Wall clock time and date at job start Mon Mar 30 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48502 * 109.46828 * 269.99518 * 3 2 1 5 5 H 1.48499 * 109.47286 * 29.99735 * 3 2 1 6 6 H 1.48501 * 109.46948 * 149.99715 * 3 2 1 7 7 C 1.37872 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99977 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00461 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47376 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.46772 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99501 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46956 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.41729 * 307.30646 * 13 12 11 15 15 C 1.54427 * 110.37365 * 184.99626 * 13 12 11 16 16 C 1.54422 * 104.24457 * 216.91149 * 15 13 12 17 17 H 1.09000 * 113.19731 * 236.90372 * 16 15 13 18 18 C 1.54055 * 108.73772 * 110.13163 * 16 15 13 19 19 O 1.44355 * 106.38925 * 224.11384 * 18 16 15 20 20 C 1.42821 * 111.01401 * 17.29812 * 19 18 16 21 21 C 1.53646 * 108.35593 * 358.98729 * 20 19 18 22 22 H 1.09006 * 112.63117 * 222.44841 * 21 20 19 23 23 O 1.44196 * 109.27078 * 95.85128 * 21 20 19 24 24 H 0.96997 * 120.00130 * 0.02562 * 1 2 3 25 25 H 1.09011 * 109.46782 * 59.99926 * 9 7 2 26 26 H 1.08994 * 109.46854 * 300.00660 * 9 7 2 27 27 H 1.08997 * 109.46856 * 60.00724 * 10 9 7 28 28 H 1.08992 * 109.47228 * 300.00195 * 10 9 7 29 29 H 1.00897 * 110.99576 * 303.95267 * 11 10 9 30 30 H 1.08996 * 109.47712 * 60.00032 * 12 11 10 31 31 H 1.09001 * 109.47172 * 299.99746 * 12 11 10 32 32 H 1.09003 * 110.47506 * 335.60124 * 15 13 12 33 33 H 1.09002 * 110.47141 * 98.21808 * 15 13 12 34 34 H 1.09001 * 109.90491 * 342.93097 * 18 16 15 35 35 H 1.08991 * 109.90604 * 104.18841 * 18 16 15 36 36 H 1.09006 * 109.70415 * 239.24284 * 20 19 18 37 37 H 1.08994 * 109.65658 * 118.70220 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0023 11 7 5.4906 -2.6365 0.0035 12 6 6.0170 -4.0079 0.0040 13 6 7.5464 -3.9671 0.0046 14 1 7.9104 -3.3383 -0.8079 15 6 8.1224 -5.3945 -0.1209 16 6 9.3762 -5.3789 0.7803 17 1 10.2890 -5.6520 0.2508 18 6 9.1066 -6.2549 2.0185 19 8 9.6008 -5.5158 3.1558 20 6 9.7813 -4.1367 2.8312 21 6 9.4028 -3.9333 1.3560 22 1 10.1008 -3.2820 0.8299 23 8 8.0358 -3.4821 1.2733 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8912 26 1 3.8752 -0.6804 -0.8887 27 1 3.6587 -3.1509 -0.8875 28 1 3.6579 -3.1498 0.8924 29 1 5.8527 -2.1108 -0.7779 30 1 5.6683 -4.5314 -0.8862 31 1 5.6668 -4.5312 0.8938 32 1 7.4025 -6.1292 0.2399 33 1 8.3981 -5.6048 -1.1543 34 1 8.0354 -6.4255 2.1263 35 1 9.6286 -7.2066 1.9206 36 1 10.8234 -3.8562 2.9853 37 1 9.1386 -3.5240 3.4633 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724545337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:36 Heat of formation + Delta-G solvation = -93.278773 kcal Electronic energy + Delta-G solvation = -17352.027811 eV Core-core repulsion = 14515.043020 eV Total energy + Delta-G solvation = -2836.984791 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.80840 -37.54789 -35.81514 -33.08255 -32.70781 -31.13407 -29.51650 -28.27704 -25.44649 -23.26521 -22.45237 -21.33786 -21.01946 -20.20913 -17.48323 -16.76529 -16.40821 -16.21150 -15.27688 -15.05222 -14.93856 -14.36042 -14.08076 -13.70815 -13.26421 -12.99917 -12.91409 -12.47863 -12.28527 -11.87699 -11.66580 -11.40706 -11.30200 -11.12497 -10.98438 -10.92675 -10.05894 -9.90936 -9.82809 -9.72767 -9.67606 -9.20751 -8.51512 -7.91349 -6.02428 -4.00753 3.34001 3.41661 3.43596 3.48837 3.56985 4.05488 4.33417 4.47273 4.48737 4.53862 4.73183 4.83936 4.99268 5.05688 5.14633 5.30223 5.32396 5.37817 5.40600 5.48013 5.54830 5.62561 5.71166 5.73295 5.99647 6.20625 6.26933 6.68477 6.78528 6.82412 7.14398 7.39155 7.62488 7.77028 7.91596 8.55092 9.01432 9.60112 11.10931 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044173 B = 0.004097 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.725126 B = 6832.029675 C = 7040.965081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.688 5.688 12 C 0.064 3.936 13 C 0.080 3.920 14 H 0.069 0.931 15 C -0.144 4.144 16 C -0.155 4.155 17 H 0.104 0.896 18 C 0.063 3.937 19 O -0.385 6.385 20 C 0.059 3.941 21 C 0.041 3.959 22 H 0.095 0.905 23 O -0.339 6.339 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.008 0.992 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.333 0.667 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.814 -11.358 -0.444 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.319 5.319 12 C -0.065 4.065 13 C 0.022 3.978 14 H 0.087 0.913 15 C -0.183 4.183 16 C -0.174 4.174 17 H 0.122 0.878 18 C -0.013 4.013 19 O -0.304 6.304 20 C -0.018 4.018 21 C -0.018 4.018 22 H 0.112 0.888 23 O -0.258 6.258 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.027 0.973 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.595 -11.136 0.613 24.305 hybrid contribution 0.192 0.618 -1.415 1.555 sum 21.788 -10.518 -0.802 24.207 Atomic orbital electron populations 1.69916 1.06330 1.26919 1.51196 1.25004 0.94730 0.99223 0.94458 0.86747 0.80571 0.83406 0.78430 1.20417 1.21408 1.18697 1.21076 0.89398 0.94519 1.50986 0.91136 1.19546 0.96626 0.91825 0.96770 1.21965 0.83843 1.00158 0.99441 1.60539 1.09891 1.11842 1.49597 1.21990 0.91351 0.92090 1.01104 1.23081 0.95197 0.92560 0.86942 0.91339 1.23059 0.96312 0.98535 1.00365 1.23910 0.99686 0.96126 0.97679 0.87774 1.23476 0.99597 0.94844 0.83347 1.88358 1.87020 1.19503 1.35537 1.22962 1.01090 0.83435 0.94301 1.24246 0.87068 0.93921 0.96518 0.88751 1.89323 1.23326 1.76233 1.36941 0.92736 0.95559 0.97328 0.96090 0.91674 0.84947 0.94219 0.90326 0.89806 0.90185 0.91368 0.89983 0.90445 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.53 5.62 -3.82 -0.02 1.51 16 11 N -0.69 -11.99 6.50 -113.78 -0.74 -12.73 16 12 C 0.06 0.89 5.29 -3.83 -0.02 0.87 16 13 C 0.08 0.93 3.46 -25.98 -0.09 0.84 16 14 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 15 C -0.14 -1.24 6.15 -25.24 -0.16 -1.40 16 16 C -0.16 -1.30 4.24 -87.93 -0.37 -1.67 16 17 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 18 C 0.06 0.60 7.40 37.71 0.28 0.88 16 19 O -0.38 -4.62 11.31 -35.23 -0.40 -5.02 16 20 C 0.06 0.61 7.53 37.49 0.28 0.90 16 21 C 0.04 0.42 4.35 -25.00 -0.11 0.31 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 O -0.34 -4.69 10.89 -35.23 -0.38 -5.07 16 24 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.03 0.67 7.20 -51.92 -0.37 0.30 16 26 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.33 5.39 8.73 -39.29 -0.34 5.05 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 0.71 6.93 -51.93 -0.36 0.35 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.68 7.22 -51.93 -0.37 0.31 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.97 8.02 -51.93 -0.42 0.56 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -32.93 297.74 -7.76 -40.69 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.07 Total: -0.59 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -0.76 Total: -11.77 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.03 Total: -40.29 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.78 Total: -10.09 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.93 -7.76 -40.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724545337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.589 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds