Wall clock time and date at job start Mon Mar 30 2020 03:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48495 * 109.47069 * 240.00393 * 3 2 1 5 5 H 1.48500 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00096 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.04716 * 304.99529 * 13 12 11 15 15 C 1.55992 * 110.06293 * 183.47737 * 13 12 11 16 16 C 1.51449 * 102.13660 * 246.46126 * 15 13 12 17 17 H 1.09000 * 111.46665 * 84.70117 * 16 15 13 18 18 C 1.50984 * 123.49980 * 221.04196 * 16 15 13 19 19 O 1.45346 * 105.47545 * 139.91158 * 18 16 15 20 20 C 1.45958 * 109.10510 * 353.05821 * 19 18 16 21 21 C 1.50133 * 102.77509 * 335.18793 * 20 19 18 22 22 H 1.08999 * 108.54880 * 293.91351 * 21 20 19 23 23 O 1.39050 * 130.38006 * 157.32359 * 21 20 19 24 24 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 26 26 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 27 27 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 28 28 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 29 29 H 1.00902 * 111.00190 * 56.03777 * 11 10 9 30 30 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 31 31 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 32 32 H 1.08998 * 110.86942 * 4.61934 * 15 13 12 33 33 H 1.09001 * 110.87173 * 128.30155 * 15 13 12 34 34 H 1.09000 * 110.24555 * 20.91014 * 18 16 15 35 35 H 1.08997 * 110.31583 * 258.94941 * 18 16 15 36 36 H 1.08995 * 110.74889 * 216.86843 * 20 19 18 37 37 H 1.08995 * 110.91035 * 93.57968 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0006 14 1 0.9392 -7.3913 0.8380 15 6 2.6023 -8.6009 0.0889 16 6 2.4073 -9.2610 -1.2601 17 1 3.0401 -8.8059 -2.0221 18 6 2.3177 -10.7560 -1.4511 19 8 1.2769 -10.9583 -2.4453 20 6 0.6336 -9.6795 -2.7304 21 6 0.8842 -8.8947 -1.4753 22 1 0.3389 -9.3654 -0.6573 23 8 0.9053 -7.5210 -1.2609 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.8746 -4.9841 -0.7827 30 1 3.0640 -6.0348 -0.8901 31 1 3.0628 -6.0349 0.8899 32 1 3.6336 -8.2711 0.2144 33 1 2.3071 -9.2717 0.8957 34 1 2.0433 -11.2403 -0.5139 35 1 3.2674 -11.1488 -1.8141 36 1 -0.4355 -9.8133 -2.8952 37 1 1.0973 -9.1936 -3.5887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724620699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:38 Heat of formation + Delta-G solvation = -73.810212 kcal Electronic energy + Delta-G solvation = -17222.740781 eV Core-core repulsion = 14386.600209 eV Total energy + Delta-G solvation = -2836.140571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.33264 -37.93418 -35.76338 -33.14467 -32.70868 -30.89945 -29.28187 -28.29052 -25.49143 -23.41724 -22.03477 -21.65178 -20.96745 -20.32491 -17.63950 -16.58675 -16.28583 -16.19056 -15.37311 -15.14723 -14.86422 -14.43988 -14.26430 -13.73321 -13.27278 -13.04175 -12.70321 -12.37556 -12.17959 -12.02074 -11.91314 -11.21371 -11.05826 -11.02731 -10.88738 -10.63072 -10.51848 -10.01068 -9.98276 -9.71383 -9.34879 -9.14303 -8.33725 -7.83422 -5.97985 -4.00869 2.89778 3.34352 3.38609 3.40894 3.42552 4.05493 4.32891 4.35538 4.47129 4.59425 4.81533 4.86924 5.01255 5.13999 5.14697 5.26585 5.34979 5.37677 5.39162 5.47209 5.50071 5.65613 5.77933 5.89029 6.00566 6.24184 6.33278 6.41527 6.72277 6.98463 7.46743 7.74882 7.83558 7.97838 8.10207 8.44871 9.06177 9.62682 11.13444 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.061966 B = 0.003588 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.750125 B = 7801.167099 C = 7995.750290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.691 5.691 12 C 0.062 3.938 13 C 0.079 3.921 14 H 0.090 0.910 15 C -0.129 4.129 16 C -0.188 4.188 17 H 0.096 0.904 18 C 0.066 3.934 19 O -0.381 6.381 20 C 0.075 3.925 21 C 0.034 3.966 22 H 0.061 0.939 23 O -0.337 6.337 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.025 0.975 27 H 0.058 0.942 28 H 0.015 0.985 29 H 0.344 0.656 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 -21.000 -1.839 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.322 5.322 12 C -0.068 4.068 13 C 0.022 3.978 14 H 0.108 0.892 15 C -0.167 4.167 16 C -0.207 4.207 17 H 0.115 0.885 18 C -0.010 4.010 19 O -0.301 6.301 20 C -0.001 4.001 21 C -0.026 4.026 22 H 0.079 0.921 23 O -0.256 6.256 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.162 0.838 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.059 -20.902 -1.365 21.336 hybrid contribution 0.981 1.084 -0.660 1.604 sum 5.040 -19.818 -2.025 20.548 Atomic orbital electron populations 1.69960 1.06038 1.26709 1.50505 1.25005 0.94846 0.99207 0.95295 0.86642 0.79558 0.83108 0.78573 1.20292 1.21256 1.20230 1.21143 0.92929 0.91046 1.51073 0.92825 1.19064 0.94022 0.90362 0.97786 1.22166 0.97028 0.88504 0.98555 1.60605 1.19536 1.01852 1.50237 1.22069 0.94383 0.89473 1.00830 1.24014 0.92720 0.94841 0.86249 0.89248 1.22339 1.01270 0.96944 0.96123 1.23624 1.00237 0.96702 1.00103 0.88542 1.22330 0.91770 0.94184 0.92757 1.89348 1.50857 1.28900 1.60991 1.22270 0.99067 0.83679 0.95094 1.22957 0.95162 0.85256 0.99235 0.92100 1.88470 1.76013 1.19606 1.41499 0.92917 0.96736 0.95637 0.92391 0.96665 0.83815 0.95082 0.89925 0.89570 0.90046 0.91003 0.90150 0.88214 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 11 N -0.69 -12.76 6.50 -113.78 -0.74 -13.50 16 12 C 0.06 0.89 5.25 -3.83 -0.02 0.87 16 13 C 0.08 0.96 3.56 -25.13 -0.09 0.87 16 14 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 15 C -0.13 -1.15 6.37 -25.91 -0.17 -1.32 16 16 C -0.19 -1.76 3.38 -89.60 -0.30 -2.06 16 17 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 18 C 0.07 0.56 7.55 36.14 0.27 0.83 16 19 O -0.38 -4.06 11.58 -35.23 -0.41 -4.47 16 20 C 0.08 0.73 7.63 35.73 0.27 1.01 16 21 C 0.03 0.37 3.74 -25.34 -0.09 0.28 16 22 H 0.06 0.65 7.80 -51.93 -0.40 0.24 16 23 O -0.34 -4.64 10.82 -30.09 -0.33 -4.96 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.34 6.51 8.38 -39.29 -0.33 6.18 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 0.70 7.76 -51.93 -0.40 0.30 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 301.79 15.07 4.55 4.55 Total: -1.00 -31.39 301.79 -8.09 -39.48 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.17 Total: 0.04 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -0.71 Total: -11.42 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.00 Total: -40.05 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.73 Total: -9.43 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.39 -8.09 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.329 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds