Wall clock time and date at job start Mon Mar 30 2020 03:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48503 * 109.46954 * 269.99447 * 3 2 1 5 5 H 1.48493 * 109.47327 * 29.99604 * 3 2 1 6 6 H 1.48501 * 109.46964 * 150.00094 * 3 2 1 7 7 C 1.37879 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00403 * 184.70034 * 7 2 1 9 9 C 1.50702 * 119.99840 * 4.70568 * 7 2 1 10 10 C 1.53003 * 115.54839 * 324.45886 * 9 7 2 11 11 O 1.42902 * 109.47007 * 185.80556 * 10 9 7 12 12 C 1.42895 * 114.00227 * 175.01378 * 11 10 9 13 13 H 1.09006 * 109.54159 * 35.05509 * 12 11 10 14 14 C 1.53175 * 109.54843 * 274.88337 * 12 11 10 15 15 C 1.53087 * 109.16718 * 183.15193 * 14 12 11 16 16 O 1.42907 * 109.41793 * 57.60353 * 15 14 12 17 17 C 1.42906 * 114.09670 * 298.84635 * 16 15 14 18 18 C 1.53093 * 109.41432 * 61.15531 * 17 16 15 19 19 H 1.09002 * 109.51971 * 182.48663 * 18 17 16 20 20 N 1.46901 * 109.52109 * 62.29727 * 18 17 16 21 21 C 1.52999 * 117.49970 * 110.13340 * 9 7 2 22 22 C 1.53005 * 117.49623 * 178.79228 * 9 7 2 23 23 H 0.97008 * 119.99753 * 5.00607 * 1 2 3 24 24 H 1.08991 * 109.47088 * 65.80838 * 10 9 7 25 25 H 1.09003 * 109.47159 * 305.80153 * 10 9 7 26 26 H 1.08999 * 109.51761 * 303.05596 * 14 12 11 27 27 H 1.08999 * 109.52510 * 63.24074 * 14 12 11 28 28 H 1.09000 * 109.48406 * 177.59143 * 15 14 12 29 29 H 1.09006 * 109.47945 * 297.61113 * 15 14 12 30 30 H 1.08992 * 109.48025 * 181.13771 * 17 16 15 31 31 H 1.08998 * 109.48044 * 301.17372 * 17 16 15 32 32 H 1.00899 * 110.99919 * 65.26382 * 20 18 17 33 33 H 1.00901 * 110.99399 * 189.21410 * 20 18 17 34 34 H 1.09008 * 117.49405 * 215.00236 * 21 9 7 35 35 H 1.08998 * 117.50145 * 0.02562 * 21 9 7 36 36 H 1.08994 * 117.49941 * 359.97050 * 22 9 7 37 37 H 1.09004 * 117.49671 * 145.00047 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0817 -1.1958 0.0772 9 6 1.2546 -2.4970 -0.1060 10 6 -0.1018 -2.5374 0.6008 11 8 -0.6346 -3.8617 0.5337 12 6 -1.8510 -4.0365 1.2628 13 1 -2.4460 -3.1251 1.2031 14 6 -1.5302 -4.3437 2.7288 15 6 -2.8354 -4.6069 3.4844 16 8 -3.5356 -5.6859 2.8618 17 6 -3.9035 -5.4362 1.5036 18 6 -2.6411 -5.2064 0.6685 19 1 -2.9215 -4.9722 -0.3585 20 7 -1.8121 -6.4190 0.6881 21 6 1.3975 -3.2901 -1.4065 22 6 2.0783 -3.7862 -0.1284 23 1 -0.4850 0.8369 -0.0733 24 1 -0.7869 -1.8450 0.1120 25 1 0.0236 -2.2487 1.6444 26 1 -0.8926 -5.2260 2.7849 27 1 -1.0160 -3.4926 3.1753 28 1 -2.6105 -4.8680 4.5185 29 1 -3.4551 -3.7104 3.4625 30 1 -4.4479 -6.2948 1.1108 31 1 -4.5372 -4.5507 1.4556 32 1 -2.2810 -7.1850 0.2282 33 1 -0.9090 -6.2462 0.2727 34 1 0.5251 -3.8406 -1.7587 35 1 2.0342 -2.8697 -2.1850 36 1 3.1624 -3.6920 -0.0667 37 1 1.6538 -4.6633 0.3602 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724865260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:34 Heat of formation + Delta-G solvation = -87.471745 kcal Electronic energy + Delta-G solvation = -18333.061057 eV Core-core repulsion = 15496.328077 eV Total energy + Delta-G solvation = -2836.732980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72400 -39.01997 -37.13009 -34.97326 -34.25709 -32.53358 -29.56180 -28.15175 -27.14517 -25.01684 -24.09464 -22.91868 -20.94556 -20.67158 -18.43840 -17.70354 -17.26755 -16.94076 -16.63134 -16.49458 -15.96378 -15.65345 -15.42227 -14.92377 -14.64163 -14.04867 -13.67443 -13.41445 -13.39110 -13.07731 -12.81707 -12.72210 -12.34389 -12.22094 -12.00355 -11.83857 -11.42354 -11.30429 -10.99608 -10.65103 -10.53628 -10.41229 -9.88760 -9.46350 -8.09867 -6.28614 1.41149 1.42458 1.52694 2.37500 2.82478 2.96413 3.01980 3.62640 3.65610 3.76726 3.92314 4.05324 4.17925 4.38268 4.44737 4.46592 4.59237 4.60932 4.65828 4.68664 4.74328 4.90571 4.99588 5.00871 5.07880 5.22529 5.28781 5.43670 5.56913 5.62027 5.90029 6.14905 6.26296 6.33315 6.61824 6.68013 6.80448 7.35389 8.84875 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033318 B = 0.006465 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.175072 B = 4330.175000 C = 4775.149526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.013 3.987 10 C 0.129 3.871 11 O -0.398 6.398 12 C 0.089 3.911 13 H 0.047 0.953 14 C -0.162 4.162 15 C 0.070 3.930 16 O -0.381 6.381 17 C 0.072 3.928 18 C 0.067 3.933 19 H 0.046 0.954 20 N -0.832 5.832 21 C -0.191 4.191 22 C -0.182 4.182 23 H 0.264 0.736 24 H 0.074 0.926 25 H 0.009 0.991 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.055 0.945 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.347 0.653 33 H 0.345 0.655 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 -7.985 2.717 11.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.013 3.987 10 C 0.053 3.947 11 O -0.318 6.318 12 C 0.030 3.970 13 H 0.065 0.935 14 C -0.201 4.201 15 C -0.006 4.006 16 O -0.300 6.300 17 C -0.006 4.006 18 C -0.045 4.045 19 H 0.064 0.936 20 N -0.364 5.364 21 C -0.229 4.229 22 C -0.219 4.219 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.027 0.973 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.126 0.874 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.802 -8.109 3.577 11.808 hybrid contribution 0.631 1.563 -1.249 2.098 sum -7.171 -6.547 2.328 9.985 Atomic orbital electron populations 1.69944 1.06951 1.27550 1.50209 1.25775 0.95875 1.02406 0.93655 0.85468 0.78606 0.78742 0.78384 1.19948 1.20525 1.19384 1.20894 0.92851 0.90262 1.50803 0.92445 1.19208 0.92976 0.90432 0.96076 1.22017 0.95105 0.80783 0.96745 1.87715 1.39364 1.32437 1.72315 1.22122 0.86543 0.96598 0.91715 0.93468 1.22496 0.99770 1.01990 0.95811 1.22547 0.90850 0.90125 0.97124 1.87890 1.75309 1.41335 1.25445 1.22722 0.93447 1.02781 0.81610 1.22015 0.94281 0.90180 0.98048 0.93643 1.58581 1.07007 1.06334 1.64431 1.22830 1.01841 1.06265 0.91923 1.22755 0.97405 0.99338 1.02394 0.92581 0.90829 0.97260 0.90791 0.92639 0.87402 0.92659 0.86644 0.91761 0.83928 0.84156 0.90719 0.91362 0.90915 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.86 10.30 21.45 0.22 -49.64 16 2 C 0.02 1.21 5.40 84.66 0.46 1.67 16 3 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.51 -28.20 9.06 25.60 0.23 -27.97 16 8 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 9 C 0.01 0.69 2.46 -52.92 -0.13 0.56 16 10 C 0.13 6.35 4.75 71.98 0.34 6.69 16 11 O -0.40 -16.60 7.44 -148.98 -1.11 -17.71 16 12 C 0.09 3.06 2.45 30.71 0.08 3.14 16 13 H 0.05 1.70 7.90 -2.38 -0.02 1.68 16 14 C -0.16 -5.23 5.48 30.68 0.17 -5.06 16 15 C 0.07 1.83 6.84 72.01 0.49 2.32 16 16 O -0.38 -10.34 10.67 -148.98 -1.59 -11.93 16 17 C 0.07 1.66 6.48 72.01 0.47 2.13 16 18 C 0.07 1.87 3.38 45.01 0.15 2.02 16 19 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 20 N -0.83 -22.28 8.57 -168.30 -1.44 -23.72 16 21 C -0.19 -8.88 9.67 30.62 0.30 -8.58 16 22 C -0.18 -8.18 9.63 30.62 0.29 -7.89 16 23 H 0.26 13.74 8.32 -92.70 -0.77 12.97 16 24 H 0.07 3.98 5.94 -2.39 -0.01 3.97 16 25 H 0.01 0.48 7.48 -2.39 -0.02 0.46 16 26 H 0.07 2.56 7.76 -2.39 -0.02 2.54 16 27 H 0.05 1.91 7.55 -2.39 -0.02 1.89 16 28 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.35 7.39 9.07 -89.69 -0.81 6.57 16 33 H 0.35 10.31 8.17 -89.69 -0.73 9.58 16 34 H 0.07 3.33 7.85 -2.38 -0.02 3.31 16 35 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.09 3.69 7.48 -2.39 -0.02 3.68 16 Total: -1.00 -58.84 295.76 0.47 -58.36 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.48 Total: 31.18 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 2.85 Total: -30.97 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -1.22 Total: -73.36 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -2.70 Total: -29.63 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -58.84 0.47 -58.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724865260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.109 kcal (2) G-P(sol) polarization free energy of solvation -58.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds