Wall clock time and date at job start Mon Mar 30 2020 03:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86810 * 119.99687 * 2 1 4 4 H 1.48498 * 109.46874 * 240.00284 * 3 2 1 5 5 H 1.48498 * 109.46812 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46832 * 120.00096 * 3 2 1 7 7 C 1.38807 * 120.00576 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00519 * 159.93013 * 7 2 1 9 9 N 1.36945 * 119.99685 * 339.92810 * 7 2 1 10 10 C 1.46495 * 120.00015 * 320.99935 * 9 7 2 11 11 C 1.53003 * 109.47100 * 269.99907 * 10 9 7 12 12 O 1.42902 * 109.46998 * 65.00288 * 11 10 9 13 13 C 1.42895 * 113.99597 * 180.02562 * 12 11 10 14 14 H 1.08998 * 110.46178 * 27.39194 * 13 12 11 15 15 C 1.54509 * 110.51222 * 149.99862 * 13 12 11 16 16 C 1.54471 * 104.06861 * 118.64224 * 15 13 12 17 17 O 1.44427 * 104.80130 * 23.97807 * 16 15 13 18 18 C 1.44425 * 105.27769 * 319.49092 * 17 16 15 19 19 C 1.46497 * 119.99934 * 140.99885 * 9 7 2 20 20 C 1.53005 * 117.52049 * 345.87909 * 19 9 7 21 21 C 1.53002 * 117.50023 * 54.51004 * 19 9 7 22 22 H 0.96998 * 119.99836 * 355.02908 * 1 2 3 23 23 H 1.09007 * 109.47159 * 30.00043 * 10 9 7 24 24 H 1.09000 * 109.47296 * 149.99475 * 10 9 7 25 25 H 1.09004 * 109.46990 * 185.00003 * 11 10 9 26 26 H 1.08993 * 109.47039 * 304.99393 * 11 10 9 27 27 H 1.09005 * 110.51506 * 237.29281 * 15 13 12 28 28 H 1.09000 * 110.51127 * 359.97438 * 15 13 12 29 29 H 1.08993 * 110.37677 * 142.80895 * 16 15 13 30 30 H 1.08994 * 110.37404 * 265.04429 * 16 15 13 31 31 H 1.08998 * 110.37112 * 281.68296 * 18 17 16 32 32 H 1.08996 * 110.37422 * 159.33731 * 18 17 16 33 33 H 1.09001 * 115.55033 * 200.17933 * 19 9 7 34 34 H 1.08990 * 117.50123 * 214.97366 * 20 19 9 35 35 H 1.09002 * 117.49448 * 359.97438 * 20 19 9 36 36 H 1.08994 * 117.49620 * 359.97408 * 21 19 9 37 37 H 1.09001 * 117.49835 * 145.00064 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0412 -1.2303 -0.3215 9 7 1.3881 -2.3522 0.4060 10 6 0.4646 -2.3229 1.5428 11 6 1.2386 -2.5883 2.8356 12 8 2.1584 -1.5197 3.0681 13 6 2.9362 -1.6707 4.2573 14 1 3.0535 -2.7258 4.5044 15 6 4.3167 -0.9972 4.0904 16 6 4.3363 0.0948 5.1828 17 8 3.3948 -0.3622 6.1782 18 6 2.2849 -0.9060 5.4309 19 6 1.6459 -3.6119 -0.2960 20 6 2.3431 -3.5337 -1.6557 21 6 3.1029 -4.0576 -0.4354 22 1 -0.4850 0.8369 0.0728 23 1 -0.0117 -1.3439 1.5989 24 1 -0.2978 -3.0907 1.4115 25 1 0.5404 -2.6547 3.6700 26 1 1.7865 -3.5262 2.7450 27 1 5.1165 -1.7188 4.2573 28 1 4.4061 -0.5493 3.1007 29 1 5.3331 0.1814 5.6150 30 1 4.0185 1.0515 4.7687 31 1 1.6508 -0.1031 5.0552 32 1 1.7061 -1.5881 6.0536 33 1 0.8929 -4.3883 -0.1605 34 1 2.0488 -4.2585 -2.4146 35 1 2.6097 -2.5447 -2.0284 36 1 3.8696 -3.4134 -0.0052 37 1 3.3084 -5.1272 -0.3916 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724943462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:48 Heat of formation + Delta-G solvation = -40.322819 kcal Electronic energy + Delta-G solvation = -18373.567771 eV Core-core repulsion = 15538.879322 eV Total energy + Delta-G solvation = -2834.688449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.26139 -37.26125 -36.24242 -33.41571 -31.35701 -30.44550 -28.51184 -27.42933 -24.24652 -22.70433 -21.47233 -21.33230 -20.76774 -19.74706 -16.80195 -16.39278 -16.10736 -15.38700 -15.16062 -14.64549 -14.43228 -14.02339 -13.77959 -13.20409 -12.90811 -12.54952 -11.99496 -11.60895 -11.52409 -11.39581 -11.11943 -10.87898 -10.71513 -10.56259 -10.43737 -10.37930 -10.00541 -9.81962 -9.69255 -9.58431 -9.24593 -8.79431 -8.30799 -6.46434 -5.68485 -3.32965 3.42610 3.47848 3.51683 4.02034 4.46189 4.54164 4.86766 4.98959 5.03391 5.19102 5.25159 5.44991 5.47328 5.57852 5.84033 5.86804 5.91441 5.95765 6.02597 6.07301 6.12612 6.18539 6.27246 6.35382 6.49691 6.57235 6.63501 6.67228 6.90095 7.02035 7.21363 7.59055 7.87161 8.02311 8.58169 9.22710 9.85634 10.41030 11.27462 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.009400 C = 0.007663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.906560 B = 2977.912608 C = 3653.074702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.020 3.980 3 Si 0.894 3.106 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.237 4.237 8 H 0.056 0.944 9 N -0.543 5.543 10 C 0.146 3.854 11 C 0.046 3.954 12 O -0.335 6.335 13 C 0.053 3.947 14 H 0.065 0.935 15 C -0.155 4.155 16 C 0.046 3.954 17 O -0.380 6.380 18 C 0.023 3.977 19 C 0.126 3.874 20 C -0.196 4.196 21 C -0.228 4.228 22 H 0.253 0.747 23 H 0.103 0.897 24 H 0.043 0.957 25 H 0.026 0.974 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 -4.307 7.325 9.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.179 4.179 3 Si 0.724 3.276 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.367 4.367 8 H 0.074 0.926 9 N -0.259 5.259 10 C 0.020 3.980 11 C -0.033 4.033 12 O -0.253 6.253 13 C -0.006 4.006 14 H 0.083 0.917 15 C -0.192 4.192 16 C -0.030 4.030 17 O -0.299 6.299 18 C -0.054 4.054 19 C 0.016 3.984 20 C -0.235 4.235 21 C -0.269 4.269 22 H 0.063 0.937 23 H 0.120 0.880 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.255 -3.953 7.366 9.381 hybrid contribution 0.510 0.557 0.003 0.755 sum 4.765 -3.396 7.369 9.410 Atomic orbital electron populations 1.70026 1.05537 1.26083 1.51630 1.25053 0.94853 0.98474 0.99549 0.86518 0.79323 0.83633 0.78161 1.21007 1.21831 1.20683 1.18698 0.92991 0.85014 1.39984 0.92608 1.43273 1.50332 1.02841 1.29448 1.21010 0.90476 1.03472 0.83070 1.23503 0.91388 0.89117 0.99291 1.88303 1.52862 1.44958 1.39154 1.23343 0.91560 0.98545 0.87169 0.91699 1.22979 0.96383 0.98564 1.01300 1.23381 0.93585 0.97146 0.88903 1.89057 1.30922 1.80175 1.29781 1.23993 0.90045 0.97965 0.93370 1.21150 0.91402 0.90992 0.94834 1.23049 1.06896 1.01995 0.91589 1.23353 1.00008 0.98660 1.04922 0.93704 0.87967 0.93886 0.95556 0.94958 0.90572 0.88622 0.89379 0.92078 0.91118 0.89432 0.89630 0.90942 0.88339 0.89780 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 11.49 55.49 0.64 -24.73 16 2 C 0.02 0.56 4.97 -17.43 -0.09 0.47 16 3 Si 0.89 21.91 29.60 -169.99 -5.03 16.87 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.35 7.51 -15.06 -0.11 -6.47 16 8 H 0.06 1.54 7.26 -52.49 -0.38 1.16 16 9 N -0.54 -13.23 2.75 -165.66 -0.46 -13.68 16 10 C 0.15 3.31 5.76 -4.04 -0.02 3.28 16 11 C 0.05 0.89 6.12 37.16 0.23 1.12 16 12 O -0.33 -6.99 9.45 -35.23 -0.33 -7.32 16 13 C 0.05 0.90 3.61 -25.16 -0.09 0.80 16 14 H 0.06 1.00 7.82 -51.93 -0.41 0.59 16 15 C -0.15 -2.40 6.90 -25.17 -0.17 -2.57 16 16 C 0.05 0.67 7.63 37.93 0.29 0.96 16 17 O -0.38 -6.10 11.65 -35.23 -0.41 -6.51 16 18 C 0.02 0.37 7.38 37.94 0.28 0.65 16 19 C 0.13 2.68 6.61 -67.93 -0.45 2.24 16 20 C -0.20 -3.98 9.82 -26.73 -0.26 -4.24 16 21 C -0.23 -4.42 10.09 -26.73 -0.27 -4.69 16 22 H 0.25 7.03 8.32 -40.82 -0.34 6.69 16 23 H 0.10 2.65 5.57 -51.92 -0.29 2.36 16 24 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 1.68 8.00 -51.93 -0.42 1.27 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.10 2.22 6.98 -51.93 -0.36 1.86 16 36 H 0.08 1.76 7.99 -51.93 -0.41 1.34 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 303.92 15.07 4.58 4.58 Total: -1.00 -29.20 303.92 -7.73 -36.93 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.04 Total: 2.31 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -0.67 Total: -8.45 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.18 Total: -38.42 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.74 Total: -13.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.20 -7.73 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724943462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.397 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds