Wall clock time and date at job start Mon Mar 30 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47323 * 2 1 4 4 C 1.50695 * 112.93760 * 59.83447 * 3 2 1 5 5 O 1.20827 * 120.00079 * 234.18919 * 4 3 2 6 6 O 1.34227 * 120.00339 * 54.46791 * 4 3 2 7 7 C 1.53941 * 113.83124 * 191.49513 * 3 2 1 8 8 N 1.47960 * 86.18219 * 90.64827 * 7 3 2 9 9 C 1.46896 * 110.99645 * 137.58379 * 8 7 3 10 10 H 1.08991 * 109.47270 * 320.63612 * 9 8 7 11 11 C 1.53004 * 109.46785 * 200.63936 * 9 8 7 12 12 C 1.53001 * 109.47103 * 80.64147 * 9 8 7 13 13 C 1.50690 * 109.46902 * 294.99587 * 12 9 8 14 14 H 1.08000 * 120.00385 * 0.02562 * 13 12 9 15 15 C 1.37881 * 119.99580 * 179.97438 * 13 12 9 16 16 N 1.31513 * 120.00330 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99749 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47053 * 60.00646 * 17 15 13 19 19 H 1.48504 * 109.47176 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47177 * 300.00179 * 17 15 13 21 21 C 1.47966 * 90.76119 * 24.68926 * 8 7 3 22 22 H 1.08999 * 109.47089 * 305.41294 * 1 2 3 23 23 H 1.08999 * 109.46967 * 65.41274 * 1 2 3 24 24 H 1.08997 * 109.47402 * 185.40687 * 1 2 3 25 25 H 1.08999 * 109.47374 * 239.99837 * 2 1 3 26 26 H 1.09000 * 109.47307 * 119.99976 * 2 1 3 27 27 H 0.96703 * 117.00372 * 179.72917 * 6 4 3 28 28 H 1.08993 * 113.75708 * 204.97246 * 7 3 2 29 29 H 1.09003 * 113.75614 * 336.33104 * 7 3 2 30 30 H 1.09005 * 109.46951 * 59.99880 * 11 9 8 31 31 H 1.08995 * 109.47368 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.47418 * 300.00092 * 11 9 8 33 33 H 1.09003 * 109.46974 * 55.00131 * 12 9 8 34 34 H 1.09001 * 109.46754 * 174.99716 * 12 9 8 35 35 H 0.97000 * 120.00060 * 179.97438 * 16 15 13 36 36 H 1.09006 * 113.75676 * 220.98912 * 21 8 7 37 37 H 1.08995 * 113.85761 * 89.64106 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5783 2.2287 1.1999 5 8 1.0025 3.2801 1.0482 6 8 1.8116 1.7638 2.4372 7 6 3.5483 1.5689 -0.2806 8 7 3.1733 1.6755 -1.7079 9 6 3.9557 2.7207 -2.3811 10 1 4.0713 3.5746 -1.7138 11 6 3.2290 3.1622 -3.6531 12 6 5.3351 2.1691 -2.7471 13 6 6.0982 1.8486 -1.4879 14 1 5.6447 2.0207 -0.5230 15 6 7.3752 1.3347 -1.5676 16 7 7.9274 1.1247 -2.7426 17 14 8.3215 0.9381 -0.0066 18 1 7.5752 -0.0761 0.7805 19 1 9.6603 0.4026 -0.3619 20 1 8.4816 2.1730 0.8024 21 6 1.8301 2.1738 -1.3382 22 1 -0.3633 0.5955 0.8375 23 1 -0.3633 0.4276 -0.9345 24 1 -0.3634 -1.0230 0.0968 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.5002 2.3050 3.1756 28 1 3.9959 2.4762 0.1249 29 1 4.1163 0.6697 -0.0418 30 1 2.2463 3.5551 -3.3923 31 1 3.8097 3.9374 -4.1529 32 1 3.1134 2.3082 -4.3205 33 1 5.2180 1.2630 -3.3417 34 1 5.8828 2.9141 -3.3243 35 1 8.8259 0.7635 -2.7987 36 1 1.0252 1.7581 -1.9444 37 1 1.7732 3.2580 -1.2418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722848263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:35 Heat of formation + Delta-G solvation = -92.873373 kcal Electronic energy + Delta-G solvation = -18349.601346 eV Core-core repulsion = 15512.634134 eV Total energy + Delta-G solvation = -2836.967212 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.30026 -40.23688 -37.11916 -36.32111 -34.51618 -32.83663 -29.78114 -28.43453 -26.82044 -25.27671 -24.27088 -23.64248 -21.16046 -20.09320 -18.91528 -18.45329 -17.54997 -17.12492 -16.55722 -16.33623 -15.68696 -15.24570 -14.83669 -14.70735 -14.29231 -13.93471 -13.86756 -13.43976 -13.19385 -13.01307 -12.88329 -12.63907 -12.60175 -12.50324 -12.35294 -12.18422 -12.06188 -11.89001 -11.46563 -11.31179 -10.98149 -10.79760 -10.50343 -9.65490 -8.13314 -6.20996 1.10744 1.41002 1.42861 1.49862 2.03743 2.43708 2.98355 3.15313 3.25433 3.74665 3.90592 4.20863 4.21520 4.31440 4.43195 4.48776 4.56659 4.58663 4.63526 4.73346 4.87233 4.96139 5.06276 5.12335 5.15419 5.27355 5.27979 5.43824 5.49577 5.53968 5.56001 5.62110 5.89522 6.23716 6.32674 6.92400 6.96435 7.46057 8.98922 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022578 B = 0.007929 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.866877 B = 3530.530201 C = 4144.538874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.085 4.085 4 C 0.502 3.498 5 O -0.545 6.545 6 O -0.505 6.505 7 C 0.046 3.954 8 N -0.465 5.465 9 C 0.059 3.941 10 H 0.027 0.973 11 C -0.136 4.136 12 C 0.040 3.960 13 C -0.528 4.528 14 H 0.072 0.928 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.951 3.049 18 H -0.262 1.262 19 H -0.288 1.288 20 H -0.271 1.271 21 C 0.028 3.972 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.425 0.575 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.057 0.943 33 H -0.003 1.003 34 H -0.009 1.009 35 H 0.260 0.740 36 H 0.111 0.889 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 -0.795 7.912 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.087 4.087 4 C 0.345 3.655 5 O -0.435 6.435 6 O -0.318 6.318 7 C -0.083 4.083 8 N -0.188 5.188 9 C -0.050 4.050 10 H 0.045 0.955 11 C -0.193 4.193 12 C 0.002 3.998 13 C -0.566 4.566 14 H 0.090 0.910 15 C -0.196 4.196 16 N -0.577 5.577 17 Si 0.776 3.224 18 H -0.187 1.187 19 H -0.214 1.214 20 H -0.196 1.196 21 C -0.100 4.100 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.287 0.713 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.015 0.985 34 H 0.009 0.991 35 H 0.069 0.931 36 H 0.129 0.871 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.429 -1.363 7.018 16.103 hybrid contribution 0.916 1.134 1.370 2.000 sum -13.513 -0.229 8.388 15.907 Atomic orbital electron populations 1.21762 0.94038 1.02919 1.01685 1.21276 0.96787 0.90262 1.04228 1.22596 0.97843 0.98468 0.89786 1.23310 0.73990 0.83380 0.84779 1.90678 1.40890 1.24722 1.87221 1.84538 1.75710 1.54901 1.16636 1.23809 0.92263 1.02227 0.89992 1.68547 1.01879 1.37071 1.11295 1.22134 0.95094 0.91899 0.95835 0.95544 1.21782 0.99856 1.01052 0.96651 1.18934 0.90516 0.94499 0.95816 1.21800 0.99523 1.41253 0.94029 0.90979 1.25866 0.98941 0.95956 0.98823 1.70097 1.15551 1.46568 1.25439 0.85707 0.77755 0.78908 0.79994 1.18700 1.21378 1.19588 1.23964 0.94752 0.98665 0.92645 0.93771 0.92117 0.90329 0.89728 0.90016 0.71319 0.92373 0.89046 0.91461 0.92413 0.92436 0.98489 0.99069 0.93136 0.87052 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.64 71.98 0.69 -2.11 16 2 C -0.09 -2.08 5.27 30.59 0.16 -1.92 16 3 C -0.09 -2.42 0.93 -52.28 -0.05 -2.47 16 4 C 0.50 13.84 6.23 71.23 0.44 14.29 16 5 O -0.54 -17.53 16.70 21.96 0.37 -17.16 16 6 O -0.50 -10.81 13.36 -51.39 -0.69 -11.49 16 7 C 0.05 1.66 4.62 86.41 0.40 2.06 16 8 N -0.46 -17.26 5.81 -881.55 -5.13 -22.38 16 9 C 0.06 2.45 1.98 44.92 0.09 2.54 16 10 H 0.03 1.14 7.62 -2.39 -0.02 1.12 16 11 C -0.14 -4.66 9.09 71.98 0.65 -4.01 16 12 C 0.04 2.08 4.65 29.85 0.14 2.22 16 13 C -0.53 -29.05 8.17 25.60 0.21 -28.85 16 14 H 0.07 3.72 4.66 -2.91 -0.01 3.70 16 15 C 0.00 0.07 5.46 84.66 0.46 0.54 16 16 N -0.94 -57.06 13.29 21.45 0.28 -56.78 16 17 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.03 0.84 5.46 86.40 0.47 1.32 16 22 H 0.04 0.86 7.22 -2.39 -0.02 0.84 16 23 H 0.06 1.14 7.34 -2.39 -0.02 1.12 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 2.16 8.02 -2.39 -0.02 2.14 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.43 5.06 9.10 -74.06 -0.67 4.38 16 28 H 0.06 2.25 6.64 -2.39 -0.02 2.23 16 29 H 0.09 3.50 7.83 -2.39 -0.02 3.48 16 30 H 0.07 1.95 7.02 -2.38 -0.02 1.93 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.11 2.88 7.28 -2.38 -0.02 2.86 16 37 H 0.07 2.20 7.01 -2.39 -0.02 2.18 16 Total: -1.00 -67.47 298.42 0.93 -66.54 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.39 Total: 11.78 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 3.68 Total: -16.40 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -4.84 Total: -79.16 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.32 Total: -28.65 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.47 0.93 -66.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722848263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.333 kcal (2) G-P(sol) polarization free energy of solvation -67.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds