Wall clock time and date at job start Mon Mar 30 2020 03:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48503 * 109.46954 * 269.99447 * 3 2 1 5 5 H 1.48493 * 109.47327 * 29.99604 * 3 2 1 6 6 H 1.48501 * 109.46964 * 150.00094 * 3 2 1 7 7 C 1.37879 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00403 * 184.70034 * 7 2 1 9 9 C 1.50702 * 119.99840 * 4.70568 * 7 2 1 10 10 C 1.53003 * 115.54839 * 324.45886 * 9 7 2 11 11 O 1.42902 * 109.47007 * 185.80556 * 10 9 7 12 12 C 1.42895 * 114.00227 * 175.01378 * 11 10 9 13 13 H 1.09006 * 109.54159 * 35.05509 * 12 11 10 14 14 C 1.53175 * 109.54843 * 274.88337 * 12 11 10 15 15 C 1.53087 * 109.16718 * 183.15193 * 14 12 11 16 16 O 1.42907 * 109.41793 * 57.60353 * 15 14 12 17 17 C 1.42906 * 114.09670 * 298.84635 * 16 15 14 18 18 C 1.53093 * 109.41432 * 61.15531 * 17 16 15 19 19 H 1.09002 * 109.51971 * 182.48663 * 18 17 16 20 20 N 1.46901 * 109.52109 * 62.29727 * 18 17 16 21 21 C 1.52999 * 117.49970 * 110.13340 * 9 7 2 22 22 C 1.53005 * 117.49623 * 178.79228 * 9 7 2 23 23 H 0.97008 * 119.99753 * 5.00607 * 1 2 3 24 24 H 1.08991 * 109.47088 * 65.80838 * 10 9 7 25 25 H 1.09003 * 109.47159 * 305.80153 * 10 9 7 26 26 H 1.08999 * 109.51761 * 303.05596 * 14 12 11 27 27 H 1.08999 * 109.52510 * 63.24074 * 14 12 11 28 28 H 1.09000 * 109.48406 * 177.59143 * 15 14 12 29 29 H 1.09006 * 109.47945 * 297.61113 * 15 14 12 30 30 H 1.08992 * 109.48025 * 181.13771 * 17 16 15 31 31 H 1.08998 * 109.48044 * 301.17372 * 17 16 15 32 32 H 1.00899 * 110.99919 * 65.26382 * 20 18 17 33 33 H 1.00901 * 110.99399 * 189.21410 * 20 18 17 34 34 H 1.09008 * 117.49405 * 215.00236 * 21 9 7 35 35 H 1.08998 * 117.50145 * 0.02562 * 21 9 7 36 36 H 1.08994 * 117.49941 * 359.97050 * 22 9 7 37 37 H 1.09004 * 117.49671 * 145.00047 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0817 -1.1958 0.0772 9 6 1.2546 -2.4970 -0.1060 10 6 -0.1018 -2.5374 0.6008 11 8 -0.6346 -3.8617 0.5337 12 6 -1.8510 -4.0365 1.2628 13 1 -2.4460 -3.1251 1.2031 14 6 -1.5302 -4.3437 2.7288 15 6 -2.8354 -4.6069 3.4844 16 8 -3.5356 -5.6859 2.8618 17 6 -3.9035 -5.4362 1.5036 18 6 -2.6411 -5.2064 0.6685 19 1 -2.9215 -4.9722 -0.3585 20 7 -1.8121 -6.4190 0.6881 21 6 1.3975 -3.2901 -1.4065 22 6 2.0783 -3.7862 -0.1284 23 1 -0.4850 0.8369 -0.0733 24 1 -0.7869 -1.8450 0.1120 25 1 0.0236 -2.2487 1.6444 26 1 -0.8926 -5.2260 2.7849 27 1 -1.0160 -3.4926 3.1753 28 1 -2.6105 -4.8680 4.5185 29 1 -3.4551 -3.7104 3.4625 30 1 -4.4479 -6.2948 1.1108 31 1 -4.5372 -4.5507 1.4556 32 1 -2.2810 -7.1850 0.2282 33 1 -0.9090 -6.2462 0.2727 34 1 0.5251 -3.8406 -1.7587 35 1 2.0342 -2.8697 -2.1850 36 1 3.1624 -3.6920 -0.0667 37 1 1.6538 -4.6633 0.3602 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724865260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:34 Heat of formation + Delta-G solvation = -68.802121 kcal Electronic energy + Delta-G solvation = -18332.251481 eV Core-core repulsion = 15496.328077 eV Total energy + Delta-G solvation = -2835.923404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.45096 -37.34280 -35.50778 -33.69829 -32.23863 -31.23603 -28.41956 -26.24190 -25.29040 -23.65806 -22.87909 -21.04257 -19.41466 -19.00289 -16.73600 -16.17056 -15.91077 -15.67575 -15.26479 -14.78203 -14.59289 -14.09567 -13.84627 -13.32776 -12.99860 -12.76614 -12.27711 -11.93721 -11.74716 -11.41375 -11.18997 -10.91835 -10.82176 -10.47354 -10.46806 -10.12964 -10.03882 -9.51776 -9.33821 -9.12131 -8.71093 -8.56739 -8.32079 -7.98451 -6.09278 -4.19729 3.22336 3.29353 3.32814 4.01081 4.27100 4.42023 4.79282 4.93881 4.98846 5.13942 5.24736 5.48336 5.55616 5.58907 5.62039 5.69549 5.79461 5.94292 6.15317 6.24449 6.32359 6.54560 6.58369 6.67160 6.85751 6.93459 7.10595 7.27360 7.37596 7.46289 7.49287 7.53017 7.75201 7.90047 8.17299 8.48963 8.81495 9.42000 10.87411 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033318 B = 0.006465 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.175072 B = 4330.175000 C = 4775.149526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.483 4.483 8 H 0.065 0.935 9 C 0.050 3.950 10 C 0.105 3.895 11 O -0.396 6.396 12 C 0.100 3.900 13 H 0.055 0.945 14 C -0.169 4.169 15 C 0.067 3.933 16 O -0.371 6.371 17 C 0.072 3.928 18 C 0.063 3.937 19 H 0.044 0.956 20 N -0.829 5.829 21 C -0.199 4.199 22 C -0.202 4.202 23 H 0.262 0.738 24 H 0.098 0.902 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.332 0.668 33 H 0.353 0.647 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.045 -7.471 2.599 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.049 3.951 10 C 0.030 3.970 11 O -0.316 6.316 12 C 0.041 3.959 13 H 0.073 0.927 14 C -0.207 4.207 15 C -0.010 4.010 16 O -0.290 6.290 17 C -0.006 4.006 18 C -0.049 4.049 19 H 0.062 0.938 20 N -0.360 5.360 21 C -0.237 4.237 22 C -0.239 4.239 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.049 0.951 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.168 0.832 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.199 -7.567 3.461 11.003 hybrid contribution 0.480 1.460 -1.212 1.957 sum -6.719 -6.108 2.250 9.355 Atomic orbital electron populations 1.69806 1.05949 1.26797 1.50171 1.25043 0.95016 0.99435 0.94123 0.86436 0.79795 0.82682 0.78288 1.20460 1.21074 1.19705 1.20642 0.92878 0.88756 1.49731 0.91731 1.19031 0.91851 0.89919 0.94277 1.22585 0.95931 0.79750 0.98724 1.87747 1.37817 1.34517 1.71538 1.21825 0.87697 0.95509 0.90908 0.92662 1.22583 0.98541 1.03291 0.96319 1.22511 0.92191 0.89600 0.96716 1.87898 1.75446 1.40965 1.24645 1.22556 0.94320 1.00964 0.82710 1.22024 0.93990 0.91173 0.97761 0.93777 1.58585 1.07276 1.06026 1.64162 1.22892 1.01631 1.06918 0.92290 1.22797 0.97392 1.00401 1.03298 0.92715 0.88421 0.95102 0.89521 0.91231 0.89165 0.93800 0.89125 0.93076 0.85697 0.83221 0.91395 0.91160 0.91393 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.11 10.30 55.43 0.57 -23.53 16 2 C 0.07 1.75 5.40 -17.82 -0.10 1.66 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.48 -13.18 9.06 -34.44 -0.31 -13.49 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.05 1.26 2.46 -155.66 -0.38 0.88 16 10 C 0.10 2.52 4.75 37.16 0.18 2.70 16 11 O -0.40 -8.22 7.44 -35.23 -0.26 -8.48 16 12 C 0.10 1.74 2.45 -26.55 -0.07 1.67 16 13 H 0.06 0.99 7.90 -51.93 -0.41 0.58 16 14 C -0.17 -2.75 5.48 -26.60 -0.15 -2.90 16 15 C 0.07 0.92 6.84 37.20 0.25 1.18 16 16 O -0.37 -5.48 10.67 -35.23 -0.38 -5.86 16 17 C 0.07 0.93 6.48 37.21 0.24 1.17 16 18 C 0.06 0.92 3.38 -67.57 -0.23 0.69 16 19 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 20 N -0.83 -11.78 8.57 -4.55 -0.04 -11.81 16 21 C -0.20 -4.68 9.67 -26.69 -0.26 -4.94 16 22 C -0.20 -4.60 9.63 -26.69 -0.26 -4.85 16 23 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 24 H 0.10 2.57 5.94 -51.93 -0.31 2.26 16 25 H 0.03 0.77 7.48 -51.93 -0.39 0.38 16 26 H 0.09 1.52 7.76 -51.93 -0.40 1.11 16 27 H 0.07 1.18 7.55 -51.93 -0.39 0.78 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.33 3.89 9.07 -39.29 -0.36 3.53 16 33 H 0.35 5.47 8.17 -39.29 -0.32 5.15 16 34 H 0.07 1.54 7.85 -51.92 -0.41 1.13 16 35 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.08 1.68 7.48 -51.93 -0.39 1.29 16 LS Contribution 295.76 15.07 4.46 4.46 Total: -1.00 -27.92 295.76 -7.62 -35.54 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.88 Total: 10.29 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.07 Total: -16.24 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.53 Total: -35.35 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.64 Total: -14.34 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.92 -7.62 -35.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724865260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.258 kcal (2) G-P(sol) polarization free energy of solvation -27.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds