Wall clock time and date at job start Mon Mar 30 2020 03:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48503 * 109.47327 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47373 * 299.99742 * 3 2 1 6 6 H 1.48505 * 109.47254 * 59.99768 * 3 2 1 7 7 C 1.38810 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99845 * 158.10777 * 7 2 1 9 9 N 1.36940 * 119.99785 * 338.10895 * 7 2 1 10 10 C 1.46493 * 120.00271 * 324.72842 * 9 7 2 11 11 C 1.53000 * 109.47351 * 270.00456 * 10 9 7 12 12 O 1.42904 * 109.47539 * 64.99530 * 11 10 9 13 13 C 1.42892 * 114.00265 * 179.97438 * 12 11 10 14 14 H 1.08999 * 110.83262 * 333.65419 * 13 12 11 15 15 C 1.54810 * 110.91032 * 210.00211 * 13 12 11 16 16 C 1.54102 * 104.30568 * 220.99068 * 15 13 12 17 17 O 1.43743 * 107.29480 * 357.90635 * 16 15 13 18 18 C 1.44382 * 106.97400 * 26.51170 * 17 16 15 19 19 C 1.46503 * 119.99591 * 144.73157 * 9 7 2 20 20 C 1.52996 * 117.50097 * 3.23663 * 19 9 7 21 21 C 1.52995 * 117.49863 * 294.57418 * 19 9 7 22 22 H 0.96999 * 120.00580 * 355.90506 * 1 2 3 23 23 H 1.08998 * 109.47616 * 149.99872 * 10 9 7 24 24 H 1.09002 * 109.47149 * 29.99973 * 10 9 7 25 25 H 1.09001 * 109.47145 * 305.00184 * 11 10 9 26 26 H 1.08996 * 109.47391 * 184.99799 * 11 10 9 27 27 H 1.08996 * 110.49248 * 102.24664 * 15 13 12 28 28 H 1.09010 * 110.48651 * 339.73065 * 15 13 12 29 29 H 1.09007 * 109.87713 * 117.33014 * 16 15 13 30 30 H 1.09003 * 109.88005 * 238.47776 * 16 15 13 31 31 H 1.08996 * 110.61754 * 78.44838 * 18 17 16 32 32 H 1.09006 * 110.61336 * 201.28344 * 18 17 16 33 33 H 1.08997 * 115.54696 * 148.90796 * 19 9 7 34 34 H 1.09004 * 117.50024 * 0.02562 * 20 19 9 35 35 H 1.09000 * 117.50062 * 145.02131 * 20 19 9 36 36 H 1.08998 * 117.50019 * 214.98321 * 21 19 9 37 37 H 1.08996 * 117.50209 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0318 -1.2359 -0.3482 9 7 1.3997 -2.3451 0.4432 10 6 0.4449 -2.2830 1.5526 11 6 1.1881 -2.4728 2.8764 12 8 2.0802 -1.3757 3.0835 13 6 2.8270 -1.4553 4.2991 14 1 2.2910 -2.0414 5.0457 15 6 3.1567 -0.0422 4.8385 16 6 4.6113 -0.1540 5.3350 17 8 5.0268 -1.5158 5.1375 18 6 4.2417 -2.0419 4.0460 19 6 1.7013 -3.6300 -0.1926 20 6 2.7626 -3.6410 -1.2946 21 6 1.2842 -3.8105 -1.6535 22 1 -0.4851 0.8378 0.0600 23 1 -0.2984 -3.0718 1.4369 24 1 -0.0517 -1.3127 1.5506 25 1 1.7568 -3.4021 2.8439 26 1 0.4687 -2.5154 3.6941 27 1 2.4914 0.2167 5.6621 28 1 3.0814 0.6976 4.0414 29 1 5.2514 0.5159 4.7606 30 1 4.6620 0.0992 6.3940 31 1 4.6335 -1.6957 3.0896 32 1 4.2202 -3.1313 4.0789 33 1 1.6431 -4.5020 0.4588 34 1 3.2367 -2.6923 -1.5463 35 1 3.4024 -4.5204 -1.3685 36 1 0.9519 -4.8013 -1.9633 37 1 0.7857 -2.9731 -2.1417 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724943461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:46 Heat of formation + Delta-G solvation = -56.143383 kcal Electronic energy + Delta-G solvation = -18351.069241 eV Core-core repulsion = 15515.694761 eV Total energy + Delta-G solvation = -2835.374480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49988 -38.91680 -37.78117 -35.23401 -33.02557 -32.00921 -29.94009 -29.04195 -26.13732 -23.78818 -23.26802 -22.82676 -22.17780 -21.43229 -18.36560 -18.03765 -17.47903 -17.07503 -16.71081 -16.23383 -15.97311 -15.55755 -15.31817 -14.72273 -14.44879 -14.13951 -13.58862 -13.41456 -13.25353 -12.90626 -12.62084 -12.56976 -12.38865 -12.18297 -12.08731 -11.86793 -11.69977 -11.42302 -11.31991 -10.88992 -10.79110 -10.38860 -10.20000 -8.46182 -7.72047 -5.33598 1.42234 1.46082 1.54472 2.54224 2.65996 3.22500 3.25449 3.49519 3.53460 3.61325 3.85466 3.97547 4.20688 4.30390 4.32482 4.47073 4.49100 4.56654 4.68375 4.71753 4.75130 4.80571 4.89494 4.95483 4.97079 4.98848 5.05569 5.11071 5.39147 5.56949 5.72800 5.76450 5.84844 6.47379 6.65454 7.23770 7.94269 8.41291 9.19915 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.009370 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.257853 B = 2987.607385 C = 3690.249190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.028 4.028 3 Si 0.940 3.060 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.049 0.951 9 N -0.562 5.562 10 C 0.138 3.862 11 C 0.056 3.944 12 O -0.368 6.368 13 C 0.048 3.952 14 H 0.088 0.912 15 C -0.157 4.157 16 C 0.049 3.951 17 O -0.391 6.391 18 C 0.033 3.967 19 C 0.102 3.898 20 C -0.185 4.185 21 C -0.217 4.217 22 H 0.247 0.753 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 -5.094 9.370 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.225 4.225 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.067 0.933 9 N -0.279 5.279 10 C 0.012 3.988 11 C -0.023 4.023 12 O -0.287 6.287 13 C -0.011 4.011 14 H 0.106 0.894 15 C -0.195 4.195 16 C -0.027 4.027 17 O -0.310 6.310 18 C -0.044 4.044 19 C -0.006 4.006 20 C -0.223 4.223 21 C -0.258 4.258 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.734 -4.898 9.324 11.547 hybrid contribution 0.024 1.131 -0.353 1.186 sum 4.758 -3.766 8.971 10.831 Atomic orbital electron populations 1.70125 1.06397 1.25639 1.54135 1.25444 0.95345 1.00511 1.01165 0.85642 0.79014 0.81883 0.76471 1.19969 1.22517 1.21686 1.18927 0.93283 0.86530 1.36842 0.93338 1.43498 1.48756 1.01934 1.33714 1.21024 0.90872 1.02540 0.84340 1.23295 0.91802 0.88552 0.98620 1.88230 1.56257 1.45489 1.38691 1.23768 0.92526 0.96868 0.87972 0.89373 1.22996 0.97854 0.96971 1.01653 1.23250 0.93168 0.83508 1.02764 1.88805 1.62227 1.27210 1.52805 1.23981 0.90472 0.99990 0.89966 1.21552 1.01472 0.89853 0.87744 1.23017 0.91893 1.02070 1.05317 1.23279 0.97634 1.00881 1.04004 0.94412 0.92681 0.90877 0.93827 0.92903 0.88139 0.91756 0.92279 0.86996 0.93186 0.87778 0.86792 0.91115 0.87193 0.87930 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.66 11.33 21.65 0.25 -53.41 16 2 C -0.03 -1.59 4.97 84.86 0.42 -1.17 16 3 Si 0.94 46.32 29.61 68.60 2.03 48.35 16 4 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 6 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 7 C -0.23 -12.23 8.13 84.03 0.68 -11.55 16 8 H 0.05 2.72 6.56 -2.91 -0.02 2.70 16 9 N -0.56 -27.14 2.76 -678.07 -1.87 -29.01 16 10 C 0.14 6.22 5.76 86.38 0.50 6.72 16 11 C 0.06 2.07 6.12 71.98 0.44 2.51 16 12 O -0.37 -15.03 9.58 -148.98 -1.43 -16.45 16 13 C 0.05 1.50 3.64 31.98 0.12 1.62 16 14 H 0.09 2.38 7.83 -2.39 -0.02 2.36 16 15 C -0.16 -4.46 6.78 31.58 0.21 -4.25 16 16 C 0.05 1.24 7.70 72.35 0.56 1.80 16 17 O -0.39 -11.69 11.52 -148.98 -1.72 -13.41 16 18 C 0.03 1.02 7.46 72.75 0.54 1.56 16 19 C 0.10 4.14 6.56 44.99 0.30 4.44 16 20 C -0.18 -7.01 9.80 30.62 0.30 -6.71 16 21 C -0.22 -8.53 10.36 30.62 0.32 -8.22 16 22 H 0.25 14.07 8.32 -92.71 -0.77 13.30 16 23 H 0.05 2.27 8.07 -2.39 -0.02 2.25 16 24 H 0.07 3.90 5.36 -2.39 -0.01 3.88 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 27 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 2.15 8.08 -2.38 -0.02 2.13 16 29 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 30 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 33 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 34 H 0.07 3.07 6.37 -2.39 -0.02 3.06 16 35 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -63.57 303.52 2.68 -60.89 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.03 Total: 16.30 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 4.38 Total: -13.25 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.62 Total: -82.43 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -3.14 Total: -29.87 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -63.57 2.68 -60.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724943461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.751 kcal (2) G-P(sol) polarization free energy of solvation -63.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds