Wall clock time and date at job start Mon Mar 30 2020 03:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47010 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.83510 * 305.54121 * 13 12 11 15 15 C 1.54230 * 109.83857 * 184.53228 * 13 12 11 16 16 C 1.54655 * 102.82951 * 218.31420 * 15 13 12 17 17 H 1.08993 * 114.02523 * 156.10066 * 16 15 13 18 18 C 1.54356 * 109.30862 * 286.17533 * 16 15 13 19 19 O 1.43585 * 105.43302 * 142.23365 * 18 16 15 20 20 C 1.45185 * 110.27895 * 335.76612 * 19 18 16 21 21 C 1.54390 * 106.85487 * 1.94361 * 20 19 18 22 22 H 1.09002 * 113.23150 * 143.21207 * 21 20 19 23 23 O 1.43057 * 109.84431 * 66.45516 * 13 12 11 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.00908 * 110.99637 * 56.05081 * 11 10 9 30 30 H 1.09000 * 109.47279 * 299.99866 * 12 11 10 31 31 H 1.09001 * 109.47448 * 60.00533 * 12 11 10 32 32 H 1.09003 * 110.73785 * 336.64859 * 15 13 12 33 33 H 1.08999 * 110.74017 * 99.97090 * 15 13 12 34 34 H 1.09000 * 110.25269 * 261.22339 * 18 16 15 35 35 H 1.08998 * 110.25711 * 23.15153 * 18 16 15 36 36 H 1.08996 * 110.50788 * 242.54486 * 20 19 18 37 37 H 1.09001 * 110.07977 * 121.09641 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 6 1.6355 -7.3799 0.0283 14 1 0.9338 -7.3795 0.8624 15 6 2.5945 -8.5817 0.1488 16 6 1.9481 -9.6318 -0.7846 17 1 2.6462 -10.3780 -1.1638 18 6 0.6863 -10.2084 -0.1078 19 8 -0.2671 -10.3874 -1.1663 20 6 0.0327 -9.4933 -2.2702 21 6 1.3126 -8.7204 -1.8853 22 1 1.9755 -8.5380 -2.7311 23 8 0.9237 -7.5185 -1.2049 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 2.8721 -3.6081 -0.8798 28 1 2.8721 -3.6002 0.9002 29 1 0.8743 -4.9879 -0.7641 30 1 3.0634 -6.0391 -0.8679 31 1 3.0636 -6.0304 0.9121 32 1 3.5921 -8.3161 -0.2012 33 1 2.6289 -8.9466 1.1753 34 1 0.9138 -11.1658 0.3610 35 1 0.3021 -9.5078 0.6335 36 1 -0.7875 -8.7931 -2.4281 37 1 0.2083 -10.0675 -3.1799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724620701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:39 Heat of formation + Delta-G solvation = -97.281780 kcal Electronic energy + Delta-G solvation = -17355.783844 eV Core-core repulsion = 14518.625469 eV Total energy + Delta-G solvation = -2837.158375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.92723 -37.38346 -35.56049 -33.08245 -32.71879 -30.95540 -29.28428 -27.94919 -25.23330 -23.46021 -22.61586 -21.28637 -20.80105 -20.35028 -17.53089 -16.35776 -16.26876 -15.96097 -15.34311 -15.11559 -14.71575 -14.39055 -14.20648 -13.67314 -13.29667 -12.95849 -12.69898 -12.20069 -11.97898 -11.92524 -11.65451 -11.31557 -11.27153 -11.04005 -10.93112 -10.86410 -10.49225 -9.98999 -9.77851 -9.66389 -9.29505 -9.09802 -8.33121 -7.78079 -5.97147 -3.99839 3.32615 3.38738 3.39808 3.43797 3.54126 4.00859 4.36813 4.44387 4.49099 4.61284 4.71033 4.97149 5.01742 5.09084 5.19686 5.35466 5.38644 5.39882 5.52258 5.53804 5.56750 5.65364 5.69927 5.89628 6.10585 6.36025 6.44635 6.62611 6.97231 7.00931 7.51646 7.77302 7.86539 8.01796 8.12599 8.46527 9.07752 9.63806 11.14368 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.056541 B = 0.003771 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.099100 B = 7423.307488 C = 7655.647222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.689 5.689 12 C 0.052 3.948 13 C 0.083 3.917 14 H 0.090 0.910 15 C -0.142 4.142 16 C -0.155 4.155 17 H 0.112 0.888 18 C 0.060 3.940 19 O -0.386 6.386 20 C 0.047 3.953 21 C 0.048 3.952 22 H 0.101 0.899 23 O -0.364 6.364 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.056 0.944 29 H 0.343 0.657 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -21.353 -2.148 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.321 5.321 12 C -0.078 4.078 13 C 0.025 3.975 14 H 0.107 0.893 15 C -0.180 4.180 16 C -0.174 4.174 17 H 0.130 0.870 18 C -0.016 4.016 19 O -0.305 6.305 20 C -0.029 4.029 21 C -0.010 4.010 22 H 0.119 0.881 23 O -0.284 6.284 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.161 0.839 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.249 -21.215 -1.523 21.690 hybrid contribution 1.195 1.050 -0.856 1.807 sum 5.444 -20.164 -2.379 21.021 Atomic orbital electron populations 1.69986 1.06030 1.26458 1.50733 1.25008 0.94839 0.99214 0.95338 0.86533 0.80043 0.83808 0.77577 1.19799 1.21030 1.20971 1.21219 0.92991 0.91040 1.50742 0.92742 1.19077 0.94043 0.90409 0.97783 1.22156 0.96994 0.88647 0.98433 1.60577 1.19465 1.01738 1.50280 1.22276 0.94554 0.90595 1.00382 1.22890 0.93306 0.93986 0.87302 0.89252 1.22995 0.99970 0.94200 1.00798 1.24284 0.98365 0.98408 0.96356 0.86998 1.23278 0.86772 1.01014 0.90557 1.88684 1.52708 1.61392 1.27753 1.23725 0.97336 0.92003 0.89809 1.24444 0.95534 0.85299 0.95693 0.88133 1.88405 1.64118 1.41466 1.34405 0.93046 0.95628 0.96751 0.96791 0.92503 0.83851 0.95556 0.90531 0.89953 0.89358 0.89634 0.91465 0.89602 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.44 5.62 -3.83 -0.02 1.42 16 11 N -0.69 -13.00 6.50 -113.78 -0.74 -13.74 16 12 C 0.05 0.76 5.25 -3.82 -0.02 0.74 16 13 C 0.08 1.02 3.04 -26.09 -0.08 0.94 16 14 H 0.09 1.18 7.82 -51.93 -0.41 0.77 16 15 C -0.14 -1.24 5.87 -25.22 -0.15 -1.38 16 16 C -0.16 -1.31 4.46 -87.22 -0.39 -1.70 16 17 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 18 C 0.06 0.58 7.02 37.87 0.27 0.84 16 19 O -0.39 -4.61 11.41 -35.23 -0.40 -5.01 16 20 C 0.05 0.49 7.59 37.89 0.29 0.78 16 21 C 0.05 0.49 4.66 -24.18 -0.11 0.38 16 22 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 23 O -0.36 -4.96 9.98 -35.23 -0.35 -5.32 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.34 6.63 8.36 -39.29 -0.33 6.30 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.67 7.85 -51.93 -0.41 0.26 16 33 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.69 6.96 -51.93 -0.36 0.33 16 36 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -32.14 299.97 -8.14 -40.28 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.11 Total: 0.35 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -0.77 Total: -11.32 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.00 Total: -40.42 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.75 Total: -10.33 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.14 -8.14 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.001 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds