Wall clock time and date at job start Mon Mar 30 2020 03:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48495 * 109.47446 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46717 * 299.99958 * 3 2 1 6 6 H 1.48495 * 109.47283 * 60.00030 * 3 2 1 7 7 C 1.37879 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00083 * 359.97438 * 7 2 1 10 10 O 1.42908 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99761 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46871 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46924 * 64.99970 * 12 11 10 14 14 C 1.46896 * 110.99877 * 179.97438 * 13 12 11 15 15 H 1.08998 * 115.56112 * 9.26641 * 14 13 12 16 16 C 1.53126 * 117.51234 * 223.46269 * 14 13 12 17 17 C 1.52463 * 59.85756 * 252.55215 * 16 14 13 18 18 C 1.53253 * 128.58303 * 242.39953 * 17 16 14 19 19 C 1.53892 * 86.87923 * 194.88690 * 18 17 16 20 20 O 1.42905 * 113.58542 * 139.57508 * 19 18 17 21 21 C 1.53415 * 128.60562 * 117.50987 * 17 16 14 22 22 H 0.96999 * 120.00158 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47176 * 60.00572 * 9 7 2 24 24 H 1.08998 * 109.47568 * 300.00537 * 9 7 2 25 25 H 1.08997 * 109.47176 * 60.00184 * 11 10 9 26 26 H 1.09001 * 109.47078 * 300.00272 * 11 10 9 27 27 H 1.08997 * 109.47067 * 305.00498 * 12 11 10 28 28 H 1.08995 * 109.46719 * 184.99822 * 12 11 10 29 29 H 1.00896 * 111.00470 * 303.95601 * 13 12 11 30 30 H 1.09002 * 117.51507 * 145.10448 * 16 14 13 31 31 H 1.08999 * 117.51530 * 0.02562 * 16 14 13 32 32 H 1.09004 * 113.64369 * 80.39579 * 18 17 16 33 33 H 1.08996 * 113.73098 * 309.39918 * 18 17 16 34 34 H 1.09003 * 113.58979 * 270.31265 * 19 18 17 35 35 H 0.96696 * 114.00036 * 181.44900 * 20 19 18 36 36 H 1.09005 * 113.64588 * 50.62868 * 21 17 16 37 37 H 1.08998 * 113.69625 * 279.57827 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1797 -3.5854 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9563 -0.0004 13 7 3.4071 -5.8879 1.2554 14 6 4.4578 -6.9139 1.2919 15 1 4.6249 -7.4494 0.3573 16 6 4.6401 -7.6936 2.5971 17 6 5.6696 -6.6498 2.1786 18 6 7.1539 -6.8484 1.8528 19 6 7.2996 -5.3217 1.9801 20 8 8.4962 -4.9151 2.6473 21 6 6.0637 -5.3525 2.8965 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 0.9452 -4.9822 -0.8913 26 1 0.9446 -4.9827 0.8886 27 1 3.3222 -5.7956 -0.8416 28 1 2.1821 -6.9375 -0.0904 29 1 3.7956 -4.9671 1.3935 30 1 4.9270 -8.7424 2.5213 31 1 3.9801 -7.4454 3.4283 32 1 7.3340 -7.2221 0.8448 33 1 7.6997 -7.4047 2.6147 34 1 7.1353 -4.7882 1.0439 35 1 8.5832 -3.9576 2.7502 36 1 6.3042 -5.4917 3.9505 37 1 5.3710 -4.5287 2.7241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724953421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:48 Heat of formation + Delta-G solvation = -53.526180 kcal Electronic energy + Delta-G solvation = -17072.239411 eV Core-core repulsion = 14236.978421 eV Total energy + Delta-G solvation = -2835.260990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90070 -37.24365 -36.36962 -34.30022 -32.74255 -31.72424 -28.18518 -26.56310 -25.84771 -22.40473 -22.34480 -21.67656 -21.17943 -18.47952 -17.56344 -16.47761 -15.99909 -15.81828 -15.51935 -14.88088 -14.53970 -14.35664 -13.98178 -13.51312 -13.06931 -12.79705 -12.49498 -12.45662 -12.08172 -11.65695 -11.33688 -11.26393 -10.96597 -10.83213 -10.77955 -10.59012 -10.36349 -10.08216 -9.98670 -9.55989 -9.12563 -8.86132 -8.20616 -8.14962 -6.13718 -4.15675 3.26589 3.33158 3.38718 3.63656 3.95644 4.16656 4.32196 4.47472 4.61819 4.68625 4.90055 4.91616 5.08084 5.22900 5.26342 5.42926 5.49529 5.62441 5.66587 5.69277 5.77614 5.88177 6.03607 6.08184 6.13430 6.17805 6.18914 6.32678 7.08505 7.20993 7.41009 7.53757 7.57271 7.75875 8.12194 8.54036 8.97326 9.49321 10.97854 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.005089 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.199018 B = 5500.405649 C = 6589.445395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.197 3.803 10 O -0.400 6.400 11 C 0.061 3.939 12 C 0.067 3.933 13 N -0.655 5.655 14 C 0.053 3.947 15 H 0.099 0.901 16 C -0.149 4.149 17 C -0.174 4.174 18 C -0.086 4.086 19 C 0.079 3.921 20 O -0.564 6.564 21 C -0.126 4.126 22 H 0.264 0.736 23 H 0.004 0.996 24 H 0.006 0.994 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.357 0.643 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.379 0.621 36 H 0.091 0.909 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.775 -13.287 3.188 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.320 6.320 11 C -0.017 4.017 12 C -0.062 4.062 13 N -0.288 5.288 14 C -0.058 4.058 15 H 0.116 0.884 16 C -0.187 4.187 17 C -0.175 4.175 18 C -0.123 4.123 19 C 0.020 3.980 20 O -0.370 6.370 21 C -0.164 4.164 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.179 0.821 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.227 0.773 36 H 0.109 0.891 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.444 -14.125 3.531 17.918 hybrid contribution 0.401 1.809 -0.647 1.962 sum 10.845 -12.316 2.885 16.662 Atomic orbital electron populations 1.69971 1.06107 1.27074 1.50518 1.24949 0.94967 0.99431 0.95136 0.86295 0.79950 0.82655 0.77666 1.19551 1.20835 1.20794 1.21077 0.93982 0.89393 1.50838 0.91631 1.20187 0.88702 0.83430 0.95427 1.87780 1.35849 1.13158 1.95252 1.22306 0.94516 0.85210 0.99676 1.22019 0.95768 0.98246 0.90155 1.60227 1.24783 1.08447 1.35344 1.22316 0.91069 0.98059 0.94354 0.88358 1.23048 1.00495 0.95800 0.99384 1.22298 0.90994 0.99223 1.05023 1.22549 0.92941 0.94886 1.01968 1.23254 0.83800 0.96003 0.94945 1.86464 1.41892 1.28228 1.80421 1.23140 0.97463 0.96219 0.99591 0.92677 0.97779 0.97598 0.93961 0.93487 0.94567 0.90437 0.82052 0.88879 0.88120 0.91107 0.89047 0.89892 0.77342 0.89059 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.01 9.43 -34.44 -0.32 -15.33 16 8 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 9 C 0.20 5.37 5.69 36.00 0.20 5.57 16 10 O -0.40 -9.44 9.85 -35.23 -0.35 -9.78 16 11 C 0.06 1.12 6.28 37.16 0.23 1.36 16 12 C 0.07 1.01 5.96 -3.82 -0.02 0.98 16 13 N -0.66 -9.79 6.75 -106.95 -0.72 -10.51 16 14 C 0.05 0.65 6.26 -67.92 -0.43 0.23 16 15 H 0.10 1.12 7.90 -51.93 -0.41 0.71 16 16 C -0.15 -1.66 10.46 -26.94 -0.28 -1.94 16 17 C -0.17 -2.00 2.98 -154.71 -0.46 -2.46 16 18 C -0.09 -0.92 7.93 -26.14 -0.21 -1.12 16 19 C 0.08 0.89 5.21 -25.81 -0.13 0.75 16 20 O -0.56 -6.30 13.67 -35.23 -0.48 -6.79 16 21 C -0.13 -1.50 7.76 -26.06 -0.20 -1.70 16 22 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 23 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.36 5.94 7.12 -39.29 -0.28 5.66 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.38 2.80 9.12 45.56 0.42 3.22 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.00 7.17 -51.93 -0.37 0.62 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -31.40 312.95 -8.10 -39.50 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.26 Total: 4.43 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.72 Total: -12.15 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.01 Total: -36.55 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.83 Total: -16.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.40 -8.10 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724953421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.024 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds