Wall clock time and date at job start Mon Mar 30 2020 03:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 N 1.46896 * 109.47026 * 179.97438 * 10 9 7 12 12 C 1.46901 * 110.99827 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46930 * 180.02562 * 12 11 10 14 14 H 1.08995 * 110.65943 * 59.30325 * 13 12 11 15 15 C 1.55125 * 110.74427 * 182.50228 * 13 12 11 16 16 C 1.54854 * 101.92690 * 157.55437 * 15 13 12 17 17 H 1.08995 * 113.06177 * 214.85416 * 16 15 13 18 18 C 1.54416 * 108.39663 * 87.88845 * 16 15 13 19 19 O 1.44367 * 104.95740 * 226.27707 * 18 16 15 20 20 C 1.44391 * 105.25940 * 40.67159 * 19 18 16 21 21 C 1.54375 * 104.87879 * 319.13847 * 20 19 18 22 22 H 1.08998 * 111.94610 * 263.28552 * 21 20 19 23 23 O 1.43891 * 108.85852 * 137.99420 * 21 20 19 24 24 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.00905 * 110.99560 * 56.05234 * 11 10 9 30 30 H 1.08999 * 109.47169 * 299.99891 * 12 11 10 31 31 H 1.08999 * 109.47003 * 60.00461 * 12 11 10 32 32 H 1.09008 * 110.94371 * 275.71432 * 15 13 12 33 33 H 1.09004 * 110.93911 * 39.36217 * 15 13 12 34 34 H 1.08993 * 110.34318 * 345.15382 * 18 16 15 35 35 H 1.09002 * 110.33981 * 107.41216 * 18 16 15 36 36 H 1.08997 * 110.36270 * 200.28655 * 20 19 18 37 37 H 1.09005 * 110.44882 * 78.02993 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 7 1.5106 -4.9343 -0.0075 12 6 2.4351 -6.0759 -0.0140 13 6 1.6349 -7.3800 -0.0138 14 1 0.9864 -7.4334 -0.8882 15 6 2.5831 -8.6064 0.0426 16 6 1.6524 -9.7046 0.6132 17 1 2.1698 -10.4044 1.2694 18 6 0.9215 -10.3845 -0.5650 19 8 -0.4609 -10.4555 -0.1549 20 6 -0.7302 -9.1937 0.4933 21 6 0.5319 -8.9021 1.3331 22 1 0.4106 -9.2109 2.3714 23 8 0.8653 -7.5084 1.2031 24 1 -0.4851 0.8401 0.0004 25 1 0.6283 -2.5592 0.8921 26 1 0.6202 -2.5546 -0.8878 27 1 2.8677 -3.6020 -0.9008 28 1 2.8758 -3.6067 0.8792 29 1 0.8704 -4.9825 -0.7860 30 1 3.0590 -6.0330 -0.9068 31 1 3.0670 -6.0368 0.8732 32 1 2.9350 -8.8732 -0.9540 33 1 3.4223 -8.4195 0.7127 34 1 1.0184 -9.7830 -1.4687 35 1 1.3195 -11.3857 -0.7306 36 1 -1.6042 -9.2780 1.1391 37 1 -0.8817 -8.4093 -0.2483 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724545335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:34 Heat of formation + Delta-G solvation = -118.964974 kcal Electronic energy + Delta-G solvation = -17346.445357 eV Core-core repulsion = 14508.346729 eV Total energy + Delta-G solvation = -2838.098629 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.78476 -38.42422 -37.17618 -35.05685 -33.51543 -32.29515 -30.31589 -28.99700 -26.71833 -25.03219 -23.84571 -22.56757 -21.80149 -21.49202 -18.52727 -17.87683 -17.52804 -16.77847 -16.59391 -16.50491 -16.30959 -15.73783 -15.43208 -14.86756 -14.43150 -14.09754 -14.07667 -13.85966 -13.17756 -13.07773 -12.84684 -12.65335 -12.47592 -12.21852 -12.04300 -11.94113 -11.90852 -11.75831 -11.39729 -11.19423 -11.08767 -10.57044 -10.46342 -9.25357 -8.20511 -6.32675 1.40321 1.42484 1.53695 2.40503 2.64603 2.99563 3.12817 3.31372 3.47266 3.69790 3.75431 3.92564 4.03991 4.13601 4.14967 4.26208 4.43420 4.53676 4.56665 4.66282 4.67427 4.77798 4.81161 4.88495 4.90774 5.05232 5.05906 5.13896 5.43348 5.60935 5.65648 5.77567 5.99474 6.12897 6.27772 6.53183 6.84803 7.36863 8.91883 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.057401 B = 0.003775 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.680529 B = 7414.551677 C = 7680.619146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.085 3.915 11 N -0.697 5.697 12 C 0.067 3.933 13 C 0.075 3.925 14 H 0.067 0.933 15 C -0.135 4.135 16 C -0.145 4.145 17 H 0.125 0.875 18 C 0.044 3.956 19 O -0.391 6.391 20 C 0.021 3.979 21 C 0.036 3.964 22 H 0.125 0.875 23 O -0.371 6.371 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.337 0.663 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -21.921 -1.097 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.043 4.043 11 N -0.328 5.328 12 C -0.062 4.062 13 C 0.017 3.983 14 H 0.085 0.915 15 C -0.173 4.173 16 C -0.164 4.164 17 H 0.143 0.857 18 C -0.033 4.033 19 O -0.310 6.310 20 C -0.056 4.056 21 C -0.023 4.023 22 H 0.142 0.858 23 O -0.290 6.290 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.984 -21.823 -0.306 22.387 hybrid contribution 0.319 1.179 -0.946 1.545 sum 5.304 -20.645 -1.251 21.352 Atomic orbital electron populations 1.70121 1.07935 1.27846 1.51399 1.26016 0.95779 1.03522 0.94551 0.85381 0.78604 0.78084 0.78564 1.19574 1.20751 1.18631 1.21623 0.93596 0.92191 1.50999 0.91970 1.18928 0.94356 0.92488 0.94915 1.21770 0.95531 0.88260 0.98784 1.60403 1.20153 1.01852 1.50430 1.22029 0.94086 0.88589 1.01525 1.23348 0.92084 0.94953 0.87900 0.91499 1.23248 0.97980 0.92465 1.03612 1.23946 0.96285 0.98270 0.97914 0.85675 1.23748 0.80674 1.02934 0.95902 1.89109 1.28766 1.35739 1.77368 1.24004 0.99405 0.86174 0.95986 1.24415 0.94026 0.82256 1.01560 0.85768 1.89160 1.73197 1.24081 1.42531 0.92725 0.99123 0.99050 0.95837 0.92560 0.84578 0.92432 0.90931 0.87627 0.89317 0.91596 0.86701 0.87812 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.57 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.69 5.23 29.85 0.16 1.85 16 10 C 0.09 3.69 5.62 86.30 0.49 4.18 16 11 N -0.70 -25.86 6.46 -513.89 -3.32 -29.18 16 12 C 0.07 1.85 5.47 86.30 0.47 2.32 16 13 C 0.07 1.75 3.07 31.32 0.10 1.84 16 14 H 0.07 1.54 7.55 -2.39 -0.02 1.53 16 15 C -0.14 -2.09 5.84 31.96 0.19 -1.90 16 16 C -0.15 -2.18 4.31 -8.82 -0.04 -2.21 16 17 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 18 C 0.04 0.66 6.98 72.46 0.51 1.16 16 19 O -0.39 -8.39 11.65 -148.98 -1.74 -10.13 16 20 C 0.02 0.46 7.13 72.45 0.52 0.97 16 21 C 0.04 0.74 4.72 31.92 0.15 0.89 16 22 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 23 O -0.37 -10.47 10.82 -148.98 -1.61 -12.08 16 24 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.34 12.13 8.73 -89.69 -0.78 11.34 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 1.18 7.71 -2.38 -0.02 1.16 16 33 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 34 H 0.07 0.95 7.51 -2.39 -0.02 0.94 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 1.35 7.28 -2.38 -0.02 1.33 16 Total: -1.00 -69.68 300.35 -0.87 -70.55 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.26 Total: 13.97 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 3.23 Total: -22.06 kcal Atomic # 7 Polarization: -83.99 SS G_CDS: -3.04 Total: -87.03 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -3.35 Total: -22.21 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.68 -0.87 -70.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724545335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.411 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds