Wall clock time and date at job start Mon Mar 30 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47540 * 2 1 4 4 C 1.50697 * 113.38254 * 67.69974 * 3 2 1 5 5 O 1.20829 * 120.00156 * 226.53839 * 4 3 2 6 6 O 1.34228 * 120.00269 * 46.53237 * 4 3 2 7 7 C 1.53507 * 114.17207 * 294.61502 * 3 2 1 8 8 N 1.47476 * 87.93530 * 220.32931 * 7 3 2 9 9 C 1.46900 * 110.99967 * 138.70744 * 8 7 3 10 10 H 1.08996 * 109.46819 * 299.99633 * 9 8 7 11 11 C 1.52988 * 109.47444 * 59.99825 * 9 8 7 12 12 C 1.53001 * 109.47087 * 180.02562 * 9 8 7 13 13 C 1.50697 * 109.47410 * 64.99365 * 12 9 8 14 14 H 1.08001 * 120.00016 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00172 * 179.97438 * 13 12 9 16 16 N 1.31512 * 119.99979 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00023 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47121 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47418 * 120.00417 * 17 15 13 20 20 H 1.48512 * 109.47333 * 240.00408 * 17 15 13 21 21 C 1.47476 * 87.83628 * 27.01107 * 8 7 3 22 22 H 1.09001 * 109.47846 * 186.05805 * 1 2 3 23 23 H 1.09004 * 109.46668 * 306.06276 * 1 2 3 24 24 H 1.09003 * 109.46882 * 66.05251 * 1 2 3 25 25 H 1.09005 * 109.47014 * 239.99474 * 2 1 3 26 26 H 1.09003 * 109.46703 * 120.00510 * 2 1 3 27 27 H 0.96703 * 117.00321 * 180.02562 * 6 4 3 28 28 H 1.09003 * 113.47619 * 105.56125 * 7 3 2 29 29 H 1.08995 * 113.47844 * 335.09829 * 7 3 2 30 30 H 1.09005 * 109.47198 * 59.99904 * 11 9 8 31 31 H 1.09005 * 109.47394 * 179.97438 * 11 9 8 32 32 H 1.09001 * 109.47495 * 300.00603 * 11 9 8 33 33 H 1.09001 * 109.46941 * 305.00050 * 12 9 8 34 34 H 1.08998 * 109.47431 * 184.99769 * 12 9 8 35 35 H 0.97001 * 120.00238 * 179.97438 * 16 15 13 36 36 H 1.08996 * 113.47666 * 87.75646 * 21 8 7 37 37 H 1.09000 * 113.47907 * 218.22826 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.7446 2.1813 1.2798 5 8 1.2861 3.2985 1.2403 6 8 1.9906 1.5983 2.4635 7 6 1.6997 2.2295 -1.2732 8 7 3.0514 2.8157 -1.2082 9 6 3.6583 2.8887 -2.5439 10 1 3.7321 1.8860 -2.9648 11 6 2.7889 3.7603 -3.4522 12 6 5.0567 3.5001 -2.4359 13 6 5.9478 2.5792 -1.6429 14 1 5.5560 1.6504 -1.2550 15 6 7.2634 2.9217 -1.4134 16 7 7.7406 4.0523 -1.8860 17 14 8.3681 1.7797 -0.4309 18 1 7.5963 0.5811 -0.0152 19 1 9.5186 1.3603 -1.2709 20 1 8.8677 2.4898 0.7740 21 6 3.4842 1.5985 -0.4968 22 1 -0.3635 -1.0219 0.1085 23 1 -0.3633 0.6050 0.8308 24 1 -0.3633 0.4171 -0.9392 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.7845 2.1113 3.2569 28 1 0.9026 2.9596 -1.1323 29 1 1.5426 1.5962 -2.1463 30 1 2.7151 4.7631 -3.0313 31 1 3.2395 3.8149 -4.4432 32 1 1.7928 3.3245 -3.5290 33 1 4.9934 4.4655 -1.9339 34 1 5.4718 3.6364 -3.4345 35 1 8.6662 4.2935 -1.7243 36 1 3.8034 0.7967 -1.1626 37 1 4.1995 1.7936 0.3022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722848266.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:37 Heat of formation + Delta-G solvation = -91.965921 kcal Electronic energy + Delta-G solvation = -18368.442309 eV Core-core repulsion = 15531.514448 eV Total energy + Delta-G solvation = -2836.927862 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.37052 -40.18059 -37.03383 -36.31137 -34.56560 -32.97933 -29.72794 -28.32061 -26.67596 -25.28144 -24.40587 -23.56348 -20.94920 -20.39111 -18.79754 -18.47013 -17.37425 -16.98922 -16.57181 -16.41087 -15.59451 -15.37849 -15.04838 -14.44932 -14.16903 -13.93297 -13.72301 -13.45162 -13.24455 -13.14337 -12.92286 -12.71454 -12.58757 -12.49679 -12.30317 -12.18912 -11.97998 -11.67511 -11.41951 -11.26519 -10.95400 -10.84897 -10.53468 -9.59539 -8.14650 -6.22445 1.21711 1.38998 1.40072 1.51607 2.07741 2.42562 3.10066 3.16974 3.28257 3.67315 4.05123 4.21655 4.27674 4.35358 4.42317 4.48669 4.55077 4.64448 4.67595 4.81279 4.87767 4.92886 5.02641 5.13892 5.16271 5.23740 5.28854 5.42041 5.50536 5.54880 5.63453 5.65180 5.88964 6.26645 6.37539 6.92313 7.05085 7.44836 8.98378 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.007958 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.634727 B = 3517.604931 C = 4080.289867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.089 4.089 4 C 0.513 3.487 5 O -0.538 6.538 6 O -0.508 6.508 7 C 0.029 3.971 8 N -0.482 5.482 9 C 0.060 3.940 10 H 0.048 0.952 11 C -0.137 4.137 12 C 0.037 3.963 13 C -0.522 4.522 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.940 5.940 17 Si 0.955 3.045 18 H -0.253 1.253 19 H -0.281 1.281 20 H -0.287 1.287 21 C 0.041 3.959 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.425 0.575 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.073 0.927 33 H -0.017 1.017 34 H -0.006 1.006 35 H 0.259 0.741 36 H 0.093 0.907 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.545 -10.703 4.109 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.091 4.091 4 C 0.356 3.644 5 O -0.427 6.427 6 O -0.321 6.321 7 C -0.100 4.100 8 N -0.205 5.205 9 C -0.049 4.049 10 H 0.066 0.934 11 C -0.194 4.194 12 C -0.001 4.001 13 C -0.560 4.560 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.581 5.581 17 Si 0.780 3.220 18 H -0.176 1.176 19 H -0.207 1.207 20 H -0.214 1.214 21 C -0.088 4.088 22 H 0.097 0.903 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.286 0.714 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.001 0.999 34 H 0.012 0.988 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.304 -9.839 3.995 17.814 hybrid contribution 1.015 -0.050 0.548 1.155 sum -13.288 -9.889 4.543 17.176 Atomic orbital electron populations 1.21748 0.94149 1.02823 1.01808 1.21485 0.97094 0.90447 1.04584 1.21882 0.99406 0.97977 0.89824 1.22619 0.72531 0.83777 0.85458 1.90685 1.42849 1.21022 1.88171 1.84466 1.79519 1.51176 1.16948 1.23793 0.94208 0.96934 0.95058 1.69027 1.03273 1.32521 1.15651 1.22166 0.95321 0.98312 0.89093 0.93359 1.21796 0.99421 0.99550 0.98670 1.18963 0.91230 0.95060 0.94815 1.21858 0.95371 1.05993 1.32791 0.90484 1.25947 1.00145 0.96741 0.97347 1.70129 1.15454 1.24673 1.47846 0.85544 0.78878 0.79425 0.78155 1.17592 1.20674 1.21352 1.23758 0.93239 0.93246 0.98595 0.90288 0.94141 0.91952 0.89050 0.89880 0.71382 0.89877 0.88065 0.93928 0.92029 0.90855 0.99890 0.98770 0.93241 0.88907 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.64 71.98 0.69 -1.75 16 2 C -0.10 -1.92 5.35 30.59 0.16 -1.76 16 3 C -0.09 -2.48 1.01 -52.59 -0.05 -2.53 16 4 C 0.51 15.64 6.62 71.24 0.47 16.11 16 5 O -0.54 -20.02 16.74 21.95 0.37 -19.66 16 6 O -0.51 -11.95 13.09 -51.40 -0.67 -12.63 16 7 C 0.03 0.84 4.80 83.57 0.40 1.24 16 8 N -0.48 -18.82 6.01 -902.45 -5.42 -24.24 16 9 C 0.06 2.43 1.97 44.91 0.09 2.52 16 10 H 0.05 1.86 7.52 -2.39 -0.02 1.84 16 11 C -0.14 -4.73 9.09 71.98 0.65 -4.07 16 12 C 0.04 1.96 4.65 29.85 0.14 2.10 16 13 C -0.52 -28.97 8.27 25.60 0.21 -28.76 16 14 H 0.08 3.92 4.87 -2.91 -0.01 3.91 16 15 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 16 N -0.94 -58.59 13.29 21.45 0.28 -58.31 16 17 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 18 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 C 0.04 1.43 4.45 83.57 0.37 1.80 16 22 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.04 0.75 7.51 -2.38 -0.02 0.73 16 24 H 0.06 0.98 7.84 -2.39 -0.02 0.96 16 25 H 0.09 1.56 8.01 -2.38 -0.02 1.54 16 26 H 0.08 1.56 7.95 -2.39 -0.02 1.54 16 27 H 0.42 6.29 9.10 -74.06 -0.67 5.62 16 28 H 0.08 2.56 7.52 -2.39 -0.02 2.54 16 29 H 0.10 2.41 7.62 -2.39 -0.02 2.39 16 30 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.07 2.03 7.03 -2.39 -0.02 2.02 16 33 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 34 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 36 H 0.09 3.04 6.79 -2.39 -0.02 3.02 16 37 H 0.06 2.57 7.73 -2.39 -0.02 2.55 16 Total: -1.00 -72.53 299.81 0.57 -71.96 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.38 Total: 11.41 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 3.60 Total: -14.93 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -5.14 Total: -82.55 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.31 Total: -32.28 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.53 0.57 -71.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722848266.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.002 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds