Wall clock time and date at job start Mon Mar 30 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47540 * 2 1 4 4 C 1.50697 * 113.38254 * 67.69974 * 3 2 1 5 5 O 1.20829 * 120.00156 * 226.53839 * 4 3 2 6 6 O 1.34228 * 120.00269 * 46.53237 * 4 3 2 7 7 C 1.53507 * 114.17207 * 294.61502 * 3 2 1 8 8 N 1.47476 * 87.93530 * 220.32931 * 7 3 2 9 9 C 1.46900 * 110.99967 * 138.70744 * 8 7 3 10 10 H 1.08996 * 109.46819 * 299.99633 * 9 8 7 11 11 C 1.52988 * 109.47444 * 59.99825 * 9 8 7 12 12 C 1.53001 * 109.47087 * 180.02562 * 9 8 7 13 13 C 1.50697 * 109.47410 * 64.99365 * 12 9 8 14 14 H 1.08001 * 120.00016 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00172 * 179.97438 * 13 12 9 16 16 N 1.31512 * 119.99979 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00023 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47121 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47418 * 120.00417 * 17 15 13 20 20 H 1.48512 * 109.47333 * 240.00408 * 17 15 13 21 21 C 1.47476 * 87.83628 * 27.01107 * 8 7 3 22 22 H 1.09001 * 109.47846 * 186.05805 * 1 2 3 23 23 H 1.09004 * 109.46668 * 306.06276 * 1 2 3 24 24 H 1.09003 * 109.46882 * 66.05251 * 1 2 3 25 25 H 1.09005 * 109.47014 * 239.99474 * 2 1 3 26 26 H 1.09003 * 109.46703 * 120.00510 * 2 1 3 27 27 H 0.96703 * 117.00321 * 180.02562 * 6 4 3 28 28 H 1.09003 * 113.47619 * 105.56125 * 7 3 2 29 29 H 1.08995 * 113.47844 * 335.09829 * 7 3 2 30 30 H 1.09005 * 109.47198 * 59.99904 * 11 9 8 31 31 H 1.09005 * 109.47394 * 179.97438 * 11 9 8 32 32 H 1.09001 * 109.47495 * 300.00603 * 11 9 8 33 33 H 1.09001 * 109.46941 * 305.00050 * 12 9 8 34 34 H 1.08998 * 109.47431 * 184.99769 * 12 9 8 35 35 H 0.97001 * 120.00238 * 179.97438 * 16 15 13 36 36 H 1.08996 * 113.47666 * 87.75646 * 21 8 7 37 37 H 1.09000 * 113.47907 * 218.22826 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.7446 2.1813 1.2798 5 8 1.2861 3.2985 1.2403 6 8 1.9906 1.5983 2.4635 7 6 1.6997 2.2295 -1.2732 8 7 3.0514 2.8157 -1.2082 9 6 3.6583 2.8887 -2.5439 10 1 3.7321 1.8860 -2.9648 11 6 2.7889 3.7603 -3.4522 12 6 5.0567 3.5001 -2.4359 13 6 5.9478 2.5792 -1.6429 14 1 5.5560 1.6504 -1.2550 15 6 7.2634 2.9217 -1.4134 16 7 7.7406 4.0523 -1.8860 17 14 8.3681 1.7797 -0.4309 18 1 7.5963 0.5811 -0.0152 19 1 9.5186 1.3603 -1.2709 20 1 8.8677 2.4898 0.7740 21 6 3.4842 1.5985 -0.4968 22 1 -0.3635 -1.0219 0.1085 23 1 -0.3633 0.6050 0.8308 24 1 -0.3633 0.4171 -0.9392 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.7845 2.1113 3.2569 28 1 0.9026 2.9596 -1.1323 29 1 1.5426 1.5962 -2.1463 30 1 2.7151 4.7631 -3.0313 31 1 3.2395 3.8149 -4.4432 32 1 1.7928 3.3245 -3.5290 33 1 4.9934 4.4655 -1.9339 34 1 5.4718 3.6364 -3.4345 35 1 8.6662 4.2935 -1.7243 36 1 3.8034 0.7967 -1.1626 37 1 4.1995 1.7936 0.3022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722848266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:37 Heat of formation + Delta-G solvation = -67.596766 kcal Electronic energy + Delta-G solvation = -18367.385584 eV Core-core repulsion = 15531.514448 eV Total energy + Delta-G solvation = -2835.871136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.07161 -38.87186 -35.82533 -34.79822 -32.77988 -31.54090 -27.85151 -27.10577 -25.21069 -23.63007 -23.11827 -22.19144 -19.40079 -19.11416 -17.56491 -16.57547 -15.99568 -15.58844 -15.07023 -14.63314 -14.41755 -13.88970 -13.80920 -13.09882 -12.98308 -12.37235 -12.24386 -12.20208 -11.69788 -11.60283 -11.40889 -11.30816 -11.14935 -11.11233 -10.76376 -10.49395 -10.44329 -10.22251 -10.07370 -9.98055 -9.13025 -8.90993 -8.33656 -8.12125 -5.96325 -3.97232 2.46861 3.17243 3.31358 3.39266 3.40957 4.34312 4.47383 4.55947 4.81589 5.11770 5.29252 5.40808 5.42304 5.47634 5.65079 5.70271 5.84412 5.84782 5.91611 5.96962 6.04332 6.13998 6.17699 6.26247 6.41478 6.44016 6.64336 6.70138 6.87869 7.16768 7.50887 7.69416 8.01048 8.06113 8.16041 8.44215 9.07049 9.65226 11.15422 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.007958 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.634727 B = 3517.604931 C = 4080.289867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C -0.103 4.103 4 C 0.514 3.486 5 O -0.501 6.501 6 O -0.517 6.517 7 C 0.020 3.980 8 N -0.445 5.445 9 C 0.051 3.949 10 H 0.037 0.963 11 C -0.143 4.143 12 C 0.032 3.968 13 C -0.516 4.516 14 H 0.060 0.940 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.885 3.115 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.046 3.954 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.405 0.595 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.026 0.974 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.083 0.917 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.212 -8.055 3.661 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.105 4.105 4 C 0.356 3.644 5 O -0.388 6.388 6 O -0.328 6.328 7 C -0.109 4.109 8 N -0.168 5.168 9 C -0.058 4.058 10 H 0.055 0.945 11 C -0.201 4.201 12 C -0.005 4.005 13 C -0.555 4.555 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.713 3.287 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.083 4.083 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.263 0.737 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.951 -7.163 3.521 15.214 hybrid contribution 0.620 -0.913 0.634 1.273 sum -12.331 -8.076 4.156 15.315 Atomic orbital electron populations 1.21759 0.95494 1.01611 1.01943 1.21446 0.96048 0.93173 1.03507 1.21949 1.02096 0.95910 0.90542 1.22371 0.73380 0.84302 0.84395 1.90693 1.40997 1.19539 1.87532 1.84516 1.80256 1.51240 1.16820 1.23774 0.96808 0.96822 0.93500 1.69112 1.00791 1.30723 1.16164 1.22398 0.97912 0.97888 0.87579 0.94475 1.21858 0.98162 1.00788 0.99286 1.19098 0.87580 0.96770 0.97063 1.21387 0.95138 1.05434 1.33509 0.92170 1.24987 0.98189 0.95148 0.96035 1.69972 1.15042 1.22452 1.45960 0.86645 0.80910 0.81047 0.80056 1.19723 1.21154 1.21094 1.23805 0.91751 0.93566 0.99171 0.92374 0.93161 0.92390 0.90566 0.90453 0.73654 0.89326 0.90856 0.92280 0.92597 0.94151 0.95574 0.96253 0.93170 0.89876 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.64 37.16 0.36 -1.16 16 2 C -0.10 -1.20 5.35 -26.74 -0.14 -1.34 16 3 C -0.10 -1.55 1.01 -155.13 -0.16 -1.70 16 4 C 0.51 8.18 6.62 36.00 0.24 8.42 16 5 O -0.50 -9.45 16.74 -18.75 -0.31 -9.77 16 6 O -0.52 -6.59 13.09 -39.25 -0.51 -7.10 16 7 C 0.02 0.32 4.80 -7.56 -0.04 0.28 16 8 N -0.45 -8.83 6.01 -236.59 -1.42 -10.26 16 9 C 0.05 1.04 1.97 -67.72 -0.13 0.91 16 10 H 0.04 0.75 7.52 -51.93 -0.39 0.36 16 11 C -0.14 -2.54 9.09 37.15 0.34 -2.21 16 12 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 13 C -0.52 -14.16 8.27 -34.44 -0.28 -14.45 16 14 H 0.06 1.55 4.87 -52.49 -0.26 1.30 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.05 0.84 4.45 -7.55 -0.03 0.81 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.54 7.51 -51.93 -0.39 0.15 16 24 H 0.06 0.57 7.84 -51.93 -0.41 0.16 16 25 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 26 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 27 H 0.41 3.39 9.10 45.56 0.41 3.80 16 28 H 0.09 1.45 7.52 -51.93 -0.39 1.06 16 29 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.61 7.03 -51.93 -0.37 0.25 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.08 1.46 6.79 -51.93 -0.35 1.10 16 37 H 0.09 1.89 7.73 -51.93 -0.40 1.49 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -32.64 299.81 -7.11 -39.75 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.01 Total: 0.86 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.08 Total: -8.20 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.69 Total: -36.57 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.83 Total: -16.87 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.64 -7.11 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722848266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.846 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds