Wall clock time and date at job start Mon Mar 30 2020 03:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99514 * 2 1 4 4 H 1.48493 * 109.47001 * 269.99368 * 3 2 1 5 5 H 1.48509 * 109.46822 * 149.99756 * 3 2 1 6 6 H 1.48495 * 109.47019 * 30.00002 * 3 2 1 7 7 C 1.37875 * 120.00636 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00282 * 176.98530 * 7 2 1 9 9 C 1.50704 * 119.99672 * 356.99568 * 7 2 1 10 10 C 1.52992 * 115.55052 * 279.54807 * 9 7 2 11 11 O 1.42901 * 109.47163 * 301.84434 * 10 9 7 12 12 C 1.42902 * 114.00290 * 184.84151 * 11 10 9 13 13 H 1.08996 * 109.53938 * 329.82340 * 12 11 10 14 14 C 1.53178 * 109.54292 * 89.99945 * 12 11 10 15 15 C 1.53087 * 109.16327 * 176.84792 * 14 12 11 16 16 O 1.42909 * 109.41416 * 302.39475 * 15 14 12 17 17 C 1.42901 * 114.10214 * 61.15582 * 16 15 14 18 18 C 1.53090 * 109.41449 * 298.84394 * 17 16 15 19 19 H 1.08998 * 109.52276 * 297.70290 * 18 17 16 20 20 N 1.46895 * 109.52275 * 177.51055 * 18 17 16 21 21 C 1.53007 * 117.49831 * 133.83871 * 9 7 2 22 22 C 1.52999 * 59.99925 * 252.51198 * 21 9 7 23 23 H 0.97007 * 119.99246 * 185.81492 * 1 2 3 24 24 H 1.08999 * 109.47600 * 61.84528 * 10 9 7 25 25 H 1.09001 * 109.47535 * 181.84411 * 10 9 7 26 26 H 1.08996 * 109.52334 * 296.75794 * 14 12 11 27 27 H 1.09000 * 109.52177 * 56.88059 * 14 12 11 28 28 H 1.08998 * 109.48118 * 62.37305 * 15 14 12 29 29 H 1.08997 * 109.48391 * 182.39744 * 15 14 12 30 30 H 1.09008 * 109.47548 * 58.82467 * 17 16 15 31 31 H 1.08995 * 109.48315 * 178.85466 * 17 16 15 32 32 H 1.00903 * 111.00037 * 60.31248 * 20 18 17 33 33 H 1.00902 * 111.00327 * 184.26786 * 20 18 17 34 34 H 1.09001 * 117.49508 * 359.97438 * 21 9 7 35 35 H 1.08997 * 117.49758 * 145.01899 * 21 9 7 36 36 H 1.08999 * 117.49857 * 252.50935 * 22 21 9 37 37 H 1.09000 * 117.50302 * 107.49211 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5467 1.4403 0.7001 6 1 1.4464 2.6527 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0835 -1.1946 -0.0487 9 6 1.2528 -2.4982 0.0695 10 6 0.7872 -2.9184 1.4650 11 8 1.9173 -3.0204 2.3336 12 6 1.6053 -3.5139 3.6379 13 1 0.5888 -3.2241 3.9038 14 6 1.7223 -5.0412 3.6494 15 6 1.4637 -5.5543 5.0683 16 8 2.3930 -4.9487 5.9692 17 6 2.2975 -3.5244 6.0359 18 6 2.5897 -2.9297 4.6558 19 1 3.6091 -3.1780 4.3606 20 7 2.4339 -1.4699 4.7074 21 6 1.6694 -3.6060 -0.9001 22 6 0.3521 -2.8578 -1.1138 23 1 -0.4849 -0.8358 0.0851 24 1 0.0941 -2.1738 1.8564 25 1 0.2865 -3.8848 1.4053 26 1 0.9866 -5.4680 2.9678 27 1 2.7239 -5.3321 3.3327 28 1 0.4474 -5.2982 5.3678 29 1 1.5875 -6.6370 5.0915 30 1 1.2921 -3.2418 6.3481 31 1 3.0222 -3.1448 6.7562 32 1 3.0733 -1.0613 5.3725 33 1 2.5535 -1.0609 3.7927 34 1 2.4871 -3.3913 -1.5882 35 1 1.6121 -4.6345 -0.5439 36 1 -0.5720 -3.3941 -0.8982 37 1 0.3033 -2.1511 -1.9422 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724865227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:32 Heat of formation + Delta-G solvation = -98.284813 kcal Electronic energy + Delta-G solvation = -18299.007540 eV Core-core repulsion = 15461.805670 eV Total energy + Delta-G solvation = -2837.201870 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.81231 -39.19042 -37.57519 -35.33266 -33.94258 -32.85081 -29.50212 -28.10010 -26.82286 -25.17614 -23.86148 -23.09749 -21.58748 -21.09799 -18.70121 -17.89086 -17.48247 -17.03046 -16.62951 -16.27400 -15.85715 -15.63748 -15.44211 -15.29055 -14.57861 -14.33796 -14.22746 -13.76636 -13.59578 -12.97386 -12.81269 -12.62979 -12.32071 -12.23278 -12.01890 -11.94073 -11.54871 -11.33987 -10.78453 -10.68181 -10.52823 -10.26956 -10.19796 -9.72266 -8.50084 -6.23149 1.53472 1.61536 1.79329 2.55657 2.61912 2.79922 3.25387 3.33554 3.49386 3.65166 3.79773 3.97429 4.10176 4.14255 4.19667 4.26391 4.31797 4.38566 4.48033 4.63156 4.68472 4.69011 4.76613 4.79708 4.84410 4.95764 5.00793 5.11340 5.36779 5.41756 5.95450 6.16541 6.18238 6.26262 6.44168 6.51910 6.75830 7.55601 8.89438 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.007657 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.015618 B = 3655.744962 C = 4451.258740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.018 4.018 3 Si 1.110 2.890 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.284 1.284 7 C -0.566 4.566 8 H 0.034 0.966 9 C -0.012 4.012 10 C 0.124 3.876 11 O -0.377 6.377 12 C 0.082 3.918 13 H 0.053 0.947 14 C -0.172 4.172 15 C 0.065 3.935 16 O -0.392 6.392 17 C 0.076 3.924 18 C 0.066 3.934 19 H 0.036 0.964 20 N -0.845 5.845 21 C -0.172 4.172 22 C -0.173 4.173 23 H 0.264 0.736 24 H 0.017 0.983 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.351 0.649 33 H 0.348 0.652 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -8.756 10.307 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.217 4.217 3 Si 0.933 3.067 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.604 4.604 8 H 0.052 0.948 9 C -0.013 4.013 10 C 0.047 3.953 11 O -0.296 6.296 12 C 0.023 3.977 13 H 0.071 0.929 14 C -0.210 4.210 15 C -0.011 4.011 16 O -0.310 6.310 17 C -0.001 4.001 18 C -0.046 4.046 19 H 0.054 0.946 20 N -0.378 5.378 21 C -0.210 4.210 22 C -0.210 4.210 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.152 -7.348 10.531 13.020 hybrid contribution 0.585 -1.363 -0.793 1.682 sum 2.737 -8.711 9.738 13.349 Atomic orbital electron populations 1.70816 1.07464 1.30900 1.47736 1.26928 0.96666 1.05286 0.92824 0.83017 0.74247 0.72074 0.77356 1.20456 1.20080 1.20959 1.21418 0.93031 0.91221 1.54683 0.94773 1.19174 1.00114 0.94978 0.86986 1.21844 0.86969 0.96111 0.90368 1.87963 1.33350 1.85808 1.22502 1.22308 0.98162 0.93395 0.83831 0.92915 1.22709 1.03543 0.95159 0.99597 1.22712 0.92826 0.99226 0.86375 1.87901 1.59947 1.19678 1.63457 1.22579 1.03034 0.80118 0.94355 1.22018 0.97139 0.89546 0.95902 0.94560 1.58629 1.61006 1.03350 1.14774 1.22843 0.97518 0.96305 1.04290 1.22708 0.93694 1.03001 1.01622 0.92561 0.96486 0.94392 0.90094 0.91162 0.91929 0.86103 0.91840 0.86667 0.83506 0.83836 0.90622 0.88799 0.89474 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.54 21.45 0.29 -55.26 16 2 C -0.02 -0.99 5.44 84.65 0.46 -0.53 16 3 Si 1.11 50.80 29.90 68.60 2.05 52.85 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.57 -31.95 8.62 25.60 0.22 -31.73 16 8 H 0.03 1.99 7.82 -2.91 -0.02 1.97 16 9 C -0.01 -0.60 1.20 -52.93 -0.06 -0.66 16 10 C 0.12 5.60 5.52 71.98 0.40 6.00 16 11 O -0.38 -16.24 9.26 -148.98 -1.38 -17.62 16 12 C 0.08 2.75 2.33 30.71 0.07 2.82 16 13 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 14 C -0.17 -4.66 5.76 30.68 0.18 -4.49 16 15 C 0.07 1.41 6.84 72.01 0.49 1.90 16 16 O -0.39 -9.76 10.77 -148.98 -1.60 -11.36 16 17 C 0.08 1.83 6.42 72.01 0.46 2.29 16 18 C 0.07 1.99 3.16 45.01 0.14 2.13 16 19 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 20 N -0.84 -26.02 9.25 -168.31 -1.56 -27.57 16 21 C -0.17 -7.47 9.94 30.60 0.30 -7.17 16 22 C -0.17 -7.92 8.72 30.59 0.27 -7.66 16 23 H 0.26 15.68 6.15 -92.70 -0.57 15.11 16 24 H 0.02 0.85 7.80 -2.39 -0.02 0.83 16 25 H 0.04 1.51 7.85 -2.39 -0.02 1.49 16 26 H 0.08 2.09 7.89 -2.39 -0.02 2.07 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.35 8.53 9.04 -89.69 -0.81 7.72 16 33 H 0.35 12.92 8.50 -89.69 -0.76 12.16 16 34 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -64.49 302.28 0.42 -64.07 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.31 Total: 31.99 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 2.93 Total: -37.11 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.27 Total: -82.84 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -2.98 Total: -28.98 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -64.49 0.42 -64.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724865227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.211 kcal (2) G-P(sol) polarization free energy of solvation -64.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds