0.10 -2.17 4.53 30.65 0.14 -2.04 16 17 C -0.13 -2.48 5.72 30.68 0.18 -2.31 16 18 C -0.12 -1.95 6.09 30.65 0.19 -1.77 16 19 C 0.05 0.94 6.24 86.33 0.54 1.48 16 20 N -0.66 -16.01 6.16 -474.03 -2.92 -18.93 16 21 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 22 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 23 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 24 H 0.04 1.71 6.40 -2.39 -0.02 1.70 16 25 H 0.06 2.32 6.52 -2.39 -0.02 2.31 16 26 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.42 7.80 9.10 -74.05 -0.67 7.12 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.68 7.84 -2.39 -0.02 1.67 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.03 6.58 -2.39 -0.02 1.01 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.02 0.50 6.46 -2.39 -0.02 0.48 16 37 H 0.35 9.38 6.49 -89.69 -0.58 8.80 16 Total: -1.00 -69.99 288.16 1.27 -68.72 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.24 Total: 20.08 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 2.46 Total: -24.23 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -2.62 Total: -79.05 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.21 Total: -31.92 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -69.99 1.27 -68.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722719865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.183 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds