Wall clock time and date at job start Mon Mar 30 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48502 * 109.46828 * 269.99518 * 3 2 1 5 5 H 1.48499 * 109.47286 * 29.99735 * 3 2 1 6 6 H 1.48501 * 109.46948 * 149.99715 * 3 2 1 7 7 C 1.37872 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99977 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00461 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47376 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.46772 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99501 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46956 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.41729 * 307.30646 * 13 12 11 15 15 C 1.54427 * 110.37365 * 184.99626 * 13 12 11 16 16 C 1.54422 * 104.24457 * 216.91149 * 15 13 12 17 17 H 1.09000 * 113.19731 * 236.90372 * 16 15 13 18 18 C 1.54055 * 108.73772 * 110.13163 * 16 15 13 19 19 O 1.44355 * 106.38925 * 224.11384 * 18 16 15 20 20 C 1.42821 * 111.01401 * 17.29812 * 19 18 16 21 21 C 1.53646 * 108.35593 * 358.98729 * 20 19 18 22 22 H 1.09006 * 112.63117 * 222.44841 * 21 20 19 23 23 O 1.44196 * 109.27078 * 95.85128 * 21 20 19 24 24 H 0.96997 * 120.00130 * 0.02562 * 1 2 3 25 25 H 1.09011 * 109.46782 * 59.99926 * 9 7 2 26 26 H 1.08994 * 109.46854 * 300.00660 * 9 7 2 27 27 H 1.08997 * 109.46856 * 60.00724 * 10 9 7 28 28 H 1.08992 * 109.47228 * 300.00195 * 10 9 7 29 29 H 1.00897 * 110.99576 * 303.95267 * 11 10 9 30 30 H 1.08996 * 109.47712 * 60.00032 * 12 11 10 31 31 H 1.09001 * 109.47172 * 299.99746 * 12 11 10 32 32 H 1.09003 * 110.47506 * 335.60124 * 15 13 12 33 33 H 1.09002 * 110.47141 * 98.21808 * 15 13 12 34 34 H 1.09001 * 109.90491 * 342.93097 * 18 16 15 35 35 H 1.08991 * 109.90604 * 104.18841 * 18 16 15 36 36 H 1.09006 * 109.70415 * 239.24284 * 20 19 18 37 37 H 1.08994 * 109.65658 * 118.70220 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0023 11 7 5.4906 -2.6365 0.0035 12 6 6.0170 -4.0079 0.0040 13 6 7.5464 -3.9671 0.0046 14 1 7.9104 -3.3383 -0.8079 15 6 8.1224 -5.3945 -0.1209 16 6 9.3762 -5.3789 0.7803 17 1 10.2890 -5.6520 0.2508 18 6 9.1066 -6.2549 2.0185 19 8 9.6008 -5.5158 3.1558 20 6 9.7813 -4.1367 2.8312 21 6 9.4028 -3.9333 1.3560 22 1 10.1008 -3.2820 0.8299 23 8 8.0358 -3.4821 1.2733 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8912 26 1 3.8752 -0.6804 -0.8887 27 1 3.6587 -3.1509 -0.8875 28 1 3.6579 -3.1498 0.8924 29 1 5.8527 -2.1108 -0.7779 30 1 5.6683 -4.5314 -0.8862 31 1 5.6668 -4.5312 0.8938 32 1 7.4025 -6.1292 0.2399 33 1 8.3981 -5.6048 -1.1543 34 1 8.0354 -6.4255 2.1263 35 1 9.6286 -7.2066 1.9206 36 1 10.8234 -3.8562 2.9853 37 1 9.1386 -3.5240 3.4633 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724545337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:36 Heat of formation + Delta-G solvation = -118.677852 kcal Electronic energy + Delta-G solvation = -17353.129198 eV Core-core repulsion = 14515.043020 eV Total energy + Delta-G solvation = -2838.086178 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.59322 -38.50404 -37.22115 -35.02255 -33.62684 -32.62163 -30.76661 -29.29342 -26.83301 -24.78399 -23.24817 -22.57360 -21.90513 -21.67338 -18.98101 -18.19054 -17.40095 -17.13749 -16.47001 -16.19262 -15.99406 -15.78071 -15.42009 -15.09287 -14.68354 -14.33301 -13.96317 -13.90325 -13.54063 -13.10635 -12.88851 -12.66789 -12.40144 -12.26673 -12.05875 -11.92462 -11.77483 -11.64166 -11.46704 -11.41985 -10.78063 -10.73822 -10.51437 -9.30838 -8.31345 -6.36196 1.35323 1.38810 1.52123 2.36147 2.65856 2.84074 3.04166 3.17925 3.40606 3.66395 3.83623 4.01642 4.04232 4.15650 4.27814 4.33879 4.38568 4.44131 4.53018 4.57951 4.69364 4.74567 4.81175 4.82937 4.93050 4.95308 5.01328 5.12335 5.26986 5.45827 5.62119 5.89321 6.03467 6.11913 6.23993 6.53589 6.72360 7.28966 8.85389 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044173 B = 0.004097 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.725126 B = 6832.029675 C = 7040.965081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.004 4.004 10 C 0.088 3.912 11 N -0.695 5.695 12 C 0.064 3.936 13 C 0.079 3.921 14 H 0.081 0.919 15 C -0.138 4.138 16 C -0.143 4.143 17 H 0.134 0.866 18 C 0.055 3.945 19 O -0.409 6.409 20 C 0.054 3.946 21 C 0.035 3.965 22 H 0.117 0.883 23 O -0.378 6.378 24 H 0.267 0.733 25 H 0.018 0.982 26 H 0.021 0.979 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.343 0.657 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.657 -11.207 -1.625 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.042 4.042 10 C -0.041 4.041 11 N -0.326 5.326 12 C -0.065 4.065 13 C 0.022 3.978 14 H 0.098 0.902 15 C -0.176 4.176 16 C -0.162 4.162 17 H 0.152 0.848 18 C -0.020 4.020 19 O -0.330 6.330 20 C -0.022 4.022 21 C -0.023 4.023 22 H 0.134 0.866 23 O -0.297 6.297 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.161 0.839 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.460 -11.007 -0.577 26.828 hybrid contribution -0.739 0.482 -1.006 1.338 sum 23.721 -10.525 -1.583 25.999 Atomic orbital electron populations 1.70063 1.08285 1.28289 1.52461 1.26001 0.95634 1.03569 0.93890 0.85592 0.79302 0.78005 0.79338 1.18715 1.20866 1.17512 1.21413 0.91911 0.93275 1.50841 0.94974 1.19429 0.93579 0.94466 0.96705 1.21614 0.86254 0.97410 0.98841 1.60416 1.07453 1.14411 1.50357 1.22062 0.93317 0.89985 1.01169 1.23133 0.93267 0.94779 0.86660 0.90154 1.23042 0.96202 0.96313 1.02033 1.23940 1.00750 0.94428 0.97045 0.84759 1.23658 0.99124 0.95899 0.83354 1.88328 1.87159 1.20273 1.37192 1.23061 1.02025 0.82670 0.94470 1.24486 0.85852 0.95453 0.96499 0.86574 1.89287 1.25440 1.77006 1.38017 0.92371 0.96354 0.96064 0.95967 0.93175 0.83873 0.92409 0.91895 0.90010 0.87500 0.92797 0.87756 0.88021 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 2 C 0.01 0.36 5.47 84.65 0.46 0.82 16 3 Si 0.95 45.53 27.47 68.60 1.88 47.41 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 7 C -0.54 -31.93 9.66 25.60 0.25 -31.68 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C 0.00 -0.20 4.30 29.85 0.13 -0.07 16 10 C 0.09 3.63 5.62 86.30 0.49 4.11 16 11 N -0.69 -23.44 6.50 -513.90 -3.34 -26.78 16 12 C 0.06 1.69 5.29 86.30 0.46 2.15 16 13 C 0.08 1.67 3.46 31.08 0.11 1.78 16 14 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 15 C -0.14 -1.95 6.15 31.56 0.19 -1.75 16 16 C -0.14 -1.94 4.24 -9.05 -0.04 -1.98 16 17 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 18 C 0.06 0.95 7.40 72.34 0.54 1.48 16 19 O -0.41 -9.46 11.31 -148.98 -1.69 -11.14 16 20 C 0.05 1.07 7.53 72.20 0.54 1.62 16 21 C 0.03 0.63 4.35 31.72 0.14 0.77 16 22 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 23 O -0.38 -9.98 10.89 -148.98 -1.62 -11.60 16 24 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 25 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 26 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 27 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.34 10.41 8.73 -89.70 -0.78 9.63 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 1.21 6.93 -2.39 -0.02 1.19 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.05 7.22 -2.39 -0.02 1.03 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.06 1.46 8.02 -2.39 -0.02 1.44 16 Total: -1.00 -72.39 297.74 -1.00 -73.39 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.21 Total: 11.88 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 3.26 Total: -22.75 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -3.04 Total: -87.18 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -3.31 Total: -22.74 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.41 kcal Total: -72.39 -1.00 -73.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724545337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.286 kcal (2) G-P(sol) polarization free energy of solvation -72.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds