Wall clock time and date at job start Mon Mar 30 2020 03:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86793 * 120.00074 * 2 1 4 4 H 1.48507 * 109.47115 * 269.99633 * 3 2 1 5 5 H 1.48496 * 109.47208 * 29.99930 * 3 2 1 6 6 H 1.48507 * 109.46966 * 150.00267 * 3 2 1 7 7 C 1.37881 * 119.99430 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99768 * 184.54664 * 7 2 1 9 9 C 1.50696 * 120.00258 * 4.55795 * 7 2 1 10 10 C 1.53000 * 115.54888 * 324.40559 * 9 7 2 11 11 O 1.42904 * 109.47085 * 305.75907 * 10 9 7 12 12 C 1.42897 * 114.00204 * 184.98976 * 11 10 9 13 13 H 1.09001 * 109.54322 * 325.32314 * 12 11 10 14 14 C 1.53186 * 109.54240 * 85.58304 * 12 11 10 15 15 C 1.53095 * 109.16034 * 176.84900 * 14 12 11 16 16 O 1.42909 * 109.41576 * 302.39231 * 15 14 12 17 17 C 1.42895 * 114.09554 * 61.16282 * 16 15 14 18 18 C 1.53092 * 109.41545 * 298.83752 * 17 16 15 19 19 H 1.09002 * 109.52283 * 177.51534 * 18 17 16 20 20 N 1.46899 * 109.52648 * 297.64463 * 18 17 16 21 21 C 1.52995 * 117.50490 * 110.08008 * 9 7 2 22 22 C 1.53001 * 117.50073 * 178.73945 * 9 7 2 23 23 H 0.96999 * 119.99359 * 5.00281 * 1 2 3 24 24 H 1.09007 * 109.47499 * 185.75960 * 10 9 7 25 25 H 1.08994 * 109.47599 * 65.75605 * 10 9 7 26 26 H 1.08999 * 109.52519 * 296.75737 * 14 12 11 27 27 H 1.08999 * 109.51867 * 56.88398 * 14 12 11 28 28 H 1.08997 * 109.48454 * 62.37767 * 15 14 12 29 29 H 1.08998 * 109.47687 * 182.41294 * 15 14 12 30 30 H 1.09000 * 109.48331 * 178.86101 * 17 16 15 31 31 H 1.09002 * 109.48722 * 58.81925 * 17 16 15 32 32 H 1.00901 * 110.99624 * 299.99876 * 20 18 17 33 33 H 1.00898 * 110.99674 * 63.94602 * 20 18 17 34 34 H 1.09008 * 117.50098 * 215.00351 * 21 9 7 35 35 H 1.09005 * 117.49946 * 0.02562 * 21 9 7 36 36 H 1.09001 * 117.49661 * 359.97217 * 22 9 7 37 37 H 1.08994 * 117.50211 * 144.96547 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0820 -1.1957 0.0747 9 6 1.2545 -2.4972 -0.1026 10 6 -0.0997 -2.5371 0.6083 11 8 0.0689 -2.1584 1.9759 12 6 -1.1198 -2.2709 2.7610 13 1 -1.9864 -2.0234 2.1479 14 6 -1.2536 -3.7038 3.2859 15 6 -2.4862 -3.7949 4.1893 16 8 -2.3635 -2.8528 5.2568 17 6 -2.2824 -1.4922 4.8278 18 6 -1.0416 -1.3085 3.9501 19 1 -1.0020 -0.2819 3.5857 20 7 0.1642 -1.5967 4.7380 21 6 1.3935 -3.2914 -1.4028 22 6 2.0781 -3.7864 -0.1265 23 1 -0.4849 0.8369 -0.0733 24 1 -0.5066 -3.5471 0.5585 25 1 -0.7862 -1.8444 0.1216 26 1 -1.3654 -4.3902 2.4466 27 1 -0.3627 -3.9675 3.8559 28 1 -3.3805 -3.5709 3.6078 29 1 -2.5622 -4.8017 4.5999 30 1 -2.2116 -0.8401 5.6983 31 1 -3.1740 -1.2380 4.2545 32 1 0.2347 -0.9767 5.5310 33 1 0.1824 -2.5620 5.0310 34 1 0.5200 -3.8423 -1.7519 35 1 2.0277 -2.8716 -2.1837 36 1 3.1625 -3.6920 -0.0681 37 1 1.6555 -4.6628 0.3646 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724865263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:36 Heat of formation + Delta-G solvation = -81.152534 kcal Electronic energy + Delta-G solvation = -18575.505746 eV Core-core repulsion = 15739.046788 eV Total energy + Delta-G solvation = -2836.458958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80879 -38.86021 -37.12513 -34.96315 -34.08365 -32.56335 -29.49298 -27.83845 -27.07072 -24.95793 -24.25453 -22.93478 -21.00224 -20.49842 -18.34600 -17.94345 -17.10857 -17.09909 -16.71297 -16.21621 -15.77857 -15.65234 -15.56932 -14.89236 -14.32304 -14.10868 -13.68827 -13.38094 -13.24927 -12.94392 -12.91059 -12.65864 -12.35120 -12.16050 -12.01559 -11.59489 -11.50836 -11.32603 -10.94921 -10.74503 -10.52920 -10.11386 -9.86051 -9.31884 -7.88245 -6.06678 1.41937 1.44397 1.53264 2.47225 2.81950 2.96961 3.24304 3.69466 3.78101 3.82274 3.88556 3.95971 4.18021 4.33591 4.43166 4.44367 4.51369 4.54754 4.65150 4.71767 4.76198 4.94093 4.94889 4.98485 5.08010 5.12550 5.27045 5.39652 5.53771 5.64845 6.00670 6.08969 6.36590 6.45721 6.72124 6.81447 7.08492 7.54909 9.02420 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.008649 C = 0.007007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.294724 B = 3236.628658 C = 3995.157773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.039 3.961 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.279 1.279 7 C -0.498 4.498 8 H 0.040 0.960 9 C 0.016 3.984 10 C 0.123 3.877 11 O -0.351 6.351 12 C 0.091 3.909 13 H 0.043 0.957 14 C -0.174 4.174 15 C 0.066 3.934 16 O -0.390 6.390 17 C 0.036 3.964 18 C 0.070 3.930 19 H 0.069 0.931 20 N -0.833 5.833 21 C -0.194 4.194 22 C -0.195 4.195 23 H 0.255 0.745 24 H 0.003 0.997 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.344 0.656 33 H 0.342 0.658 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.096 -4.999 8.041 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.162 4.162 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.535 4.535 8 H 0.058 0.942 9 C 0.016 3.984 10 C 0.047 3.953 11 O -0.269 6.269 12 C 0.032 3.968 13 H 0.061 0.939 14 C -0.213 4.213 15 C -0.010 4.010 16 O -0.309 6.309 17 C -0.043 4.043 18 C -0.043 4.043 19 H 0.087 0.913 20 N -0.364 5.364 21 C -0.232 4.232 22 C -0.232 4.232 23 H 0.065 0.935 24 H 0.021 0.979 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.654 -4.657 7.711 11.199 hybrid contribution -0.253 0.680 -0.022 0.726 sum -6.907 -3.977 7.689 11.074 Atomic orbital electron populations 1.69988 1.06432 1.26310 1.50136 1.25452 0.95647 1.01250 0.93832 0.85719 0.78649 0.80247 0.77891 1.20097 1.20954 1.20389 1.20617 0.91920 0.90650 1.50323 0.94170 1.19089 0.93999 0.90268 0.95045 1.21945 0.96958 0.93970 0.82467 1.88122 1.30959 1.87723 1.20094 1.21995 0.88940 0.94163 0.91726 0.93941 1.22726 1.00217 0.97672 1.00642 1.22688 0.95698 0.94061 0.88586 1.87871 1.94192 1.15880 1.32923 1.23459 0.97247 0.83749 0.99834 1.21997 0.89924 0.99121 0.93212 0.91297 1.58647 1.39962 1.09470 1.28341 1.22980 1.02189 1.06019 0.92027 1.22870 0.98248 0.99527 1.02562 0.93498 0.97881 0.91454 0.90952 0.91044 0.92232 0.86428 0.86815 0.92023 0.84286 0.84319 0.89883 0.90589 0.90933 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.81 10.16 21.45 0.22 -49.60 16 2 C 0.04 2.16 5.35 84.65 0.45 2.61 16 3 Si 0.95 45.03 29.54 68.60 2.03 47.05 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.50 -28.58 8.78 25.60 0.22 -28.36 16 8 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 9 C 0.02 0.84 2.20 -52.93 -0.12 0.73 16 10 C 0.12 6.03 4.62 71.98 0.33 6.36 16 11 O -0.35 -16.92 9.31 -148.98 -1.39 -18.30 16 12 C 0.09 3.40 2.45 30.72 0.08 3.48 16 13 H 0.04 1.63 7.89 -2.39 -0.02 1.61 16 14 C -0.17 -5.22 5.32 30.69 0.16 -5.06 16 15 C 0.07 1.54 6.84 72.01 0.49 2.03 16 16 O -0.39 -9.95 10.34 -148.98 -1.54 -11.50 16 17 C 0.04 0.90 6.45 72.01 0.46 1.37 16 18 C 0.07 2.33 3.43 45.01 0.15 2.49 16 19 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 20 N -0.83 -27.30 9.06 -168.30 -1.53 -28.82 16 21 C -0.19 -8.76 9.96 30.61 0.30 -8.46 16 22 C -0.19 -8.73 9.92 30.62 0.30 -8.43 16 23 H 0.26 13.68 8.32 -92.71 -0.77 12.91 16 24 H 0.00 0.15 7.46 -2.38 -0.02 0.13 16 25 H 0.07 3.62 5.93 -2.39 -0.01 3.60 16 26 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 27 H 0.07 2.25 6.74 -2.39 -0.02 2.23 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.34 9.39 9.04 -89.69 -0.81 8.58 16 33 H 0.34 10.61 6.78 -89.70 -0.61 10.00 16 34 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 35 H 0.08 3.43 8.14 -2.38 -0.02 3.41 16 36 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -63.00 295.90 0.29 -62.71 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.35 Total: 29.70 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 2.85 Total: -31.24 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.31 Total: -78.42 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -2.93 Total: -29.80 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -63.00 0.29 -62.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724865263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.447 kcal (2) G-P(sol) polarization free energy of solvation -62.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds