Wall clock time and date at job start Mon Mar 30 2020 03:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99514 * 2 1 4 4 H 1.48493 * 109.47001 * 269.99368 * 3 2 1 5 5 H 1.48509 * 109.46822 * 149.99756 * 3 2 1 6 6 H 1.48495 * 109.47019 * 30.00002 * 3 2 1 7 7 C 1.37875 * 120.00636 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00282 * 176.98530 * 7 2 1 9 9 C 1.50704 * 119.99672 * 356.99568 * 7 2 1 10 10 C 1.52992 * 115.55052 * 279.54807 * 9 7 2 11 11 O 1.42901 * 109.47163 * 301.84434 * 10 9 7 12 12 C 1.42902 * 114.00290 * 184.84151 * 11 10 9 13 13 H 1.08996 * 109.53938 * 329.82340 * 12 11 10 14 14 C 1.53178 * 109.54292 * 89.99945 * 12 11 10 15 15 C 1.53087 * 109.16327 * 176.84792 * 14 12 11 16 16 O 1.42909 * 109.41416 * 302.39475 * 15 14 12 17 17 C 1.42901 * 114.10214 * 61.15582 * 16 15 14 18 18 C 1.53090 * 109.41449 * 298.84394 * 17 16 15 19 19 H 1.08998 * 109.52276 * 297.70290 * 18 17 16 20 20 N 1.46895 * 109.52275 * 177.51055 * 18 17 16 21 21 C 1.53007 * 117.49831 * 133.83871 * 9 7 2 22 22 C 1.52999 * 59.99925 * 252.51198 * 21 9 7 23 23 H 0.97007 * 119.99246 * 185.81492 * 1 2 3 24 24 H 1.08999 * 109.47600 * 61.84528 * 10 9 7 25 25 H 1.09001 * 109.47535 * 181.84411 * 10 9 7 26 26 H 1.08996 * 109.52334 * 296.75794 * 14 12 11 27 27 H 1.09000 * 109.52177 * 56.88059 * 14 12 11 28 28 H 1.08998 * 109.48118 * 62.37305 * 15 14 12 29 29 H 1.08997 * 109.48391 * 182.39744 * 15 14 12 30 30 H 1.09008 * 109.47548 * 58.82467 * 17 16 15 31 31 H 1.08995 * 109.48315 * 178.85466 * 17 16 15 32 32 H 1.00903 * 111.00037 * 60.31248 * 20 18 17 33 33 H 1.00902 * 111.00327 * 184.26786 * 20 18 17 34 34 H 1.09001 * 117.49508 * 359.97438 * 21 9 7 35 35 H 1.08997 * 117.49758 * 145.01899 * 21 9 7 36 36 H 1.08999 * 117.49857 * 252.50935 * 22 21 9 37 37 H 1.09000 * 117.50302 * 107.49211 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5467 1.4403 0.7001 6 1 1.4464 2.6527 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0835 -1.1946 -0.0487 9 6 1.2528 -2.4982 0.0695 10 6 0.7872 -2.9184 1.4650 11 8 1.9173 -3.0204 2.3336 12 6 1.6053 -3.5139 3.6379 13 1 0.5888 -3.2241 3.9038 14 6 1.7223 -5.0412 3.6494 15 6 1.4637 -5.5543 5.0683 16 8 2.3930 -4.9487 5.9692 17 6 2.2975 -3.5244 6.0359 18 6 2.5897 -2.9297 4.6558 19 1 3.6091 -3.1780 4.3606 20 7 2.4339 -1.4699 4.7074 21 6 1.6694 -3.6060 -0.9001 22 6 0.3521 -2.8578 -1.1138 23 1 -0.4849 -0.8358 0.0851 24 1 0.0941 -2.1738 1.8564 25 1 0.2865 -3.8848 1.4053 26 1 0.9866 -5.4680 2.9678 27 1 2.7239 -5.3321 3.3327 28 1 0.4474 -5.2982 5.3678 29 1 1.5875 -6.6370 5.0915 30 1 1.2921 -3.2418 6.3481 31 1 3.0222 -3.1448 6.7562 32 1 3.0733 -1.0613 5.3725 33 1 2.5535 -1.0609 3.7927 34 1 2.4871 -3.3913 -1.5882 35 1 1.6121 -4.6345 -0.5439 36 1 -0.5720 -3.3941 -0.8982 37 1 0.3033 -2.1511 -1.9422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724865227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:33 Heat of formation + Delta-G solvation = -76.970445 kcal Electronic energy + Delta-G solvation = -18298.083279 eV Core-core repulsion = 15461.805670 eV Total energy + Delta-G solvation = -2836.277609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59398 -37.53697 -35.98127 -34.03784 -31.84043 -31.65070 -28.32501 -26.40348 -24.74940 -23.90698 -22.71422 -21.27479 -20.12175 -19.36252 -16.78458 -16.53937 -16.32509 -15.62476 -15.38406 -14.95996 -14.24781 -14.12833 -13.78832 -13.70705 -13.10615 -12.81550 -12.45366 -12.45061 -12.02195 -11.66120 -11.16244 -11.00028 -10.76261 -10.57265 -10.46118 -10.27046 -10.09521 -9.76850 -9.47554 -8.97111 -8.56136 -8.46776 -8.38517 -8.20267 -6.29399 -4.02419 3.44374 3.48114 3.64021 3.76785 4.13386 4.54325 4.67202 4.85102 4.91939 5.11936 5.19432 5.23172 5.30937 5.38288 5.52964 5.63012 5.68182 5.77961 5.91026 5.96071 6.10287 6.14263 6.20896 6.28068 6.45442 6.55153 6.62007 6.85156 7.05103 7.23003 7.25050 7.39909 7.72700 8.00332 8.32029 8.47682 8.92169 9.70304 11.08943 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.007657 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.015618 B = 3655.744962 C = 4451.258740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 1.069 2.931 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.555 4.555 8 H 0.052 0.948 9 C 0.023 3.977 10 C 0.108 3.892 11 O -0.356 6.356 12 C 0.090 3.910 13 H 0.061 0.939 14 C -0.178 4.178 15 C 0.064 3.936 16 O -0.384 6.384 17 C 0.070 3.930 18 C 0.065 3.935 19 H 0.048 0.952 20 N -0.842 5.842 21 C -0.192 4.192 22 C -0.177 4.177 23 H 0.272 0.728 24 H 0.046 0.954 25 H 0.015 0.985 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.335 0.665 33 H 0.365 0.635 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 -7.675 9.260 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.898 3.102 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.593 4.593 8 H 0.070 0.930 9 C 0.023 3.977 10 C 0.031 3.969 11 O -0.274 6.274 12 C 0.031 3.969 13 H 0.079 0.921 14 C -0.216 4.216 15 C -0.013 4.013 16 O -0.302 6.302 17 C -0.008 4.008 18 C -0.047 4.047 19 H 0.066 0.934 20 N -0.375 5.375 21 C -0.229 4.229 22 C -0.215 4.215 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.181 0.819 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.810 -6.240 9.463 11.479 hybrid contribution 0.662 -1.653 -0.479 1.843 sum 2.472 -7.893 8.984 12.212 Atomic orbital electron populations 1.70716 1.06740 1.31309 1.45729 1.25736 0.96564 1.02146 0.93507 0.83546 0.74733 0.75265 0.76667 1.21663 1.21495 1.21058 1.21203 0.93635 0.89340 1.55127 0.93006 1.19023 0.98617 0.94860 0.85234 1.22191 0.87170 0.96030 0.91484 1.88005 1.33543 1.85086 1.20759 1.22011 0.98098 0.91354 0.85417 0.92093 1.22761 1.03829 0.97427 0.97625 1.22566 0.92475 0.97913 0.88324 1.87900 1.59379 1.19579 1.63320 1.22564 1.02111 0.80326 0.95754 1.21959 0.98305 0.89664 0.94804 0.93382 1.58622 1.60308 1.03059 1.15512 1.22821 0.98412 0.95657 1.06001 1.22793 0.92309 1.03151 1.03214 0.91665 0.93618 0.96686 0.90685 0.90327 0.93108 0.88745 0.92246 0.88837 0.85321 0.81903 0.90173 0.91571 0.91668 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.68 13.54 55.43 0.75 -25.93 16 2 C 0.03 0.71 5.44 -17.82 -0.10 0.61 16 3 Si 1.07 25.08 29.90 -169.99 -5.08 19.99 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.56 -15.45 8.62 -34.44 -0.30 -15.75 16 8 H 0.05 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.02 0.58 1.20 -155.66 -0.19 0.39 16 10 C 0.11 2.44 5.52 37.15 0.20 2.65 16 11 O -0.36 -7.65 9.26 -35.23 -0.33 -7.98 16 12 C 0.09 1.56 2.33 -26.55 -0.06 1.50 16 13 H 0.06 1.08 7.83 -51.93 -0.41 0.68 16 14 C -0.18 -2.58 5.76 -26.59 -0.15 -2.74 16 15 C 0.06 0.78 6.84 37.20 0.25 1.04 16 16 O -0.38 -5.30 10.77 -35.23 -0.38 -5.67 16 17 C 0.07 0.91 6.42 37.20 0.24 1.15 16 18 C 0.06 1.00 3.16 -67.57 -0.21 0.79 16 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 20 N -0.84 -13.13 9.25 -4.55 -0.04 -13.18 16 21 C -0.19 -4.28 9.94 -26.73 -0.27 -4.54 16 22 C -0.18 -4.10 8.72 -26.73 -0.23 -4.34 16 23 H 0.27 7.91 6.15 -40.82 -0.25 7.66 16 24 H 0.05 1.12 7.80 -51.93 -0.40 0.71 16 25 H 0.01 0.31 7.85 -51.93 -0.41 -0.10 16 26 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.34 4.23 9.04 -39.29 -0.36 3.87 16 33 H 0.37 6.67 8.50 -39.29 -0.33 6.34 16 34 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -30.06 302.28 -7.34 -37.40 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.00 Total: 10.06 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -0.81 Total: -19.24 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.71 Total: -39.11 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.71 Total: -13.65 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 19.99 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.06 -7.34 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724865227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.574 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds