Wall clock time and date at job start Mon Mar 30 2020 03:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48495 * 109.47069 * 240.00393 * 3 2 1 5 5 H 1.48500 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47146 * 120.00096 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.04716 * 304.99529 * 13 12 11 15 15 C 1.55992 * 110.06293 * 183.47737 * 13 12 11 16 16 C 1.51449 * 102.13660 * 246.46126 * 15 13 12 17 17 H 1.09000 * 111.46665 * 84.70117 * 16 15 13 18 18 C 1.50984 * 123.49980 * 221.04196 * 16 15 13 19 19 O 1.45346 * 105.47545 * 139.91158 * 18 16 15 20 20 C 1.45958 * 109.10510 * 353.05821 * 19 18 16 21 21 C 1.50133 * 102.77509 * 335.18793 * 20 19 18 22 22 H 1.08999 * 108.54880 * 293.91351 * 21 20 19 23 23 O 1.39050 * 130.38006 * 157.32359 * 21 20 19 24 24 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 26 26 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 27 27 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 28 28 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 29 29 H 1.00902 * 111.00190 * 56.03777 * 11 10 9 30 30 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 31 31 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 32 32 H 1.08998 * 110.86942 * 4.61934 * 15 13 12 33 33 H 1.09001 * 110.87173 * 128.30155 * 15 13 12 34 34 H 1.09000 * 110.24555 * 20.91014 * 18 16 15 35 35 H 1.08997 * 110.31583 * 258.94941 * 18 16 15 36 36 H 1.08995 * 110.74889 * 216.86843 * 20 19 18 37 37 H 1.08995 * 110.91035 * 93.57968 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0006 14 1 0.9392 -7.3913 0.8380 15 6 2.6023 -8.6009 0.0889 16 6 2.4073 -9.2610 -1.2601 17 1 3.0401 -8.8059 -2.0221 18 6 2.3177 -10.7560 -1.4511 19 8 1.2769 -10.9583 -2.4453 20 6 0.6336 -9.6795 -2.7304 21 6 0.8842 -8.8947 -1.4753 22 1 0.3389 -9.3654 -0.6573 23 8 0.9053 -7.5210 -1.2609 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.8746 -4.9841 -0.7827 30 1 3.0640 -6.0348 -0.8901 31 1 3.0628 -6.0349 0.8899 32 1 3.6336 -8.2711 0.2144 33 1 2.3071 -9.2717 0.8957 34 1 2.0433 -11.2403 -0.5139 35 1 3.2674 -11.1488 -1.8141 36 1 -0.4355 -9.8133 -2.8952 37 1 1.0973 -9.1936 -3.5887 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724620699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:37 Heat of formation + Delta-G solvation = -96.779658 kcal Electronic energy + Delta-G solvation = -17223.736811 eV Core-core repulsion = 14386.600209 eV Total energy + Delta-G solvation = -2837.136601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.16054 -38.82946 -37.28781 -35.07881 -33.68911 -32.32247 -30.49142 -29.39357 -26.94276 -25.04996 -22.89775 -22.67152 -22.38943 -21.53906 -18.61682 -18.35173 -17.53773 -17.06648 -16.67012 -16.31324 -16.06905 -15.82625 -15.47975 -15.00079 -14.56208 -14.15912 -13.98309 -13.76888 -13.45604 -13.19477 -12.88669 -12.82990 -12.75731 -12.50315 -12.08926 -12.00329 -11.78985 -11.45675 -11.39319 -11.21661 -10.75489 -10.57285 -10.56373 -9.34253 -8.20683 -6.33033 1.40229 1.43990 1.51963 2.06734 2.40349 2.71666 3.12450 3.15585 3.35056 3.62969 3.69325 3.95485 4.02831 4.11978 4.24301 4.25391 4.40834 4.49937 4.55155 4.63784 4.67720 4.73281 4.77010 4.77911 4.94775 5.02986 5.05849 5.10861 5.42312 5.50956 5.64758 5.76122 5.86349 6.10943 6.24845 6.46598 6.84068 7.36421 8.91490 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.061966 B = 0.003588 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.750125 B = 7801.167099 C = 7995.750290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.698 5.698 12 C 0.063 3.937 13 C 0.078 3.922 14 H 0.086 0.914 15 C -0.118 4.118 16 C -0.177 4.177 17 H 0.088 0.912 18 C 0.065 3.935 19 O -0.397 6.397 20 C 0.076 3.924 21 C 0.021 3.979 22 H 0.064 0.936 23 O -0.365 6.365 24 H 0.264 0.736 25 H -0.013 1.013 26 H -0.005 1.005 27 H 0.064 0.936 28 H 0.017 0.983 29 H 0.339 0.661 30 H 0.032 0.968 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 -21.713 -1.489 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.081 0.919 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.329 5.329 12 C -0.066 4.066 13 C 0.021 3.979 14 H 0.104 0.896 15 C -0.155 4.155 16 C -0.196 4.196 17 H 0.107 0.893 18 C -0.011 4.011 19 O -0.318 6.318 20 C -0.001 4.001 21 C -0.039 4.039 22 H 0.082 0.918 23 O -0.285 6.285 24 H 0.073 0.927 25 H 0.006 0.994 26 H 0.013 0.987 27 H 0.083 0.917 28 H 0.035 0.965 29 H 0.156 0.844 30 H 0.050 0.950 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.798 -21.644 -1.011 22.430 hybrid contribution 0.397 1.255 -0.779 1.529 sum 6.195 -20.390 -1.790 21.385 Atomic orbital electron populations 1.70106 1.07933 1.27943 1.51265 1.26022 0.95790 1.03535 0.94528 0.85435 0.78205 0.77734 0.79261 1.19118 1.20802 1.18953 1.21596 0.93603 0.92184 1.51185 0.91942 1.18927 0.94354 0.92471 0.94942 1.21796 0.95578 0.88279 0.98871 1.60537 1.20254 1.01969 1.50110 1.22198 0.94095 0.88790 1.01536 1.24017 0.93133 0.95018 0.85731 0.89644 1.22308 1.01082 0.95600 0.96554 1.23572 0.98631 0.97339 1.00084 0.89314 1.22487 0.92000 0.93508 0.93097 1.89328 1.51525 1.29202 1.61707 1.22315 0.99741 0.83346 0.94650 1.23104 0.96698 0.84086 0.99980 0.91812 1.88434 1.76503 1.21395 1.42126 0.92694 0.99450 0.98671 0.91717 0.96508 0.84420 0.95020 0.88365 0.88230 0.87932 0.89523 0.88656 0.87230 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.68 5.23 29.85 0.16 1.84 16 10 C 0.08 3.61 5.62 86.30 0.49 4.09 16 11 N -0.70 -25.84 6.50 -513.89 -3.34 -29.18 16 12 C 0.06 1.73 5.25 86.30 0.45 2.18 16 13 C 0.08 1.79 3.56 31.63 0.11 1.90 16 14 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 15 C -0.12 -1.80 6.37 31.12 0.20 -1.60 16 16 C -0.18 -2.96 3.38 -10.13 -0.03 -2.99 16 17 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 18 C 0.06 0.94 7.55 71.33 0.54 1.48 16 19 O -0.40 -7.84 11.58 -148.98 -1.72 -9.57 16 20 C 0.08 1.41 7.63 71.06 0.54 1.95 16 21 C 0.02 0.44 3.74 31.50 0.12 0.56 16 22 H 0.06 1.28 7.80 -2.39 -0.02 1.26 16 23 O -0.37 -9.90 10.82 -130.58 -1.41 -11.31 16 24 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 25 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 26 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.34 13.13 8.38 -89.69 -0.75 12.37 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.10 1.29 7.76 -2.39 -0.02 1.28 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -67.85 301.79 -0.62 -68.47 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.29 Total: 14.45 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 3.26 Total: -21.79 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -3.06 Total: -86.90 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -3.14 Total: -20.88 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.85 -0.62 -68.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.311 kcal (2) G-P(sol) polarization free energy of solvation -67.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds