Wall clock time and date at job start Mon Mar 30 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47323 * 2 1 4 4 C 1.50695 * 112.93760 * 59.83447 * 3 2 1 5 5 O 1.20827 * 120.00079 * 234.18919 * 4 3 2 6 6 O 1.34227 * 120.00339 * 54.46791 * 4 3 2 7 7 C 1.53941 * 113.83124 * 191.49513 * 3 2 1 8 8 N 1.47960 * 86.18219 * 90.64827 * 7 3 2 9 9 C 1.46896 * 110.99645 * 137.58379 * 8 7 3 10 10 H 1.08991 * 109.47270 * 320.63612 * 9 8 7 11 11 C 1.53004 * 109.46785 * 200.63936 * 9 8 7 12 12 C 1.53001 * 109.47103 * 80.64147 * 9 8 7 13 13 C 1.50690 * 109.46902 * 294.99587 * 12 9 8 14 14 H 1.08000 * 120.00385 * 0.02562 * 13 12 9 15 15 C 1.37881 * 119.99580 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00330 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99749 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47053 * 60.00646 * 17 15 13 19 19 H 1.48504 * 109.47176 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47177 * 300.00179 * 17 15 13 21 21 C 1.47966 * 90.76119 * 24.68926 * 8 7 3 22 22 H 1.08999 * 109.47089 * 305.41294 * 1 2 3 23 23 H 1.08999 * 109.46967 * 65.41274 * 1 2 3 24 24 H 1.08997 * 109.47402 * 185.40687 * 1 2 3 25 25 H 1.08999 * 109.47374 * 239.99837 * 2 1 3 26 26 H 1.09000 * 109.47307 * 119.99976 * 2 1 3 27 27 H 0.96703 * 117.00372 * 179.72917 * 6 4 3 28 28 H 1.08993 * 113.75708 * 204.97246 * 7 3 2 29 29 H 1.09003 * 113.75614 * 336.33104 * 7 3 2 30 30 H 1.09005 * 109.46951 * 59.99880 * 11 9 8 31 31 H 1.08995 * 109.47368 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.47418 * 300.00092 * 11 9 8 33 33 H 1.09003 * 109.46974 * 55.00131 * 12 9 8 34 34 H 1.09001 * 109.46754 * 174.99716 * 12 9 8 35 35 H 0.97000 * 120.00060 * 179.97438 * 16 15 13 36 36 H 1.09006 * 113.75676 * 220.98912 * 21 8 7 37 37 H 1.08995 * 113.85761 * 89.64106 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5783 2.2287 1.1999 5 8 1.0025 3.2801 1.0482 6 8 1.8116 1.7638 2.4372 7 6 3.5483 1.5689 -0.2806 8 7 3.1733 1.6755 -1.7079 9 6 3.9557 2.7207 -2.3811 10 1 4.0713 3.5746 -1.7138 11 6 3.2290 3.1622 -3.6531 12 6 5.3351 2.1691 -2.7471 13 6 6.0982 1.8486 -1.4879 14 1 5.6447 2.0207 -0.5230 15 6 7.3752 1.3347 -1.5676 16 7 7.9274 1.1247 -2.7426 17 14 8.3215 0.9381 -0.0066 18 1 7.5752 -0.0761 0.7805 19 1 9.6603 0.4026 -0.3619 20 1 8.4816 2.1730 0.8024 21 6 1.8301 2.1738 -1.3382 22 1 -0.3633 0.5955 0.8375 23 1 -0.3633 0.4276 -0.9345 24 1 -0.3634 -1.0230 0.0968 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.5002 2.3050 3.1756 28 1 3.9959 2.4762 0.1249 29 1 4.1163 0.6697 -0.0418 30 1 2.2463 3.5551 -3.3923 31 1 3.8097 3.9374 -4.1529 32 1 3.1134 2.3082 -4.3205 33 1 5.2180 1.2630 -3.3417 34 1 5.8828 2.9141 -3.3243 35 1 8.8259 0.7635 -2.7987 36 1 1.0252 1.7581 -1.9444 37 1 1.7732 3.2580 -1.2418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722848263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:35 Heat of formation + Delta-G solvation = -70.464375 kcal Electronic energy + Delta-G solvation = -18348.629619 eV Core-core repulsion = 15512.634134 eV Total energy + Delta-G solvation = -2835.995485 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02600 -38.95605 -36.00383 -34.76392 -32.67859 -31.41857 -27.92655 -27.18692 -25.32227 -23.59154 -23.07729 -22.18963 -19.60264 -18.80422 -17.75078 -16.66273 -16.09787 -15.68890 -15.11455 -14.67105 -14.33497 -13.87805 -13.58570 -13.22341 -12.94233 -12.65798 -12.23655 -11.92434 -11.74130 -11.50808 -11.42658 -11.31242 -11.14753 -11.05580 -10.83230 -10.52283 -10.48908 -10.39864 -10.12375 -9.97008 -9.12775 -8.90189 -8.34164 -8.12958 -5.97349 -3.98447 2.28448 3.11500 3.32847 3.38066 3.39443 4.31659 4.46694 4.48521 4.89037 5.16923 5.32512 5.38916 5.41566 5.57619 5.65868 5.73381 5.86107 5.89256 5.91429 6.02028 6.14813 6.17278 6.24616 6.39121 6.44727 6.49819 6.54623 6.64381 6.85928 7.16417 7.46966 7.67934 7.97416 7.99109 8.03823 8.42901 9.05345 9.64128 11.14171 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022578 B = 0.007929 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.866877 B = 3530.530201 C = 4144.538874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.098 4.098 4 C 0.495 3.505 5 O -0.521 6.521 6 O -0.512 6.512 7 C 0.054 3.946 8 N -0.452 5.452 9 C 0.052 3.948 10 H 0.035 0.965 11 C -0.143 4.143 12 C 0.034 3.966 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.885 3.115 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.279 1.279 21 C 0.022 3.978 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.403 0.597 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.027 0.973 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.090 0.910 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 -0.449 6.265 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.128 4.128 3 C -0.100 4.100 4 C 0.338 3.662 5 O -0.410 6.410 6 O -0.322 6.322 7 C -0.075 4.075 8 N -0.176 5.176 9 C -0.057 4.057 10 H 0.053 0.947 11 C -0.201 4.201 12 C -0.004 4.004 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.713 3.287 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.107 4.107 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.261 0.739 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.854 -1.018 5.336 13.955 hybrid contribution 0.447 1.028 1.856 2.168 sum -12.408 0.010 7.192 14.342 Atomic orbital electron populations 1.21797 0.95858 1.01652 1.01627 1.21256 0.95305 0.92016 1.04236 1.22734 1.00613 0.97057 0.89614 1.23553 0.74502 0.84064 0.84101 1.90677 1.39645 1.23898 1.86737 1.84602 1.76170 1.54665 1.16801 1.23930 0.89941 1.03596 0.90017 1.68616 1.00504 1.37473 1.10971 1.22367 0.96900 0.92076 0.94331 0.94707 1.21855 0.98890 1.01015 0.98310 1.19088 0.87743 0.96545 0.96996 1.21358 0.99294 1.42213 0.92973 0.92203 1.24973 0.97689 0.95891 0.95634 1.69949 1.15163 1.45236 1.23047 0.86776 0.79341 0.78699 0.83917 1.20106 1.21348 1.20437 1.23956 0.96110 0.98782 0.91823 0.93647 0.92334 0.92202 0.88921 0.90732 0.73927 0.90897 0.87682 0.94105 0.92614 0.92267 0.95471 0.96299 0.93043 0.89178 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.64 37.15 0.36 -1.33 16 2 C -0.09 -1.17 5.27 -26.73 -0.14 -1.31 16 3 C -0.10 -1.49 0.93 -154.73 -0.14 -1.63 16 4 C 0.50 7.37 6.23 36.00 0.22 7.60 16 5 O -0.52 -8.92 16.70 -18.75 -0.31 -9.23 16 6 O -0.51 -6.19 13.36 -39.25 -0.52 -6.72 16 7 C 0.05 0.98 4.62 -2.76 -0.01 0.97 16 8 N -0.45 -8.51 5.81 -229.99 -1.34 -9.85 16 9 C 0.05 1.06 1.98 -67.71 -0.13 0.93 16 10 H 0.03 0.74 7.62 -51.93 -0.40 0.35 16 11 C -0.14 -2.51 9.09 37.16 0.34 -2.17 16 12 C 0.03 0.85 4.65 -27.89 -0.13 0.72 16 13 C -0.52 -14.06 8.17 -34.44 -0.28 -14.34 16 14 H 0.06 1.53 4.66 -52.49 -0.24 1.29 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 17 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.02 0.35 5.46 -2.76 -0.02 0.34 16 22 H 0.04 0.51 7.22 -51.93 -0.38 0.14 16 23 H 0.06 0.64 7.34 -51.93 -0.38 0.26 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.09 1.26 8.02 -51.93 -0.42 0.85 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.40 3.02 9.10 45.56 0.41 3.44 16 28 H 0.07 1.41 6.64 -51.93 -0.34 1.07 16 29 H 0.10 2.02 7.83 -51.93 -0.41 1.61 16 30 H 0.04 0.63 7.02 -51.93 -0.36 0.26 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.09 1.29 7.28 -51.93 -0.38 0.91 16 37 H 0.07 1.25 7.01 -51.93 -0.36 0.89 16 LS Contribution 298.42 15.07 4.50 4.50 Total: -1.00 -31.18 298.42 -6.92 -38.10 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.93 Total: 1.45 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.03 Total: -8.67 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.60 Total: -35.71 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.84 Total: -15.95 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.18 -6.92 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722848263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.364 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds