Wall clock time and date at job start Mon Mar 30 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.00234 * 305.70294 * 13 12 11 15 15 C 1.56561 * 110.00963 * 184.36063 * 13 12 11 16 16 C 1.49258 * 99.62464 * 219.56397 * 15 13 12 17 17 H 1.08997 * 108.56793 * 291.69986 * 16 15 13 18 18 C 1.48818 * 131.58343 * 153.33955 * 16 15 13 19 19 O 1.45092 * 103.02413 * 203.32232 * 18 16 15 20 20 C 1.45188 * 108.67817 * 25.68304 * 19 18 16 21 21 C 1.52802 * 105.38197 * 7.49469 * 20 19 18 22 22 H 1.09005 * 112.58512 * 83.87461 * 21 20 19 23 23 O 1.42254 * 120.44978 * 219.77567 * 21 20 19 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.00902 * 111.00582 * 303.95797 * 11 10 9 30 30 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 31 31 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 32 32 H 1.08999 * 111.37513 * 337.16719 * 15 13 12 33 33 H 1.09004 * 111.36903 * 101.92048 * 15 13 12 34 34 H 1.08995 * 110.79084 * 321.86114 * 18 16 15 35 35 H 1.08996 * 110.79127 * 85.33537 * 18 16 15 36 36 H 1.09003 * 110.26192 * 248.51851 * 20 19 18 37 37 H 1.09001 * 110.34063 * 126.51664 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4350 -6.0760 0.0006 13 6 1.6349 -7.3800 0.0006 14 1 0.9308 -7.3854 0.8326 15 6 2.6050 -8.6038 0.1118 16 6 1.9326 -9.5421 -0.8344 17 1 0.9810 -9.8494 -0.4009 18 6 2.4625 -10.6629 -1.6577 19 8 1.4840 -10.7772 -2.7229 20 6 0.8357 -9.4901 -2.8988 21 6 1.6080 -8.5216 -2.0042 22 1 2.5027 -8.1285 -2.4871 23 8 0.9199 -7.5253 -1.2575 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8743 -4.9842 0.7827 30 1 3.0624 -6.0351 -0.8898 31 1 3.0636 -6.0349 0.8902 32 1 3.6083 -8.3476 -0.2285 33 1 2.6231 -9.0055 1.1250 34 1 3.4453 -10.4167 -2.0596 35 1 2.5003 -11.5848 -1.0776 36 1 -0.2063 -9.5461 -2.5836 37 1 0.8979 -9.1737 -3.9401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724620703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:41 Heat of formation + Delta-G solvation = -73.843467 kcal Electronic energy + Delta-G solvation = -17240.758164 eV Core-core repulsion = 14404.616151 eV Total energy + Delta-G solvation = -2836.142013 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.21149 -37.83888 -35.70449 -33.05318 -32.68727 -30.84334 -29.13517 -28.30959 -25.63545 -23.43733 -22.35953 -21.07475 -20.79364 -20.33939 -17.93266 -16.36608 -16.27756 -15.80328 -15.50036 -15.28168 -14.74140 -14.40890 -14.07402 -13.77590 -13.43521 -12.83762 -12.69842 -12.44129 -12.14621 -12.04143 -11.77967 -11.23229 -11.14402 -11.02750 -10.93641 -10.57472 -10.40962 -10.00287 -9.95470 -9.65597 -9.31964 -9.11462 -8.34462 -7.78080 -5.98611 -4.01302 2.97575 3.31695 3.38888 3.42844 3.51356 4.13575 4.19173 4.41057 4.47025 4.74825 4.85206 4.88749 4.96164 5.02936 5.20916 5.34333 5.37089 5.37414 5.40281 5.50289 5.60537 5.63621 5.71151 5.84778 6.07320 6.32723 6.35176 6.40086 6.81191 6.98605 7.47931 7.73602 7.84404 7.96845 8.10271 8.44623 9.06272 9.62386 11.12866 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.059321 B = 0.003624 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.893237 B = 7724.844041 C = 7887.362121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.684 5.684 12 C 0.047 3.953 13 C 0.083 3.917 14 H 0.092 0.908 15 C -0.120 4.120 16 C -0.185 4.185 17 H 0.089 0.911 18 C 0.074 3.926 19 O -0.381 6.381 20 C 0.057 3.943 21 C 0.029 3.971 22 H 0.089 0.911 23 O -0.337 6.337 24 H 0.260 0.740 25 H 0.026 0.974 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.057 0.943 29 H 0.335 0.665 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.291 -20.821 -0.582 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.061 4.061 11 N -0.315 5.315 12 C -0.083 4.083 13 C 0.026 3.974 14 H 0.110 0.890 15 C -0.158 4.158 16 C -0.204 4.204 17 H 0.108 0.892 18 C -0.002 4.002 19 O -0.301 6.301 20 C -0.019 4.019 21 C -0.030 4.030 22 H 0.106 0.894 23 O -0.256 6.256 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.153 0.847 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.801 -20.759 -1.456 21.357 hybrid contribution 0.933 1.169 1.128 1.874 sum 5.734 -19.590 -0.328 20.414 Atomic orbital electron populations 1.69991 1.06030 1.26467 1.50702 1.25014 0.94850 0.99237 0.95327 0.86526 0.80042 0.83780 0.77585 1.19791 1.20952 1.21038 1.21214 0.92992 0.91031 1.50783 0.92740 1.19072 0.94033 0.90386 0.97799 1.22163 0.96964 0.88526 0.98480 1.60489 1.19466 1.01749 1.49762 1.22321 0.94725 0.90656 1.00627 1.23800 0.93124 0.93629 0.86881 0.89028 1.21913 0.99500 0.94361 1.00012 1.22887 1.02947 0.96813 0.97709 0.89228 1.21744 0.92276 0.98087 0.88078 1.89212 1.54680 1.30754 1.55448 1.22845 0.97047 0.82406 0.99637 1.24512 0.95739 0.88632 0.94109 0.89366 1.88852 1.50333 1.57672 1.28709 0.93041 0.95559 0.96799 0.96795 0.92436 0.84715 0.91030 0.94695 0.89921 0.89476 0.91450 0.89157 0.90185 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.65 5.23 -27.89 -0.15 0.51 16 10 C 0.07 1.43 5.62 -3.83 -0.02 1.41 16 11 N -0.68 -12.55 6.49 -113.78 -0.74 -13.29 16 12 C 0.05 0.66 5.30 -3.82 -0.02 0.64 16 13 C 0.08 1.00 3.65 -24.81 -0.09 0.91 16 14 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 15 C -0.12 -1.04 6.39 -26.65 -0.17 -1.21 16 16 C -0.18 -1.70 2.94 -91.41 -0.27 -1.96 16 17 H 0.09 0.89 8.04 -51.93 -0.42 0.48 16 18 C 0.07 0.63 7.48 35.11 0.26 0.89 16 19 O -0.38 -4.20 11.56 -35.23 -0.41 -4.61 16 20 C 0.06 0.60 7.63 37.06 0.28 0.88 16 21 C 0.03 0.33 4.07 -23.74 -0.10 0.23 16 22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 23 O -0.34 -4.86 11.14 -35.23 -0.39 -5.26 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.34 5.89 8.73 -39.29 -0.34 5.55 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 302.80 15.07 4.56 4.56 Total: -1.00 -32.07 302.80 -8.15 -40.22 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.21 Total: -0.44 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.68 Total: -11.47 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.00 Total: -39.83 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.80 Total: -9.87 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.07 -8.15 -40.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.624 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds