Wall clock time and date at job start Mon Mar 30 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 H 1.08997 * 110.00234 * 305.70294 * 13 12 11 15 15 C 1.56561 * 110.00963 * 184.36063 * 13 12 11 16 16 C 1.49258 * 99.62464 * 219.56397 * 15 13 12 17 17 H 1.08997 * 108.56793 * 291.69986 * 16 15 13 18 18 C 1.48818 * 131.58343 * 153.33955 * 16 15 13 19 19 O 1.45092 * 103.02413 * 203.32232 * 18 16 15 20 20 C 1.45188 * 108.67817 * 25.68304 * 19 18 16 21 21 C 1.52802 * 105.38197 * 7.49469 * 20 19 18 22 22 H 1.09005 * 112.58512 * 83.87461 * 21 20 19 23 23 O 1.42254 * 120.44978 * 219.77567 * 21 20 19 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.00902 * 111.00582 * 303.95797 * 11 10 9 30 30 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 31 31 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 32 32 H 1.08999 * 111.37513 * 337.16719 * 15 13 12 33 33 H 1.09004 * 111.36903 * 101.92048 * 15 13 12 34 34 H 1.08995 * 110.79084 * 321.86114 * 18 16 15 35 35 H 1.08996 * 110.79127 * 85.33537 * 18 16 15 36 36 H 1.09003 * 110.26192 * 248.51851 * 20 19 18 37 37 H 1.09001 * 110.34063 * 126.51664 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4350 -6.0760 0.0006 13 6 1.6349 -7.3800 0.0006 14 1 0.9308 -7.3854 0.8326 15 6 2.6050 -8.6038 0.1118 16 6 1.9326 -9.5421 -0.8344 17 1 0.9810 -9.8494 -0.4009 18 6 2.4625 -10.6629 -1.6577 19 8 1.4840 -10.7772 -2.7229 20 6 0.8357 -9.4901 -2.8988 21 6 1.6080 -8.5216 -2.0042 22 1 2.5027 -8.1285 -2.4871 23 8 0.9199 -7.5253 -1.2575 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8743 -4.9842 0.7827 30 1 3.0624 -6.0351 -0.8898 31 1 3.0636 -6.0349 0.8902 32 1 3.6083 -8.3476 -0.2285 33 1 2.6231 -9.0055 1.1250 34 1 3.4453 -10.4167 -2.0596 35 1 2.5003 -11.5848 -1.0776 36 1 -0.2063 -9.5461 -2.5836 37 1 0.8979 -9.1737 -3.9401 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724620703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:41 Heat of formation + Delta-G solvation = -97.752811 kcal Electronic energy + Delta-G solvation = -17241.794951 eV Core-core repulsion = 14404.616151 eV Total energy + Delta-G solvation = -2837.178800 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.04201 -38.77130 -37.21966 -35.04643 -33.59704 -32.29596 -30.42003 -29.32141 -27.07392 -25.12341 -23.29173 -22.48224 -21.69779 -21.61989 -18.77833 -18.52594 -17.16613 -16.98043 -16.54134 -16.34374 -16.11660 -15.86634 -15.34815 -15.00240 -14.56797 -14.19653 -13.99725 -13.76888 -13.41693 -13.19455 -12.86888 -12.81049 -12.66750 -12.48176 -12.09348 -11.98935 -11.89382 -11.48639 -11.32338 -11.10722 -10.73242 -10.58379 -10.52663 -9.24062 -8.21269 -6.33368 1.39965 1.40891 1.54198 2.14241 2.40059 2.77673 3.12052 3.19846 3.36290 3.61590 3.76652 3.90786 4.02055 4.13915 4.23941 4.29585 4.42459 4.50165 4.61716 4.64741 4.67169 4.72133 4.80141 4.85710 4.92243 4.99316 5.05078 5.18813 5.42791 5.60361 5.65072 5.76854 5.91864 6.12628 6.27747 6.54630 6.84379 7.36196 8.91276 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.059321 B = 0.003624 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.893237 B = 7724.844041 C = 7887.362121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.030 3.970 10 C 0.086 3.914 11 N -0.698 5.698 12 C 0.048 3.952 13 C 0.080 3.920 14 H 0.094 0.906 15 C -0.106 4.106 16 C -0.167 4.167 17 H 0.080 0.920 18 C 0.072 3.928 19 O -0.398 6.398 20 C 0.058 3.942 21 C 0.015 3.985 22 H 0.091 0.909 23 O -0.371 6.371 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.008 1.008 27 H 0.023 0.977 28 H 0.054 0.946 29 H 0.338 0.662 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.228 -21.531 0.017 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.043 4.043 11 N -0.329 5.329 12 C -0.081 4.081 13 C 0.022 3.978 14 H 0.112 0.888 15 C -0.144 4.144 16 C -0.186 4.186 17 H 0.099 0.901 18 C -0.003 4.003 19 O -0.318 6.318 20 C -0.018 4.018 21 C -0.044 4.044 22 H 0.108 0.892 23 O -0.291 6.291 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.010 0.990 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.752 -21.499 -0.854 22.550 hybrid contribution 0.281 1.340 0.927 1.653 sum 7.033 -20.159 0.073 21.350 Atomic orbital electron populations 1.70130 1.07923 1.27784 1.51446 1.26028 0.95797 1.03552 0.94579 0.85325 0.79031 0.78405 0.77816 1.18418 1.20400 1.20211 1.21647 0.93576 0.92190 1.50891 0.92003 1.18932 0.94364 0.92504 0.94925 1.21759 0.95492 0.88353 0.98689 1.60383 1.20450 1.01804 1.50302 1.22409 0.94446 0.89924 1.01298 1.23884 0.93698 0.93917 0.86258 0.88769 1.21878 0.98946 0.92261 1.01330 1.22829 1.02712 0.96313 0.96732 0.90140 1.21948 0.92199 0.98676 0.87505 1.89193 1.55397 1.30782 1.56435 1.22822 0.96722 0.82353 0.99951 1.24661 0.95743 0.88795 0.95176 0.89181 1.88813 1.51553 1.58793 1.29928 0.92723 0.99182 0.98971 0.95874 0.92736 0.84402 0.91452 0.92617 0.88692 0.86995 0.90060 0.87159 0.90794 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.66 5.23 29.85 0.16 1.82 16 10 C 0.09 3.70 5.62 86.30 0.49 4.18 16 11 N -0.70 -25.59 6.49 -513.89 -3.33 -28.93 16 12 C 0.05 1.30 5.30 86.30 0.46 1.76 16 13 C 0.08 1.80 3.65 31.84 0.12 1.92 16 14 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 15 C -0.11 -1.53 6.39 30.64 0.20 -1.33 16 16 C -0.17 -2.71 2.94 -11.31 -0.03 -2.74 16 17 H 0.08 1.47 8.04 -2.39 -0.02 1.45 16 18 C 0.07 1.04 7.48 70.66 0.53 1.57 16 19 O -0.40 -8.25 11.56 -148.98 -1.72 -9.97 16 20 C 0.06 1.20 7.63 71.92 0.55 1.74 16 21 C 0.01 0.32 4.07 32.53 0.13 0.46 16 22 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 23 O -0.37 -10.62 11.14 -148.98 -1.66 -12.28 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.34 11.96 8.73 -89.69 -0.78 11.18 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.18 7.92 -2.39 -0.02 1.16 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -69.75 302.80 -0.87 -70.62 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.25 Total: 13.29 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 3.28 Total: -21.72 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -3.05 Total: -86.66 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -3.38 Total: -22.25 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.75 -0.87 -70.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724620703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.134 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds