Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 N 1.46896 * 109.47026 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99827 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46930 * 180.02562 * 12 11 10 14 14 H 1.08995 * 110.65943 * 59.30325 * 13 12 11 15 15 C 1.55125 * 110.74427 * 182.50228 * 13 12 11 16 16 C 1.54854 * 101.92690 * 157.55437 * 15 13 12 17 17 H 1.08995 * 113.06177 * 214.85416 * 16 15 13 18 18 C 1.54416 * 108.39663 * 87.88845 * 16 15 13 19 19 O 1.44367 * 104.95740 * 226.27707 * 18 16 15 20 20 C 1.44391 * 105.25940 * 40.67159 * 19 18 16 21 21 C 1.54375 * 104.87879 * 319.13847 * 20 19 18 22 22 H 1.08998 * 111.94610 * 263.28552 * 21 20 19 23 23 O 1.43891 * 108.85852 * 137.99420 * 21 20 19 24 24 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.00905 * 110.99560 * 56.05234 * 11 10 9 30 30 H 1.08999 * 109.47169 * 299.99891 * 12 11 10 31 31 H 1.08999 * 109.47003 * 60.00461 * 12 11 10 32 32 H 1.09008 * 110.94371 * 275.71432 * 15 13 12 33 33 H 1.09004 * 110.93911 * 39.36217 * 15 13 12 34 34 H 1.08993 * 110.34318 * 345.15382 * 18 16 15 35 35 H 1.09002 * 110.33981 * 107.41216 * 18 16 15 36 36 H 1.08997 * 110.36270 * 200.28655 * 20 19 18 37 37 H 1.09005 * 110.44882 * 78.02993 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 7 1.5106 -4.9343 -0.0075 12 6 2.4351 -6.0759 -0.0140 13 6 1.6349 -7.3800 -0.0138 14 1 0.9864 -7.4334 -0.8882 15 6 2.5831 -8.6064 0.0426 16 6 1.6524 -9.7046 0.6132 17 1 2.1698 -10.4044 1.2694 18 6 0.9215 -10.3845 -0.5650 19 8 -0.4609 -10.4555 -0.1549 20 6 -0.7302 -9.1937 0.4933 21 6 0.5319 -8.9021 1.3331 22 1 0.4106 -9.2109 2.3714 23 8 0.8653 -7.5084 1.2031 24 1 -0.4851 0.8401 0.0004 25 1 0.6283 -2.5592 0.8921 26 1 0.6202 -2.5546 -0.8878 27 1 2.8677 -3.6020 -0.9008 28 1 2.8758 -3.6067 0.8792 29 1 0.8704 -4.9825 -0.7860 30 1 3.0590 -6.0330 -0.9068 31 1 3.0670 -6.0368 0.8732 32 1 2.9350 -8.8732 -0.9540 33 1 3.4223 -8.4195 0.7127 34 1 1.0184 -9.7830 -1.4687 35 1 1.3195 -11.3857 -0.7306 36 1 -1.6042 -9.2780 1.1391 37 1 -0.8817 -8.4093 -0.2483 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724545335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -95.078742 kcal Electronic energy + Delta-G solvation = -17345.409572 eV Core-core repulsion = 14508.346729 eV Total energy + Delta-G solvation = -2837.062844 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95197 -37.43858 -35.69523 -33.06493 -32.60650 -30.82908 -28.99513 -27.91438 -25.26576 -23.64352 -22.76030 -21.15186 -20.70788 -20.35440 -17.03570 -16.57772 -16.26693 -15.89254 -15.69264 -15.25074 -14.74359 -14.42477 -14.06849 -13.48885 -13.32450 -13.04239 -12.49029 -12.29503 -12.10223 -11.76155 -11.44243 -11.17390 -11.16124 -11.00059 -10.95151 -10.88233 -10.48617 -10.29767 -9.97718 -9.56572 -9.34421 -9.12218 -8.33227 -7.77694 -5.97537 -4.00252 3.33223 3.39373 3.42841 3.47920 3.78947 4.25195 4.36907 4.46934 4.48397 4.58064 4.73777 4.88006 4.96452 5.09809 5.18504 5.32522 5.38123 5.38850 5.47663 5.59033 5.61920 5.68406 5.70289 5.86188 6.04315 6.34222 6.37361 6.43538 6.88000 7.00026 7.48833 7.74500 7.85128 7.97636 8.11389 8.45612 9.07089 9.63360 11.13936 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.057401 B = 0.003775 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.680529 B = 7414.551677 C = 7680.619146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.684 5.684 12 C 0.066 3.934 13 C 0.077 3.923 14 H 0.067 0.933 15 C -0.145 4.145 16 C -0.155 4.155 17 H 0.104 0.896 18 C 0.048 3.952 19 O -0.374 6.374 20 C 0.021 3.979 21 C 0.044 3.956 22 H 0.116 0.884 23 O -0.336 6.336 24 H 0.260 0.740 25 H 0.026 0.974 26 H 0.013 0.987 27 H 0.014 0.986 28 H 0.058 0.942 29 H 0.335 0.665 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -21.045 -0.749 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.315 5.315 12 C -0.064 4.064 13 C 0.020 3.980 14 H 0.085 0.915 15 C -0.183 4.183 16 C -0.174 4.174 17 H 0.123 0.877 18 C -0.028 4.028 19 O -0.293 6.293 20 C -0.056 4.056 21 C -0.015 4.015 22 H 0.133 0.867 23 O -0.254 6.254 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.152 0.848 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.115 -20.918 0.048 21.149 hybrid contribution 0.953 0.960 -1.059 1.717 sum 4.068 -19.958 -1.011 20.394 Atomic orbital electron populations 1.69978 1.06036 1.26573 1.50641 1.25004 0.94841 0.99209 0.95319 0.86583 0.79846 0.83474 0.78023 1.20731 1.21178 1.19881 1.21180 0.92966 0.91043 1.50882 0.92779 1.19069 0.94024 0.90370 0.97793 1.22168 0.96996 0.88470 0.98533 1.60510 1.19217 1.01805 1.49938 1.21941 0.94330 0.89238 1.00862 1.23317 0.91572 0.94788 0.88373 0.91497 1.23276 0.98666 0.94265 1.02086 1.23932 0.97125 0.98412 0.97964 0.87743 1.23540 0.81896 1.01482 0.95927 1.89125 1.27117 1.35823 1.77220 1.24049 0.98873 0.86489 0.96197 1.24230 0.93222 0.83333 1.00719 0.86670 1.89201 1.72609 1.21879 1.41728 0.92993 0.95541 0.96832 0.96777 0.92317 0.84817 0.94442 0.90509 0.89893 0.89829 0.91869 0.88934 0.88329 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.43 5.62 -3.83 -0.02 1.41 16 11 N -0.68 -12.63 6.46 -113.78 -0.74 -13.36 16 12 C 0.07 0.96 5.47 -3.82 -0.02 0.93 16 13 C 0.08 0.95 3.07 -25.60 -0.08 0.87 16 14 H 0.07 0.80 7.55 -51.93 -0.39 0.41 16 15 C -0.14 -1.32 5.84 -24.63 -0.14 -1.46 16 16 C -0.16 -1.37 4.31 -87.57 -0.38 -1.74 16 17 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 18 C 0.05 0.42 6.98 37.90 0.26 0.69 16 19 O -0.37 -4.27 11.65 -35.23 -0.41 -4.68 16 20 C 0.02 0.23 7.13 37.88 0.27 0.50 16 21 C 0.04 0.48 4.72 -24.68 -0.12 0.36 16 22 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 23 O -0.34 -4.81 10.82 -35.23 -0.38 -5.19 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.33 5.93 8.73 -39.29 -0.34 5.59 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.62 7.71 -51.92 -0.40 0.21 16 33 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.82 7.28 -51.93 -0.38 0.44 16 LS Contribution 300.35 15.07 4.53 4.53 Total: -1.00 -32.07 300.35 -8.16 -40.23 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.09 Total: -0.09 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -0.78 Total: -11.71 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.00 Total: -39.93 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.79 Total: -9.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.07 -8.16 -40.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724545335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.852 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds