Wall clock time and date at job start Mon Mar 30 2020 03:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48503 * 109.47327 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47373 * 299.99742 * 3 2 1 6 6 H 1.48505 * 109.47254 * 59.99768 * 3 2 1 7 7 C 1.38810 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99845 * 158.10777 * 7 2 1 9 9 N 1.36940 * 119.99785 * 338.10895 * 7 2 1 10 10 C 1.46493 * 120.00271 * 324.72842 * 9 7 2 11 11 C 1.53000 * 109.47351 * 270.00456 * 10 9 7 12 12 O 1.42904 * 109.47539 * 64.99530 * 11 10 9 13 13 C 1.42892 * 114.00265 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.83262 * 333.65419 * 13 12 11 15 15 C 1.54810 * 110.91032 * 210.00211 * 13 12 11 16 16 C 1.54102 * 104.30568 * 220.99068 * 15 13 12 17 17 O 1.43743 * 107.29480 * 357.90635 * 16 15 13 18 18 C 1.44382 * 106.97400 * 26.51170 * 17 16 15 19 19 C 1.46503 * 119.99591 * 144.73157 * 9 7 2 20 20 C 1.52996 * 117.50097 * 3.23663 * 19 9 7 21 21 C 1.52995 * 117.49863 * 294.57418 * 19 9 7 22 22 H 0.96999 * 120.00580 * 355.90506 * 1 2 3 23 23 H 1.08998 * 109.47616 * 149.99872 * 10 9 7 24 24 H 1.09002 * 109.47149 * 29.99973 * 10 9 7 25 25 H 1.09001 * 109.47145 * 305.00184 * 11 10 9 26 26 H 1.08996 * 109.47391 * 184.99799 * 11 10 9 27 27 H 1.08996 * 110.49248 * 102.24664 * 15 13 12 28 28 H 1.09010 * 110.48651 * 339.73065 * 15 13 12 29 29 H 1.09007 * 109.87713 * 117.33014 * 16 15 13 30 30 H 1.09003 * 109.88005 * 238.47776 * 16 15 13 31 31 H 1.08996 * 110.61754 * 78.44838 * 18 17 16 32 32 H 1.09006 * 110.61336 * 201.28344 * 18 17 16 33 33 H 1.08997 * 115.54696 * 148.90796 * 19 9 7 34 34 H 1.09004 * 117.50024 * 0.02562 * 20 19 9 35 35 H 1.09000 * 117.50062 * 145.02131 * 20 19 9 36 36 H 1.08998 * 117.50019 * 214.98321 * 21 19 9 37 37 H 1.08996 * 117.50209 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0318 -1.2359 -0.3482 9 7 1.3997 -2.3451 0.4432 10 6 0.4449 -2.2830 1.5526 11 6 1.1881 -2.4728 2.8764 12 8 2.0802 -1.3757 3.0835 13 6 2.8270 -1.4553 4.2991 14 1 2.2910 -2.0414 5.0457 15 6 3.1567 -0.0422 4.8385 16 6 4.6113 -0.1540 5.3350 17 8 5.0268 -1.5158 5.1375 18 6 4.2417 -2.0419 4.0460 19 6 1.7013 -3.6300 -0.1926 20 6 2.7626 -3.6410 -1.2946 21 6 1.2842 -3.8105 -1.6535 22 1 -0.4851 0.8378 0.0600 23 1 -0.2984 -3.0718 1.4369 24 1 -0.0517 -1.3127 1.5506 25 1 1.7568 -3.4021 2.8439 26 1 0.4687 -2.5154 3.6941 27 1 2.4914 0.2167 5.6621 28 1 3.0814 0.6976 4.0414 29 1 5.2514 0.5159 4.7606 30 1 4.6620 0.0992 6.3940 31 1 4.6335 -1.6957 3.0896 32 1 4.2202 -3.1313 4.0789 33 1 1.6431 -4.5020 0.4588 34 1 3.2367 -2.6923 -1.5463 35 1 3.4024 -4.5204 -1.3685 36 1 0.9519 -4.8013 -1.9633 37 1 0.7857 -2.9731 -2.1417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724943461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:46 Heat of formation + Delta-G solvation = -38.128923 kcal Electronic energy + Delta-G solvation = -18350.288076 eV Core-core repulsion = 15515.694761 eV Total energy + Delta-G solvation = -2834.593314 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23943 -37.25871 -36.26989 -33.42163 -31.37892 -30.47804 -28.55647 -27.41857 -24.21981 -22.54155 -21.65338 -21.21407 -20.92155 -19.62133 -16.82071 -16.35264 -16.18816 -15.32964 -15.22822 -14.70962 -14.44350 -13.91876 -13.73050 -13.22318 -13.08797 -12.41467 -12.08961 -11.80584 -11.63610 -11.32936 -11.10714 -10.86388 -10.66967 -10.60805 -10.48295 -10.17758 -10.02386 -9.65303 -9.59187 -9.57329 -9.25168 -8.77875 -8.35745 -6.49847 -5.69284 -3.27340 3.41836 3.49773 3.53353 3.93131 4.51027 4.56516 4.80512 4.96731 5.01404 5.15675 5.27201 5.38184 5.45883 5.56771 5.80367 5.88064 5.91509 5.99009 6.04428 6.08698 6.12970 6.18329 6.23448 6.33132 6.50591 6.54112 6.69262 6.70619 6.96550 7.06834 7.24909 7.65013 7.88939 8.01018 8.57006 9.22952 9.87747 10.40815 11.28312 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.009370 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.257853 B = 2987.607385 C = 3690.249190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.016 3.984 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.234 4.234 8 H 0.062 0.938 9 N -0.546 5.546 10 C 0.142 3.858 11 C 0.047 3.953 12 O -0.332 6.332 13 C 0.053 3.947 14 H 0.066 0.934 15 C -0.158 4.158 16 C 0.051 3.949 17 O -0.383 6.383 18 C 0.028 3.972 19 C 0.119 3.881 20 C -0.196 4.196 21 C -0.222 4.222 22 H 0.251 0.749 23 H 0.043 0.957 24 H 0.110 0.890 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 -3.693 8.022 9.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.183 4.183 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.364 4.364 8 H 0.079 0.921 9 N -0.262 5.262 10 C 0.015 3.985 11 C -0.032 4.032 12 O -0.250 6.250 13 C -0.006 4.006 14 H 0.084 0.916 15 C -0.195 4.195 16 C -0.026 4.026 17 O -0.302 6.302 18 C -0.049 4.049 19 C 0.010 3.990 20 C -0.234 4.234 21 C -0.263 4.263 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.127 0.873 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.946 -3.482 7.972 9.552 hybrid contribution 0.239 0.750 0.066 0.790 sum 4.186 -2.732 8.038 9.465 Atomic orbital electron populations 1.70018 1.05520 1.25662 1.52174 1.24963 0.94826 0.98425 1.00105 0.86366 0.79861 0.84367 0.76966 1.20227 1.22173 1.21495 1.18913 0.93844 0.85297 1.38322 0.92061 1.43331 1.48632 1.01518 1.32731 1.21079 0.90502 1.04059 0.82848 1.23514 0.91448 0.88388 0.99877 1.88286 1.55531 1.44744 1.36440 1.23550 0.92679 0.95493 0.88896 0.91576 1.22966 0.96346 0.98494 1.01720 1.23083 0.94230 0.84483 1.00832 1.88813 1.62041 1.26129 1.53222 1.24079 0.90757 0.99152 0.90865 1.21218 1.00495 0.90252 0.87016 1.23018 0.91897 1.01803 1.06683 1.23370 0.97383 1.00570 1.05009 0.93860 0.93869 0.87308 0.95246 0.95381 0.90463 0.89211 0.92324 0.90144 0.90718 0.89296 0.89835 0.88473 0.90895 0.91338 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 11.33 55.49 0.63 -24.72 16 2 C 0.02 0.44 4.97 -17.43 -0.09 0.35 16 3 Si 0.89 22.03 29.61 -169.99 -5.03 16.99 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.27 8.13 -15.06 -0.12 -6.39 16 8 H 0.06 1.68 6.56 -52.49 -0.34 1.34 16 9 N -0.55 -13.25 2.76 -165.67 -0.46 -13.71 16 10 C 0.14 3.21 5.76 -4.05 -0.02 3.19 16 11 C 0.05 0.91 6.12 37.16 0.23 1.13 16 12 O -0.33 -6.91 9.58 -35.23 -0.34 -7.25 16 13 C 0.05 0.89 3.64 -24.60 -0.09 0.80 16 14 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 15 C -0.16 -2.36 6.78 -25.20 -0.17 -2.53 16 16 C 0.05 0.69 7.70 37.73 0.29 0.98 16 17 O -0.38 -6.13 11.52 -35.23 -0.41 -6.54 16 18 C 0.03 0.46 7.46 38.34 0.29 0.75 16 19 C 0.12 2.53 6.56 -67.93 -0.45 2.09 16 20 C -0.20 -3.89 9.80 -26.70 -0.26 -4.15 16 21 C -0.22 -4.53 10.36 -26.70 -0.28 -4.81 16 22 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16 23 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 24 H 0.11 2.84 5.36 -51.93 -0.28 2.57 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.51 8.08 -51.92 -0.42 1.09 16 29 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.10 2.12 6.37 -51.93 -0.33 1.79 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -29.18 303.52 -7.69 -36.86 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.98 Total: 2.37 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -0.67 Total: -8.59 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.17 Total: -38.42 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.74 Total: -13.79 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.18 -7.69 -36.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724943461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.267 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds