Wall clock time and date at job start Mon Mar 30 2020 03:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47010 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.83510 * 305.54121 * 13 12 11 15 15 C 1.54230 * 109.83857 * 184.53228 * 13 12 11 16 16 C 1.54655 * 102.82951 * 218.31420 * 15 13 12 17 17 H 1.08993 * 114.02523 * 156.10066 * 16 15 13 18 18 C 1.54356 * 109.30862 * 286.17533 * 16 15 13 19 19 O 1.43585 * 105.43302 * 142.23365 * 18 16 15 20 20 C 1.45185 * 110.27895 * 335.76612 * 19 18 16 21 21 C 1.54390 * 106.85487 * 1.94361 * 20 19 18 22 22 H 1.09002 * 113.23150 * 143.21207 * 21 20 19 23 23 O 1.43057 * 109.84431 * 66.45516 * 13 12 11 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 26 26 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 27 27 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 28 28 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 29 29 H 1.00908 * 110.99637 * 56.05081 * 11 10 9 30 30 H 1.09000 * 109.47279 * 299.99866 * 12 11 10 31 31 H 1.09001 * 109.47448 * 60.00533 * 12 11 10 32 32 H 1.09003 * 110.73785 * 336.64859 * 15 13 12 33 33 H 1.08999 * 110.74017 * 99.97090 * 15 13 12 34 34 H 1.09000 * 110.25269 * 261.22339 * 18 16 15 35 35 H 1.08998 * 110.25711 * 23.15153 * 18 16 15 36 36 H 1.08996 * 110.50788 * 242.54486 * 20 19 18 37 37 H 1.09001 * 110.07977 * 121.09641 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 6 1.6355 -7.3799 0.0283 14 1 0.9338 -7.3795 0.8624 15 6 2.5945 -8.5817 0.1488 16 6 1.9481 -9.6318 -0.7846 17 1 2.6462 -10.3780 -1.1638 18 6 0.6863 -10.2084 -0.1078 19 8 -0.2671 -10.3874 -1.1663 20 6 0.0327 -9.4933 -2.2702 21 6 1.3126 -8.7204 -1.8853 22 1 1.9755 -8.5380 -2.7311 23 8 0.9237 -7.5185 -1.2049 24 1 -0.4850 0.8400 0.0004 25 1 0.6245 -2.5529 0.8956 26 1 0.6244 -2.5609 -0.8844 27 1 2.8721 -3.6081 -0.8798 28 1 2.8721 -3.6002 0.9002 29 1 0.8743 -4.9879 -0.7641 30 1 3.0634 -6.0391 -0.8679 31 1 3.0636 -6.0304 0.9121 32 1 3.5921 -8.3161 -0.2012 33 1 2.6289 -8.9466 1.1753 34 1 0.9138 -11.1658 0.3610 35 1 0.3021 -9.5078 0.6335 36 1 -0.7875 -8.7931 -2.4281 37 1 0.2083 -10.0675 -3.1799 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724620701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:39 Heat of formation + Delta-G solvation = -121.192646 kcal Electronic energy + Delta-G solvation = -17356.820697 eV Core-core repulsion = 14518.625469 eV Total energy + Delta-G solvation = -2838.195228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.75005 -38.39090 -37.06108 -35.03722 -33.65088 -32.34305 -30.61020 -29.09390 -26.72696 -24.95388 -23.59131 -22.55812 -21.84136 -21.67263 -18.53257 -18.35099 -17.32522 -16.82222 -16.67352 -16.29575 -16.08928 -15.60850 -15.45974 -15.12950 -14.33095 -14.14816 -14.03055 -13.90560 -13.30149 -12.97537 -12.83223 -12.75507 -12.52980 -12.40969 -12.16705 -12.07094 -11.92604 -11.66217 -11.41740 -11.22255 -10.59494 -10.58016 -10.53335 -9.31085 -8.21300 -6.33717 1.39984 1.40920 1.54348 2.39858 2.57390 2.80597 3.11959 3.24516 3.31755 3.67978 3.81371 3.97961 4.02309 4.12865 4.32201 4.34744 4.36351 4.48669 4.53405 4.66241 4.69704 4.75764 4.81907 4.85626 4.93999 5.02934 5.04601 5.19156 5.42363 5.64074 5.76246 5.85439 6.07566 6.14538 6.27585 6.49165 6.83792 7.35965 8.91376 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.056541 B = 0.003771 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.099100 B = 7423.307488 C = 7655.647222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.030 3.970 10 C 0.084 3.916 11 N -0.698 5.698 12 C 0.053 3.947 13 C 0.083 3.917 14 H 0.075 0.925 15 C -0.132 4.132 16 C -0.140 4.140 17 H 0.142 0.858 18 C 0.053 3.947 19 O -0.409 6.409 20 C 0.044 3.956 21 C 0.038 3.962 22 H 0.118 0.882 23 O -0.394 6.394 24 H 0.264 0.736 25 H -0.007 1.007 26 H -0.013 1.013 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.338 0.662 30 H 0.031 0.969 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.071 -22.235 -2.237 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.008 4.008 10 C -0.045 4.045 11 N -0.329 5.329 12 C -0.076 4.076 13 C 0.025 3.975 14 H 0.093 0.907 15 C -0.169 4.169 16 C -0.158 4.158 17 H 0.160 0.840 18 C -0.023 4.023 19 O -0.330 6.330 20 C -0.032 4.032 21 C -0.019 4.019 22 H 0.135 0.865 23 O -0.315 6.315 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.005 0.995 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.525 -22.124 -1.609 23.122 hybrid contribution 0.414 1.276 -0.839 1.582 sum 6.939 -20.848 -2.448 22.108 Atomic orbital electron populations 1.70128 1.07966 1.27815 1.51423 1.26031 0.95786 1.03576 0.94523 0.85316 0.79026 0.78337 0.77834 1.18389 1.20306 1.20247 1.21642 0.93589 0.92140 1.50958 0.91945 1.18940 0.94367 0.92575 0.94876 1.21785 0.95539 0.88398 0.98733 1.60511 1.20277 1.01949 1.50184 1.22407 0.94259 0.89893 1.01084 1.22833 0.93578 0.94395 0.86673 0.90747 1.22968 0.99426 0.92356 1.02190 1.24308 0.98053 0.98338 0.95110 0.84027 1.23441 0.86921 1.02010 0.89961 1.88656 1.54007 1.61668 1.28626 1.23810 0.96895 0.92016 0.90465 1.24713 0.95930 0.84609 0.96652 0.86470 1.88385 1.64880 1.43234 1.34975 0.92704 0.98814 0.99454 0.96494 0.91969 0.84472 0.95069 0.89317 0.88549 0.87494 0.87385 0.92966 0.91498 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.67 5.23 29.85 0.16 1.83 16 10 C 0.08 3.71 5.62 86.31 0.49 4.20 16 11 N -0.70 -26.64 6.50 -513.89 -3.34 -29.98 16 12 C 0.05 1.49 5.25 86.30 0.45 1.94 16 13 C 0.08 1.97 3.04 31.01 0.09 2.06 16 14 H 0.07 1.97 7.82 -2.39 -0.02 1.95 16 15 C -0.13 -1.92 5.87 31.57 0.19 -1.73 16 16 C -0.14 -1.94 4.46 -8.59 -0.04 -1.98 16 17 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 18 C 0.05 0.92 7.02 72.44 0.51 1.42 16 19 O -0.41 -9.43 11.41 -148.98 -1.70 -11.13 16 20 C 0.04 0.87 7.59 72.45 0.55 1.42 16 21 C 0.04 0.72 4.66 32.25 0.15 0.87 16 22 H 0.12 1.80 8.14 -2.39 -0.02 1.79 16 23 O -0.39 -10.64 9.98 -148.98 -1.49 -12.13 16 24 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 29 H 0.34 13.48 8.36 -89.69 -0.75 12.73 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.10 1.19 7.85 -2.39 -0.02 1.17 16 33 H 0.11 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.04 6.96 -2.39 -0.02 1.03 16 36 H 0.07 1.54 8.05 -2.39 -0.02 1.52 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -70.56 299.97 -0.69 -71.24 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.29 Total: 14.53 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 3.24 Total: -21.31 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -3.06 Total: -88.13 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -3.19 Total: -23.26 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.56 -0.69 -71.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.952 kcal (2) G-P(sol) polarization free energy of solvation -70.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds